data_4BZ1
#
_model_server_result.job_id            ej2ikLR5-HkEekFBZf4XKw 
_model_server_result.datetime_utc      '2024-10-19 04:35:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4bz1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1397}' 
#
_entry.id    4BZ1 
#
_exptl.entry_id    4BZ1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4BZ1 
_cell.length_a            39.802 
_cell.length_b            107.009 
_cell.length_c            134.896 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4BZ1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 2 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 2 A CYS 302 1_555 A SG CYS 33 A CYS 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 B SG CYS 144 H CYS 144 1_555 B SG CYS 199 H CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf4 C SG CYS 23 L CYS 23 1_555 C SG CYS 94 L CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf5 C SG CYS 140 L CYS 140 1_555 C SG CYS 200 L CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
metalc ? metalc1 B O TYR 27 H TYR 27 1_555 H NA NA . H NA 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.091 ? 
metalc ? metalc2 B N PHE 29 H PHE 29 1_555 H NA NA . H NA 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.041 ? 
metalc ? metalc3 B OD1 ASN 159 H ASN 159 1_555 F NA NA . H NA 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? 
metalc ? metalc4 B OG SER 160 H SER 160 1_555 E NA NA . H NA 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.003 ? 
metalc ? metalc5 B OG SER 182 H SER 182 1_555 G NA NA . H NA 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? 
metalc ? metalc6 B OG1 THR 196 H THR 196 1_555 F NA NA . H NA 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.08 ? 
metalc ? metalc7 B OG1 THR 198 H THR 198 1_555 F NA NA . H NA 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? 
metalc ? metalc8 B N THR 198 H THR 198 1_555 F NA NA . H NA 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.14 ? 
metalc ? metalc9 G NA NA . H NA 220 1_555 N O HOH . H HOH 2045 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? 
metalc ? metalc10 G NA NA . H NA 220 1_555 N O HOH . H HOH 2055 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? 
metalc ? metalc11 C OE2 GLU 191 L GLU 191 1_555 J ZN ZN . L ZN 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
metalc ? metalc12 C OE1 GLU 191 L GLU 191 1_555 J ZN ZN . L ZN 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
metalc ? metalc13 C NE2 HIS 195 L HIS 195 1_555 J ZN ZN . L ZN 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
metalc ? metalc14 J ZN ZN . L ZN 219 1_555 K CL CL . L CL 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? 
metalc ? metalc15 J ZN ZN . L ZN 219 1_555 L CL CL . L CL 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     4BZ1 
_atom_sites.fract_transf_matrix[1][1]    0.025124 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009345 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007413 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 GOL A 1 1397 1397 GOL GOL . 
E 5 NA H 1 218 218 NA NA . 
F 5 NA H 1 219 219 NA NA . 
G 5 NA H 1 220 220 NA NA . 
H 5 NA H 1 221 221 NA NA . 
I 4 GOL H 1 222 222 GOL GOL . 
J 6 ZN L 1 219 219 ZN ZN . 
K 7 CL L 1 220 220 CL CL . 
L 7 CL L 1 221 221 CL CL . 
M 8 HOH A 1 2001 2001 HOH HOH . 
M 8 HOH A 2 2002 2002 HOH HOH . 
M 8 HOH A 3 2003 2003 HOH HOH . 
M 8 HOH A 4 2004 2004 HOH HOH . 
M 8 HOH A 5 2005 2005 HOH HOH . 
M 8 HOH A 6 2006 2006 HOH HOH . 
M 8 HOH A 7 2007 2007 HOH HOH . 
M 8 HOH A 8 2008 2008 HOH HOH . 
N 8 HOH H 1 2001 2001 HOH HOH . 
N 8 HOH H 2 2002 2002 HOH HOH . 
N 8 HOH H 3 2003 2003 HOH HOH . 
N 8 HOH H 4 2004 2004 HOH HOH . 
N 8 HOH H 5 2005 2005 HOH HOH . 
N 8 HOH H 6 2006 2006 HOH HOH . 
N 8 HOH H 7 2007 2007 HOH HOH . 
N 8 HOH H 8 2008 2008 HOH HOH . 
N 8 HOH H 9 2009 2009 HOH HOH . 
N 8 HOH H 10 2010 2010 HOH HOH . 
N 8 HOH H 11 2011 2011 HOH HOH . 
N 8 HOH H 12 2012 2012 HOH HOH . 
N 8 HOH H 13 2013 2013 HOH HOH . 
N 8 HOH H 14 2014 2014 HOH HOH . 
N 8 HOH H 15 2015 2015 HOH HOH . 
N 8 HOH H 16 2016 2016 HOH HOH . 
N 8 HOH H 17 2017 2017 HOH HOH . 
N 8 HOH H 18 2018 2018 HOH HOH . 
N 8 HOH H 19 2019 2019 HOH HOH . 
N 8 HOH H 20 2020 2020 HOH HOH . 
N 8 HOH H 21 2021 2021 HOH HOH . 
N 8 HOH H 22 2022 2022 HOH HOH . 
N 8 HOH H 23 2023 2023 HOH HOH . 
N 8 HOH H 24 2024 2024 HOH HOH . 
N 8 HOH H 25 2025 2025 HOH HOH . 
N 8 HOH H 26 2026 2026 HOH HOH . 
N 8 HOH H 27 2027 2027 HOH HOH . 
N 8 HOH H 28 2028 2028 HOH HOH . 
N 8 HOH H 29 2029 2029 HOH HOH . 
N 8 HOH H 30 2030 2030 HOH HOH . 
N 8 HOH H 31 2031 2031 HOH HOH . 
N 8 HOH H 32 2032 2032 HOH HOH . 
N 8 HOH H 33 2033 2033 HOH HOH . 
N 8 HOH H 34 2034 2034 HOH HOH . 
N 8 HOH H 35 2035 2035 HOH HOH . 
N 8 HOH H 36 2036 2036 HOH HOH . 
N 8 HOH H 37 2037 2037 HOH HOH . 
N 8 HOH H 38 2038 2038 HOH HOH . 
N 8 HOH H 39 2039 2039 HOH HOH . 
N 8 HOH H 40 2040 2040 HOH HOH . 
N 8 HOH H 41 2041 2041 HOH HOH . 
N 8 HOH H 42 2042 2042 HOH HOH . 
N 8 HOH H 43 2043 2043 HOH HOH . 
N 8 HOH H 44 2044 2044 HOH HOH . 
N 8 HOH H 45 2045 2045 HOH HOH . 
N 8 HOH H 46 2046 2046 HOH HOH . 
N 8 HOH H 47 2047 2047 HOH HOH . 
N 8 HOH H 48 2048 2048 HOH HOH . 
N 8 HOH H 49 2049 2049 HOH HOH . 
N 8 HOH H 50 2050 2050 HOH HOH . 
N 8 HOH H 51 2051 2051 HOH HOH . 
N 8 HOH H 52 2052 2052 HOH HOH . 
N 8 HOH H 53 2053 2053 HOH HOH . 
N 8 HOH H 54 2054 2054 HOH HOH . 
N 8 HOH H 55 2055 2055 HOH HOH . 
N 8 HOH H 56 2056 2056 HOH HOH . 
N 8 HOH H 57 2057 2057 HOH HOH . 
N 8 HOH H 58 2058 2058 HOH HOH . 
N 8 HOH H 59 2059 2059 HOH HOH . 
O 8 HOH L 1 2001 2001 HOH HOH . 
O 8 HOH L 2 2002 2002 HOH HOH . 
O 8 HOH L 3 2003 2003 HOH HOH . 
O 8 HOH L 4 2004 2004 HOH HOH . 
O 8 HOH L 5 2005 2005 HOH HOH . 
O 8 HOH L 6 2006 2006 HOH HOH . 
O 8 HOH L 7 2007 2007 HOH HOH . 
O 8 HOH L 8 2008 2008 HOH HOH . 
O 8 HOH L 9 2009 2009 HOH HOH . 
O 8 HOH L 10 2010 2010 HOH HOH . 
O 8 HOH L 11 2011 2011 HOH HOH . 
O 8 HOH L 12 2012 2012 HOH HOH . 
O 8 HOH L 13 2013 2013 HOH HOH . 
O 8 HOH L 14 2014 2014 HOH HOH . 
O 8 HOH L 15 2015 2015 HOH HOH . 
O 8 HOH L 16 2016 2016 HOH HOH . 
O 8 HOH L 17 2017 2017 HOH HOH . 
O 8 HOH L 18 2018 2018 HOH HOH . 
O 8 HOH L 19 2019 2019 HOH HOH . 
O 8 HOH L 20 2020 2020 HOH HOH . 
O 8 HOH L 21 2021 2021 HOH HOH . 
O 8 HOH L 22 2022 2022 HOH HOH . 
O 8 HOH L 23 2023 2023 HOH HOH . 
O 8 HOH L 24 2024 2024 HOH HOH . 
O 8 HOH L 25 2025 2025 HOH HOH . 
O 8 HOH L 26 2026 2026 HOH HOH . 
O 8 HOH L 27 2027 2027 HOH HOH . 
O 8 HOH L 28 2028 2028 HOH HOH . 
O 8 HOH L 29 2029 2029 HOH HOH . 
O 8 HOH L 30 2030 2030 HOH HOH . 
O 8 HOH L 31 2031 2031 HOH HOH . 
O 8 HOH L 32 2032 2032 HOH HOH . 
O 8 HOH L 33 2033 2033 HOH HOH . 
O 8 HOH L 34 2034 2034 HOH HOH . 
O 8 HOH L 35 2035 2035 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 0.501 1.581 18.861 1 59.87 ? C1 GOL 1397 A 1 
HETATM 2 O O1 GOL . . . D 4 -0.246 2.079 17.773 1 58.49 ? O1 GOL 1397 A 1 
HETATM 3 C C2 GOL . . . D 4 0.943 0.151 18.568 1 59.87 ? C2 GOL 1397 A 1 
HETATM 4 O O2 GOL . . . D 4 0.374 -0.276 17.354 1 51.03 ? O2 GOL 1397 A 1 
HETATM 5 C C3 GOL . . . D 4 0.5 -0.791 19.68 1 69.12 ? C3 GOL 1397 A 1 
HETATM 6 O O3 GOL . . . D 4 0.443 -2.11 19.186 1 73.19 ? O3 GOL 1397 A 1 
HETATM 7 H H11 GOL . . . D 4 -0.108 1.6 19.765 1 71.85 ? H11 GOL 1397 A 1 
HETATM 8 H H12 GOL . . . D 4 1.375 2.21 19.026 1 71.85 ? H12 GOL 1397 A 1 
HETATM 9 H HO1 GOL . . . D 4 0.259 2.792 17.33 1 70.19 ? HO1 GOL 1397 A 1 
HETATM 10 H H2 GOL . . . D 4 2.031 0.126 18.499 1 71.85 ? H2 GOL 1397 A 1 
HETATM 11 H HO2 GOL . . . D 4 -0.603 -0.232 17.418 1 61.23 ? HO2 GOL 1397 A 1 
HETATM 12 H H31 GOL . . . D 4 -0.483 -0.492 20.046 1 82.95 ? H31 GOL 1397 A 1 
HETATM 13 H H32 GOL . . . D 4 1.203 -0.738 20.511 1 82.95 ? H32 GOL 1397 A 1 
HETATM 14 H HO3 GOL . . . D 4 0.221 -2.724 19.918 1 87.83 ? HO3 GOL 1397 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           328 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           14 
#