data_4BY0
#
_model_server_result.job_id            a40oCS7K0Ou1eMckZWcUBA 
_model_server_result.datetime_utc      '2024-10-19 11:39:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4by0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1460}' 
#
_entry.id    4BY0 
#
_exptl.entry_id    4BY0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              496.507 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "(R)-N-(3-(1H-indol-3-yl)-1-oxo-1-(pyridin-4-ylamino)propan-2-yl)-3,3'-difluoro-(1,1'-biphenyl)-4-carboxamide" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4BY0 
_cell.length_a            124.167 
_cell.length_b            124.167 
_cell.length_c            119.839 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4BY0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 402 A CYS 422 1_555 C FE HEM . A HEM 1450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
metalc ? metalc2 C FE HEM . A HEM 1450 1_555 D N1 5PS . A 5PS 1460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? 
metalc ? metalc3 B SG CYS 402 B CYS 422 1_555 E FE HEM . B HEM 1450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? 
metalc ? metalc4 E FE HEM . B HEM 1450 1_555 F N1 5PS . B 5PS 1460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.882 ? 
#
_chem_comp.formula           'C29 H22 F2 N4 O2' 
_chem_comp.formula_weight    496.507 
_chem_comp.id                5PS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "(R)-N-(3-(1H-indol-3-yl)-1-oxo-1-(pyridin-4-ylamino)propan-2-yl)-3,3'-difluoro-(1,1'-biphenyl)-4-carboxamide" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 5PS sing 1 n y 
C1 C5 5PS doub 2 n y 
F1 C17 5PS sing 3 n n 
N1 C2 5PS doub 4 n y 
N1 C3 5PS sing 5 n y 
O1 C8 5PS doub 6 n n 
F2 C20 5PS sing 7 n n 
N2 C5 5PS sing 8 n n 
N2 C6 5PS sing 9 n n 
O2 C6 5PS doub 10 n n 
C3 C4 5PS doub 11 n y 
N3 C8 5PS sing 12 n n 
N3 C7 5PS sing 13 n n 
C4 C5 5PS sing 14 n y 
N4 C23 5PS sing 15 n y 
N4 C24 5PS sing 16 n y 
C6 C7 5PS sing 17 n n 
C8 C9 5PS sing 18 n n 
C9 C10 5PS doub 19 n y 
C9 C20 5PS sing 20 n y 
C10 C11 5PS sing 21 n y 
C11 C12 5PS doub 22 n y 
C12 C13 5PS sing 23 n n 
C12 C19 5PS sing 24 n y 
C13 C14 5PS sing 25 n y 
C13 C18 5PS doub 26 n y 
C14 C15 5PS doub 27 n y 
C15 C16 5PS sing 28 n y 
C16 C17 5PS doub 29 n y 
C17 C18 5PS sing 30 n y 
C19 C20 5PS doub 31 n y 
C21 C22 5PS sing 32 n n 
C21 C7 5PS sing 33 n n 
C22 C23 5PS doub 34 n y 
C22 C29 5PS sing 35 n y 
C24 C25 5PS doub 36 n y 
C24 C29 5PS sing 37 n y 
C25 C26 5PS sing 38 n y 
C26 C27 5PS doub 39 n y 
C27 C28 5PS sing 40 n y 
C28 C29 5PS doub 41 n y 
C1 H1 5PS sing 42 n n 
C2 H2 5PS sing 43 n n 
C3 H3 5PS sing 44 n n 
N2 HA 5PS sing 45 n n 
C4 H4 5PS sing 46 n n 
N3 HB 5PS sing 47 n n 
C7 H7 5PS sing 48 n n 
N4 HC 5PS sing 49 n n 
C23 H23 5PS sing 50 n n 
C10 H10 5PS sing 51 n n 
C11 H11 5PS sing 52 n n 
C19 H19 5PS sing 53 n n 
C14 H14 5PS sing 54 n n 
C18 H18 5PS sing 55 n n 
C15 H15 5PS sing 56 n n 
C16 H16 5PS sing 57 n n 
C21 H211 5PS sing 58 n n 
C21 H212 5PS sing 59 n n 
C25 H25 5PS sing 60 n n 
C26 H26 5PS sing 61 n n 
C27 H27 5PS sing 62 n n 
C28 H28 5PS sing 63 n n 
#
_atom_sites.entry_id                     4BY0 
_atom_sites.fract_transf_matrix[1][1]    0.008054 
_atom_sites.fract_transf_matrix[1][2]    0.00465 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0093 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008345 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 1450 1450 HEM HEM . 
D 3 5PS A 1 1460 1460 5PS 5PS . 
E 2 HEM B 1 1450 1450 HEM HEM . 
F 3 5PS B 1 1460 1460 5PS 5PS . 
G 4 HOH A 1 2001 2001 HOH HOH . 
G 4 HOH A 2 2002 2002 HOH HOH . 
G 4 HOH A 3 2003 2003 HOH HOH . 
G 4 HOH A 4 2004 2004 HOH HOH . 
G 4 HOH A 5 2005 2005 HOH HOH . 
G 4 HOH A 6 2006 2006 HOH HOH . 
G 4 HOH A 7 2007 2007 HOH HOH . 
G 4 HOH A 8 2008 2008 HOH HOH . 
H 4 HOH B 1 2001 2001 HOH HOH . 
H 4 HOH B 2 2002 2002 HOH HOH . 
H 4 HOH B 3 2003 2003 HOH HOH . 
H 4 HOH B 4 2004 2004 HOH HOH . 
H 4 HOH B 5 2005 2005 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 5PS . . . F 3 -23.579 27.482 18.824 1 73.61 ? C1 5PS 1460 B 1 
HETATM 2 F F1 5PS . . . F 3 -23.495 19.969 8.394 1 109.63 ? F1 5PS 1460 B 1 
HETATM 3 N N1 5PS . . . F 3 -23.606 28.028 21.132 1 69.72 ? N1 5PS 1460 B 1 
HETATM 4 O O1 5PS . . . F 3 -28.242 24.513 15.169 1 81.94 ? O1 5PS 1460 B 1 
HETATM 5 C C2 5PS . . . F 3 -22.953 27.943 19.967 1 69.71 ? C2 5PS 1460 B 1 
HETATM 6 F F2 5PS . . . F 3 -25.64 25.344 12.461 1 80.35 ? F2 5PS 1460 B 1 
HETATM 7 N N2 5PS . . . F 3 -25.476 26.749 17.701 1 69.49 ? N2 5PS 1460 B 1 
HETATM 8 O O2 5PS . . . F 3 -27.526 27.551 18.271 1 72.3 ? O2 5PS 1460 B 1 
HETATM 9 C C3 5PS . . . F 3 -24.888 27.659 21.208 1 74.53 ? C3 5PS 1460 B 1 
HETATM 10 N N3 5PS . . . F 3 -26.507 25.893 15.312 1 73.71 ? N3 5PS 1460 B 1 
HETATM 11 C C4 5PS . . . F 3 -25.565 27.184 20.088 1 74.02 ? C4 5PS 1460 B 1 
HETATM 12 N N4 5PS . . . F 3 -23.863 29.042 14.513 1 78.32 ? N4 5PS 1460 B 1 
HETATM 13 C C5 5PS . . . F 3 -24.893 27.071 18.869 1 71.23 ? C5 5PS 1460 B 1 
HETATM 14 C C6 5PS . . . F 3 -26.758 27.071 17.464 1 72.87 ? C6 5PS 1460 B 1 
HETATM 15 C C8 5PS . . . F 3 -27.084 24.769 14.918 1 76.57 ? C8 5PS 1460 B 1 
HETATM 16 C C9 5PS . . . F 3 -26.364 23.74 14.133 1 73.24 ? C9 5PS 1460 B 1 
HETATM 17 C C10 5PS . . . F 3 -26.394 22.429 14.554 1 70.53 ? C10 5PS 1460 B 1 
HETATM 18 C C11 5PS . . . F 3 -25.744 21.47 13.799 1 73.16 ? C11 5PS 1460 B 1 
HETATM 19 C C12 5PS . . . F 3 -25.08 21.808 12.618 1 75.96 ? C12 5PS 1460 B 1 
HETATM 20 C C13 5PS . . . F 3 -24.374 20.782 11.826 1 83.55 ? C13 5PS 1460 B 1 
HETATM 21 C C14 5PS . . . F 3 -23.767 19.72 12.483 1 91.1 ? C14 5PS 1460 B 1 
HETATM 22 C C15 5PS . . . F 3 -23.091 18.747 11.758 1 95.43 ? C15 5PS 1460 B 1 
HETATM 23 C C16 5PS . . . F 3 -23.003 18.837 10.379 1 93.52 ? C16 5PS 1460 B 1 
HETATM 24 C C17 5PS . . . F 3 -23.6 19.903 9.728 1 95.93 ? C17 5PS 1460 B 1 
HETATM 25 C C18 5PS . . . F 3 -24.288 20.88 10.441 1 89.7 ? C18 5PS 1460 B 1 
HETATM 26 C C19 5PS . . . F 3 -25.036 23.116 12.167 1 73.07 ? C19 5PS 1460 B 1 
HETATM 27 C C20 5PS . . . F 3 -25.671 24.089 12.887 1 72.53 ? C20 5PS 1460 B 1 
HETATM 28 C C21 5PS . . . F 3 -27.368 28.199 15.347 1 74.9 ? C21 5PS 1460 B 1 
HETATM 29 C C22 5PS . . . F 3 -25.952 28.684 15.231 1 76.37 ? C22 5PS 1460 B 1 
HETATM 30 C C23 5PS . . . F 3 -25.031 28.458 14.21 1 77.3 ? C23 5PS 1460 B 1 
HETATM 31 C C24 5PS . . . F 3 -23.902 29.661 15.692 1 76.1 ? C24 5PS 1460 B 1 
HETATM 32 C C25 5PS . . . F 3 -23.001 30.379 16.45 1 77.87 ? C25 5PS 1460 B 1 
HETATM 33 C C26 5PS . . . F 3 -23.407 30.885 17.684 1 76.34 ? C26 5PS 1460 B 1 
HETATM 34 C C27 5PS . . . F 3 -24.694 30.677 18.177 1 74.22 ? C27 5PS 1460 B 1 
HETATM 35 C C28 5PS . . . F 3 -25.636 29.959 17.452 1 74.47 ? C28 5PS 1460 B 1 
HETATM 36 C C29 5PS . . . F 3 -25.248 29.466 16.234 1 74.07 ? C29 5PS 1460 B 1 
HETATM 37 C C7 5PS . . . F 3 -27.288 26.871 16.077 1 73.23 ? C7 5PS 1460 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           328 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           37 
#