data_4C0A # _model_server_result.job_id FJD2iX4eTbmC3RXRj7tksg _model_server_result.datetime_utc '2024-12-22 06:01:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4c0a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":401}' # _entry.id 4C0A # _exptl.entry_id 4C0A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-3'-MONOPHOSPHATE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.13 _cell.angle_gamma 90 _cell.entry_id 4C0A _cell.length_a 90.98 _cell.length_b 65.78 _cell.length_c 196.86 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4C0A _symmetry.cell_setting ? _symmetry.Int_Tables_number 3 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression B,G,K 1 1 A,H,L 2 1 D,E,J 3 1 C,F,I 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id G3D _chem_comp.mon_nstd_flag . _chem_comp.name "GUANOSINE-3'-MONOPHOSPHATE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B G3D doub 83 n n PB O2B G3D sing 84 n n PB O3B G3D sing 85 n n PB O3A G3D sing 86 n n O2B HOB2 G3D sing 87 n n O3B HOB3 G3D sing 88 n n PA O3A G3D sing 89 n n PA O1A G3D doub 90 n n PA O2A G3D sing 91 n n PA O5' G3D sing 92 n n O2A HOA2 G3D sing 93 n n O5' C5' G3D sing 94 n n C5' C4' G3D sing 95 n n C5' "H5'1" G3D sing 96 n n C5' "H5'2" G3D sing 97 n n C4' O4' G3D sing 98 n n C4' C3' G3D sing 99 n n C4' H4' G3D sing 100 n n O4' C1' G3D sing 101 n n C3' O3' G3D sing 102 n n C3' C2' G3D sing 103 n n C3' H3' G3D sing 104 n n O3' P1 G3D sing 105 n n C2' O2' G3D sing 106 n n C2' C1' G3D sing 107 n n C2' H2' G3D sing 108 n n O2' HO2' G3D sing 109 n n C1' N9 G3D sing 110 n n C1' H1' G3D sing 111 n n N9 C8 G3D sing 112 n y N9 C4 G3D sing 113 n y C8 N7 G3D doub 114 n y C8 H8 G3D sing 115 n n N7 C5 G3D sing 116 n y C5 C6 G3D sing 117 n n C5 C4 G3D doub 118 n y C6 O6 G3D doub 119 n n C6 N1 G3D sing 120 n n N1 C2 G3D sing 121 n n N1 HN1 G3D sing 122 n n C2 N2 G3D sing 123 n n C2 N3 G3D doub 124 n n N2 HN21 G3D sing 125 n n N2 HN22 G3D sing 126 n n N3 C4 G3D sing 127 n n P1 O4P G3D sing 128 n n P1 O5P G3D sing 129 n n P1 O6P G3D doub 130 n n O4P HO4P G3D sing 131 n n O5P HO5P G3D sing 132 n n # _atom_sites.entry_id 4C0A _atom_sites.fract_transf_matrix[1][1] 0.010991 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00118 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015202 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005109 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 G3D C 1 401 401 G3D G3D . J 3 G3D D 1 401 401 G3D G3D . K 3 G3D G 1 401 401 G3D G3D . L 3 G3D H 1 401 401 G3D G3D . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB G3D . . . L 3 -55.063 4.105 -69.994 1 100.32 ? PB G3D 401 H 1 HETATM 2 O O1B G3D . . . L 3 -55.975 2.995 -69.468 1 97.5 ? O1B G3D 401 H 1 HETATM 3 O O2B G3D . . . L 3 -54.471 4.947 -68.89 1 100.61 ? O2B G3D 401 H 1 HETATM 4 O O3B G3D . . . L 3 -55.81 4.905 -71.084 1 102.97 ? O3B G3D 401 H 1 HETATM 5 P PA G3D . . . L 3 -53.29 2.228 -71.683 1 102.01 ? PA G3D 401 H 1 HETATM 6 O O3A G3D . . . L 3 -54.146 3.242 -70.903 1 100.44 ? O3A G3D 401 H 1 HETATM 7 O O1A G3D . . . L 3 -54.195 1.87 -72.88 1 101.52 ? O1A G3D 401 H 1 HETATM 8 O O2A G3D . . . L 3 -52.882 1.099 -70.83 1 100.57 ? O2A G3D 401 H 1 HETATM 9 O O5' G3D . . . L 3 -52.095 3.086 -72.371 1 107.72 ? O5' G3D 401 H 1 HETATM 10 C C5' G3D . . . L 3 -52.096 3.743 -73.661 1 112.37 ? C5' G3D 401 H 1 HETATM 11 C C4' G3D . . . L 3 -50.935 3.273 -74.505 1 114.86 ? C4' G3D 401 H 1 HETATM 12 O O4' G3D . . . L 3 -49.737 3.252 -73.707 1 113.59 ? O4' G3D 401 H 1 HETATM 13 C C3' G3D . . . L 3 -51.071 1.885 -75.146 1 114.29 ? C3' G3D 401 H 1 HETATM 14 O O3' G3D . . . L 3 -50.869 1.915 -76.576 1 119.93 ? O3' G3D 401 H 1 HETATM 15 C C2' G3D . . . L 3 -50.026 1.019 -74.433 1 111.1 ? C2' G3D 401 H 1 HETATM 16 O O2' G3D . . . L 3 -49.371 0.115 -75.314 1 112.26 ? O2' G3D 401 H 1 HETATM 17 C C1' G3D . . . L 3 -49.019 2.068 -73.966 1 113.78 ? C1' G3D 401 H 1 HETATM 18 N N9 G3D . . . L 3 -48.317 1.695 -72.736 1 114.61 ? N9 G3D 401 H 1 HETATM 19 C C8 G3D . . . L 3 -48.862 1.35 -71.524 1 112.41 ? C8 G3D 401 H 1 HETATM 20 N N7 G3D . . . L 3 -47.966 1.158 -70.583 1 113.49 ? N7 G3D 401 H 1 HETATM 21 C C5 G3D . . . L 3 -46.754 1.381 -71.218 1 116.71 ? C5 G3D 401 H 1 HETATM 22 C C6 G3D . . . L 3 -45.39 1.293 -70.746 1 117.89 ? C6 G3D 401 H 1 HETATM 23 O O6 G3D . . . L 3 -45.011 1.006 -69.615 1 116.73 ? O6 G3D 401 H 1 HETATM 24 N N1 G3D . . . L 3 -44.471 1.555 -71.745 1 122.16 ? N1 G3D 401 H 1 HETATM 25 C C2 G3D . . . L 3 -44.783 1.864 -73.044 1 124.95 ? C2 G3D 401 H 1 HETATM 26 N N2 G3D . . . L 3 -43.767 2.021 -73.891 1 129.82 ? N2 G3D 401 H 1 HETATM 27 N N3 G3D . . . L 3 -46.032 1.969 -73.495 1 123.42 ? N3 G3D 401 H 1 HETATM 28 C C4 G3D . . . L 3 -46.959 1.711 -72.548 1 118.71 ? C4 G3D 401 H 1 HETATM 29 P P1 G3D . . . L 3 -51.894 1.789 -77.827 1 122.47 ? P1 G3D 401 H 1 HETATM 30 O O4P G3D . . . L 3 -51.335 2.3 -79.128 1 128.29 ? O4P G3D 401 H 1 HETATM 31 O O5P G3D . . . L 3 -52.234 0.298 -77.866 1 120.54 ? O5P G3D 401 H 1 HETATM 32 O O6P G3D . . . L 3 -53.168 2.56 -77.377 1 120.25 ? O6P G3D 401 H 1 # _model_server_stats.io_time_ms 102 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #