data_4C0L # _model_server_result.job_id KFo_rNigmEI5UaN4EYUsVA _model_server_result.datetime_utc '2025-02-05 04:44:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4c0l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1617}' # _entry.id 4C0L # _exptl.entry_id 4C0L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 119.119 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description L-HOMOSERINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4C0L _cell.length_a 81.51 _cell.length_b 81.51 _cell.length_c 154.95 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4C0L _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 23 A ASP 223 1_555 F NA NA . A NA 1613 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.788 ? metalc ? metalc2 A OD1 ASP 27 A ASP 227 1_555 F NA NA . A NA 1613 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.99 ? metalc ? metalc3 A O LEU 29 A LEU 229 1_555 F NA NA . A NA 1613 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? metalc ? metalc4 A OE2 GLU 34 A GLU 234 1_555 F NA NA . A NA 1613 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc5 A OD1 ASP 143 A ASP 343 1_555 I MG MG . A MG 1616 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc6 A OD1 ASP 145 A ASP 345 1_555 I MG MG . A MG 1616 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc7 A OD2 ASP 145 A ASP 345 1_555 I MG MG . A MG 1616 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.899 ? metalc ? metalc8 A OD1 ASP 147 A ASP 347 1_555 I MG MG . A MG 1616 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc9 A O ALA 149 A ALA 349 1_555 I MG MG . A MG 1616 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc10 A OE1 GLU 154 A GLU 354 1_555 I MG MG . A MG 1616 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc11 A OG1 THR 260 A THR 460 1_555 H MG MG . A MG 1615 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc12 A OD2 ASP 305 A ASP 505 1_555 H MG MG . A MG 1615 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc13 A OD1 ASP 305 A ASP 505 1_555 H MG MG . A MG 1615 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.832 ? metalc ? metalc14 G O3B GDP . A GDP 1614 1_555 H MG MG . A MG 1615 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc15 H MG MG . A MG 1615 1_555 K O HOH . A HOH 2008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? # _chem_comp.formula 'C4 H9 N O3' _chem_comp.formula_weight 119.119 _chem_comp.id HSE _chem_comp.mon_nstd_flag n _chem_comp.name L-HOMOSERINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA HSE sing 197 n n N H HSE sing 198 n n N H2 HSE sing 199 n n CA C HSE sing 200 n n CA C3 HSE sing 201 n n CA HA HSE sing 202 n n C O HSE doub 203 n n C OXT HSE sing 204 n n C3 C4 HSE sing 205 n n C3 H31 HSE sing 206 n n C3 H32 HSE sing 207 n n OXT HXT HSE sing 208 n n C4 O3 HSE sing 209 n n C4 H41 HSE sing 210 n n C4 H42 HSE sing 211 n n O3 HO3 HSE sing 212 n n # _atom_sites.entry_id 4C0L _atom_sites.fract_transf_matrix[1][1] 0.012268 _atom_sites.fract_transf_matrix[1][2] 0.007083 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014166 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006454 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UNX A 1 1618 1618 UNX UNX . C 3 SO4 A 1 1610 1610 SO4 SO4 . D 3 SO4 A 1 1611 1611 SO4 SO4 . E 3 SO4 A 1 1612 1612 SO4 SO4 . F 4 NA A 1 1613 1613 NA NA . G 5 GDP A 1 1614 1614 GDP GDP . H 6 MG A 1 1615 1615 MG MG . I 6 MG A 1 1616 1616 MG MG . J 7 HSE A 1 1617 1617 HSE HSE . K 8 HOH A 1 2001 2001 HOH HOH . K 8 HOH A 2 2002 2002 HOH HOH . K 8 HOH A 3 2003 2003 HOH HOH . K 8 HOH A 4 2004 2004 HOH HOH . K 8 HOH A 5 2005 2005 HOH HOH . K 8 HOH A 6 2006 2006 HOH HOH . K 8 HOH A 7 2007 2007 HOH HOH . K 8 HOH A 8 2008 2008 HOH HOH . K 8 HOH A 9 2009 2009 HOH HOH . K 8 HOH A 10 2010 2010 HOH HOH . K 8 HOH A 11 2011 2011 HOH HOH . K 8 HOH A 12 2012 2012 HOH HOH . K 8 HOH A 13 2013 2013 HOH HOH . K 8 HOH A 14 2014 2014 HOH HOH . K 8 HOH A 15 2015 2015 HOH HOH . K 8 HOH A 16 2016 2016 HOH HOH . K 8 HOH A 17 2017 2017 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N HSE . . . J 7 -4.395 34.042 -9.377 1 62.96 ? N HSE 1617 A 1 HETATM 2 C CA HSE . . . J 7 -5.825 33.8 -9.404 1 62.95 ? CA HSE 1617 A 1 HETATM 3 C C HSE . . . J 7 -6.34 33.963 -10.805 1 68.77 ? C HSE 1617 A 1 HETATM 4 C C3 HSE . . . J 7 -6.522 34.796 -8.485 1 55.56 ? C3 HSE 1617 A 1 HETATM 5 O O HSE . . . J 7 -6.167 35.061 -11.379 1 70.09 ? O HSE 1617 A 1 HETATM 6 O OXT HSE . . . J 7 -6.922 32.998 -11.346 1 61.29 ? OXT HSE 1617 A 1 HETATM 7 C C4 HSE . . . J 7 -5.856 34.827 -7.115 1 55.89 ? C4 HSE 1617 A 1 HETATM 8 O O3 HSE . . . J 7 -5.822 33.502 -6.57 1 50.17 ? O3 HSE 1617 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 8 #