data_4BZQ # _model_server_result.job_id 7OYPLt9at0UFvMotQFqTUw _model_server_result.datetime_utc '2024-10-19 12:37:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4bzq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1613}' # _entry.id 4BZQ # _exptl.entry_id 4BZQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.284 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-PHOSPHOSULFATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4BZQ _cell.length_a 63.93 _cell.length_b 70.11 _cell.length_c 79.28 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BZQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # _chem_comp.formula 'C10 H14 N5 O10 P S' _chem_comp.formula_weight 427.284 _chem_comp.id ADX _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-PHOSPHOSULFATE" _chem_comp.type 'rna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag SB O1B ADX doub 45 n n SB O2B ADX doub 46 n n SB O3B ADX sing 47 n n SB O3A ADX sing 48 n n O3B HOB3 ADX sing 49 n n PA O1A ADX doub 50 n n PA O2A ADX sing 51 n n PA O3A ADX sing 52 n n PA O5' ADX sing 53 n n O2A HOA2 ADX sing 54 n n O5' C5' ADX sing 55 n n C5' C4' ADX sing 56 n n C5' H5' ADX sing 57 n n C5' "H5''" ADX sing 58 n n C4' O4' ADX sing 59 n n C4' C3' ADX sing 60 n n C4' H4' ADX sing 61 n n O4' C1' ADX sing 62 n n C3' O3' ADX sing 63 n n C3' C2' ADX sing 64 n n C3' H3' ADX sing 65 n n O3' HO3' ADX sing 66 n n C2' O2' ADX sing 67 n n C2' C1' ADX sing 68 n n C2' H2' ADX sing 69 n n O2' HO2' ADX sing 70 n n C1' N9 ADX sing 71 n n C1' H1' ADX sing 72 n n N9 C8 ADX sing 73 n y N9 C4 ADX sing 74 n y C8 N7 ADX doub 75 n y C8 H8 ADX sing 76 n n N7 C5 ADX sing 77 n y C5 C6 ADX sing 78 n y C5 C4 ADX doub 79 n y C6 N6 ADX sing 80 n n C6 N1 ADX doub 81 n y N6 HN61 ADX sing 82 n n N6 HN62 ADX sing 83 n n N1 C2 ADX sing 84 n y C2 N3 ADX doub 85 n y C2 H2 ADX sing 86 n n N3 C4 ADX sing 87 n y # _atom_sites.entry_id 4BZQ _atom_sites.fract_transf_matrix[1][1] 0.015642 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014263 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012614 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADX A 1 1613 1613 ADX ADX . D 3 ADP A 1 1614 1614 ADP ADP . E 4 CIT A 1 1615 1615 CIT CIT . F 5 EDO A 1 1616 1616 EDO EDO . G 2 ADX B 1 1613 1613 ADX ADX . H 3 ADP B 1 1614 1614 ADP ADP . I 4 CIT B 1 1615 1615 CIT CIT . J 5 EDO B 1 1616 1616 EDO EDO . K 6 HOH A 1 2001 2001 HOH HOH . K 6 HOH A 2 2002 2002 HOH HOH . K 6 HOH A 3 2003 2003 HOH HOH . K 6 HOH A 4 2004 2004 HOH HOH . K 6 HOH A 5 2005 2005 HOH HOH . K 6 HOH A 6 2006 2006 HOH HOH . K 6 HOH A 7 2007 2007 HOH HOH . K 6 HOH A 8 2008 2008 HOH HOH . K 6 HOH A 9 2009 2009 HOH HOH . K 6 HOH A 10 2010 2010 HOH HOH . K 6 HOH A 11 2011 2011 HOH HOH . K 6 HOH A 12 2012 2012 HOH HOH . K 6 HOH A 13 2013 2013 HOH HOH . K 6 HOH A 14 2014 2014 HOH HOH . K 6 HOH A 15 2015 2015 HOH HOH . K 6 HOH A 16 2016 2016 HOH HOH . K 6 HOH A 17 2017 2017 HOH HOH . K 6 HOH A 18 2018 2018 HOH HOH . K 6 HOH A 19 2019 2019 HOH HOH . K 6 HOH A 20 2020 2020 HOH HOH . K 6 HOH A 21 2021 2021 HOH HOH . K 6 HOH A 22 2022 2022 HOH HOH . K 6 HOH A 23 2023 2023 HOH HOH . K 6 HOH A 24 2024 2024 HOH HOH . K 6 HOH A 25 2025 2025 HOH HOH . K 6 HOH A 26 2026 2026 HOH HOH . K 6 HOH A 27 2027 2027 HOH HOH . K 6 HOH A 28 2028 2028 HOH HOH . K 6 HOH A 29 2029 2029 HOH HOH . K 6 HOH A 30 2030 2030 HOH HOH . K 6 HOH A 31 2031 2031 HOH HOH . K 6 HOH A 32 2032 2032 HOH HOH . K 6 HOH A 33 2033 2033 HOH HOH . K 6 HOH A 34 2034 2034 HOH HOH . K 6 HOH A 35 2035 2035 HOH HOH . L 6 HOH B 1 2001 2001 HOH HOH . L 6 HOH B 2 2002 2002 HOH HOH . L 6 HOH B 3 2003 2003 HOH HOH . L 6 HOH B 4 2004 2004 HOH HOH . L 6 HOH B 5 2005 2005 HOH HOH . L 6 HOH B 6 2006 2006 HOH HOH . L 6 HOH B 7 2007 2007 HOH HOH . L 6 HOH B 8 2008 2008 HOH HOH . L 6 HOH B 9 2009 2009 HOH HOH . L 6 HOH B 10 2010 2010 HOH HOH . L 6 HOH B 11 2011 2011 HOH HOH . L 6 HOH B 12 2012 2012 HOH HOH . L 6 HOH B 13 2013 2013 HOH HOH . L 6 HOH B 14 2014 2014 HOH HOH . L 6 HOH B 15 2015 2015 HOH HOH . L 6 HOH B 16 2016 2016 HOH HOH . L 6 HOH B 17 2017 2017 HOH HOH . L 6 HOH B 18 2018 2018 HOH HOH . L 6 HOH B 19 2019 2019 HOH HOH . L 6 HOH B 20 2020 2020 HOH HOH . L 6 HOH B 21 2021 2021 HOH HOH . L 6 HOH B 22 2022 2022 HOH HOH . L 6 HOH B 23 2023 2023 HOH HOH . L 6 HOH B 24 2024 2024 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S SB ADX . . . G 2 45.659 4.818 -8.816 1 33.45 ? SB ADX 1613 B 1 HETATM 2 O O1B ADX . . . G 2 46.78 4.756 -7.874 1 39.55 ? O1B ADX 1613 B 1 HETATM 3 O O2B ADX . . . G 2 44.417 4.458 -8.073 1 32.18 ? O2B ADX 1613 B 1 HETATM 4 O O3B ADX . . . G 2 45.968 3.951 -9.938 1 32.36 ? O3B ADX 1613 B 1 HETATM 5 P PA ADX . . . G 2 44.737 6.818 -10.52 1 33.58 ? PA ADX 1613 B 1 HETATM 6 O O1A ADX . . . G 2 43.283 6.38 -10.488 1 37.58 ? O1A ADX 1613 B 1 HETATM 7 O O2A ADX . . . G 2 45.719 6.643 -11.635 1 29.63 ? O2A ADX 1613 B 1 HETATM 8 O O3A ADX . . . G 2 45.433 6.289 -9.175 1 32.5 ? O3A ADX 1613 B 1 HETATM 9 O O5' ADX . . . G 2 44.753 8.378 -10.203 1 32.86 ? O5' ADX 1613 B 1 HETATM 10 C C5' ADX . . . G 2 45.982 9.001 -10.07 1 36.28 ? C5' ADX 1613 B 1 HETATM 11 C C4' ADX . . . G 2 45.686 10.464 -10.077 1 38.08 ? C4' ADX 1613 B 1 HETATM 12 O O4' ADX . . . G 2 45.137 10.86 -8.823 1 36.93 ? O4' ADX 1613 B 1 HETATM 13 C C3' ADX . . . G 2 47.028 11.139 -10.255 1 42.11 ? C3' ADX 1613 B 1 HETATM 14 O O3' ADX . . . G 2 47.257 11.47 -11.63 1 52.49 ? O3' ADX 1613 B 1 HETATM 15 C C2' ADX . . . G 2 46.89 12.355 -9.404 1 44.09 ? C2' ADX 1613 B 1 HETATM 16 O O2' ADX . . . G 2 46.454 13.332 -10.33 1 46.77 ? O2' ADX 1613 B 1 HETATM 17 C C1' ADX . . . G 2 45.798 12.055 -8.366 1 44.78 ? C1' ADX 1613 B 1 HETATM 18 N N9 ADX . . . G 2 46.281 11.783 -6.979 1 43.7 ? N9 ADX 1613 B 1 HETATM 19 C C8 ADX . . . G 2 45.786 12.346 -5.866 1 42.14 ? C8 ADX 1613 B 1 HETATM 20 N N7 ADX . . . G 2 46.395 11.903 -4.748 1 39.96 ? N7 ADX 1613 B 1 HETATM 21 C C5 ADX . . . G 2 47.295 11.008 -5.137 1 42.19 ? C5 ADX 1613 B 1 HETATM 22 C C6 ADX . . . G 2 48.282 10.177 -4.439 1 42.84 ? C6 ADX 1613 B 1 HETATM 23 N N6 ADX . . . G 2 48.332 10.281 -3.087 1 38.39 ? N6 ADX 1613 B 1 HETATM 24 N N1 ADX . . . G 2 49.121 9.391 -5.203 1 40.59 ? N1 ADX 1613 B 1 HETATM 25 C C2 ADX . . . G 2 49.028 9.373 -6.548 1 44.95 ? C2 ADX 1613 B 1 HETATM 26 N N3 ADX . . . G 2 48.143 10.121 -7.253 1 39.44 ? N3 ADX 1613 B 1 HETATM 27 C C4 ADX . . . G 2 47.266 10.943 -6.611 1 44.13 ? C4 ADX 1613 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 27 #