data_4C0B # _model_server_result.job_id E1WpxSADoA568tsErlrByg _model_server_result.datetime_utc '2025-02-18 07:08:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4c0b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1446}' # _entry.id 4C0B # _exptl.entry_id 4C0B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4C0B _cell.length_a 89.352 _cell.length_b 95.41 _cell.length_c 182.142 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4C0B _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression B,D,G,H,J,L 1 1 A,C,E,F,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 137 A THR 137 1_555 F MG MG . A MG 1447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc2 E O3G ATP . A ATP 1446 1_555 F MG MG . A MG 1447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc3 E O1B ATP . A ATP 1446 1_555 F MG MG . A MG 1447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc4 B OG1 THR 137 B THR 137 1_555 H MG MG . B MG 1448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc5 G O1B ATP . B ATP 1447 1_555 H MG MG . B MG 1448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? metalc ? metalc6 G O3G ATP . B ATP 1447 1_555 H MG MG . B MG 1448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 4C0B _atom_sites.fract_transf_matrix[1][1] 0.011192 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010481 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00549 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ATP A 1 1446 1446 ATP ATP . F 4 MG A 1 1447 1447 MG MG . G 3 ATP B 1 1447 1447 ATP ATP . H 4 MG B 1 1448 1448 MG MG . I 5 HOH A 1 2001 2001 HOH HOH . I 5 HOH A 2 2002 2002 HOH HOH . I 5 HOH A 3 2003 2003 HOH HOH . I 5 HOH A 4 2004 2004 HOH HOH . I 5 HOH A 5 2005 2005 HOH HOH . I 5 HOH A 6 2006 2006 HOH HOH . I 5 HOH A 7 2007 2007 HOH HOH . I 5 HOH A 8 2008 2008 HOH HOH . I 5 HOH A 9 2009 2009 HOH HOH . I 5 HOH A 10 2010 2010 HOH HOH . I 5 HOH A 11 2011 2011 HOH HOH . I 5 HOH A 12 2012 2012 HOH HOH . I 5 HOH A 13 2013 2013 HOH HOH . I 5 HOH A 14 2014 2014 HOH HOH . I 5 HOH A 15 2015 2015 HOH HOH . I 5 HOH A 16 2016 2016 HOH HOH . I 5 HOH A 17 2017 2017 HOH HOH . I 5 HOH A 18 2018 2018 HOH HOH . I 5 HOH A 19 2019 2019 HOH HOH . J 5 HOH B 1 2001 2001 HOH HOH . J 5 HOH B 2 2002 2002 HOH HOH . J 5 HOH B 3 2003 2003 HOH HOH . J 5 HOH B 4 2004 2004 HOH HOH . J 5 HOH B 5 2005 2005 HOH HOH . J 5 HOH B 6 2006 2006 HOH HOH . J 5 HOH B 7 2007 2007 HOH HOH . J 5 HOH B 8 2008 2008 HOH HOH . J 5 HOH B 9 2009 2009 HOH HOH . J 5 HOH B 10 2010 2010 HOH HOH . J 5 HOH B 11 2011 2011 HOH HOH . J 5 HOH B 12 2012 2012 HOH HOH . J 5 HOH B 13 2013 2013 HOH HOH . J 5 HOH B 14 2014 2014 HOH HOH . J 5 HOH B 15 2015 2015 HOH HOH . J 5 HOH B 16 2016 2016 HOH HOH . J 5 HOH B 17 2017 2017 HOH HOH . J 5 HOH B 18 2018 2018 HOH HOH . K 5 HOH C 1 2001 2001 HOH HOH . L 5 HOH D 1 2001 2001 HOH HOH . L 5 HOH D 2 2002 2002 HOH HOH . L 5 HOH D 3 2003 2003 HOH HOH . L 5 HOH D 4 2004 2004 HOH HOH . L 5 HOH D 5 2005 2005 HOH HOH . L 5 HOH D 6 2006 2006 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . E 3 -21.102 -24.031 48.295 1 134.6 ? PG ATP 1446 A 1 HETATM 2 O O1G ATP . . . E 3 -21.604 -23.155 49.403 1 136.45 ? O1G ATP 1446 A 1 HETATM 3 O O2G ATP . . . E 3 -22.224 -24.644 47.512 1 135.68 ? O2G ATP 1446 A 1 HETATM 4 O O3G ATP . . . E 3 -20.233 -23.273 47.335 1 132.73 ? O3G ATP 1446 A 1 HETATM 5 P PB ATP . . . E 3 -19.102 -26.106 48.546 1 128.99 ? PB ATP 1446 A 1 HETATM 6 O O1B ATP . . . E 3 -18.136 -25.33 47.726 1 126.95 ? O1B ATP 1446 A 1 HETATM 7 O O2B ATP . . . E 3 -19.634 -27.267 47.763 1 128.53 ? O2B ATP 1446 A 1 HETATM 8 O O3B ATP . . . E 3 -20.241 -25.217 48.95 1 133.4 ? O3B ATP 1446 A 1 HETATM 9 P PA ATP . . . E 3 -17.118 -26.24 50.59 1 121.94 ? PA ATP 1446 A 1 HETATM 10 O O1A ATP . . . E 3 -15.913 -26.871 49.917 1 120.09 ? O1A ATP 1446 A 1 HETATM 11 O O2A ATP . . . E 3 -16.969 -24.764 50.55 1 121.05 ? O2A ATP 1446 A 1 HETATM 12 O O3A ATP . . . E 3 -18.362 -26.65 49.861 1 126.19 ? O3A ATP 1446 A 1 HETATM 13 O O5' ATP . . . E 3 -17.194 -26.761 52.106 1 123.97 ? O5' ATP 1446 A 1 HETATM 14 C C5' ATP . . . E 3 -18.092 -26.129 53.045 1 124.71 ? C5' ATP 1446 A 1 HETATM 15 C C4' ATP . . . E 3 -17.407 -25.965 54.383 1 124.75 ? C4' ATP 1446 A 1 HETATM 16 O O4' ATP . . . E 3 -16.876 -27.233 54.835 1 124.89 ? O4' ATP 1446 A 1 HETATM 17 C C3' ATP . . . E 3 -16.256 -24.956 54.449 1 122.93 ? C3' ATP 1446 A 1 HETATM 18 O O3' ATP . . . E 3 -16.397 -24.088 55.57 1 124.82 ? O3' ATP 1446 A 1 HETATM 19 C C2' ATP . . . E 3 -15.013 -25.849 54.539 1 121.3 ? C2' ATP 1446 A 1 HETATM 20 O O2' ATP . . . E 3 -13.917 -25.216 55.189 1 120.1 ? O2' ATP 1446 A 1 HETATM 21 C C1' ATP . . . E 3 -15.568 -27.03 55.33 1 124.11 ? C1' ATP 1446 A 1 HETATM 22 N N9 ATP . . . E 3 -14.816 -28.282 55.221 1 124.22 ? N9 ATP 1446 A 1 HETATM 23 C C8 ATP . . . E 3 -14.383 -28.904 54.078 1 121.52 ? C8 ATP 1446 A 1 HETATM 24 N N7 ATP . . . E 3 -13.767 -30.041 54.287 1 122.67 ? N7 ATP 1446 A 1 HETATM 25 C C5 ATP . . . E 3 -13.799 -30.184 55.667 1 126.48 ? C5 ATP 1446 A 1 HETATM 26 C C6 ATP . . . E 3 -13.332 -31.198 56.53 1 129.02 ? C6 ATP 1446 A 1 HETATM 27 N N6 ATP . . . E 3 -12.704 -32.3 56.109 1 129.55 ? N6 ATP 1446 A 1 HETATM 28 N N1 ATP . . . E 3 -13.53 -31.034 57.861 1 130.48 ? N1 ATP 1446 A 1 HETATM 29 C C2 ATP . . . E 3 -14.147 -29.926 58.291 1 129.93 ? C2 ATP 1446 A 1 HETATM 30 N N3 ATP . . . E 3 -14.639 -28.91 57.573 1 128.25 ? N3 ATP 1446 A 1 HETATM 31 C C4 ATP . . . E 3 -14.434 -29.101 56.257 1 126.97 ? C4 ATP 1446 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #