data_4C1Y # _model_server_result.job_id HtXV3HGLkCl-XGJpToHtlQ _model_server_result.datetime_utc '2024-10-18 15:30:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4c1y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":920}' # _entry.id 4C1Y # _exptl.entry_id 4C1Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4C1Y _cell.length_a 71.211 _cell.length_b 90.335 _cell.length_c 189.168 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4C1Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,BA,CA 1 1 C,D,U,V,W,X,Y,Z,AA,DA,EA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 H N N ? 4 I N N ? 4 K N N ? 4 L N N ? 4 P N N ? 4 R N N ? 4 T N N ? 4 Y N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C VAL 242 A VAL 243 1_555 A N CSX 243 A CSX 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale2 A C CSX 243 A CSX 244 1_555 A N TRP 244 A TRP 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc1 A NE2 HIS 22 A HIS 23 1_555 N CA CA . A CA 1316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc2 N CA CA . A CA 1316 1_555 BA O HOH . A HOH 2014 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc3 N CA CA . A CA 1316 1_555 BA O HOH . A HOH 2015 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? metalc ? metalc4 N CA CA . A CA 1316 1_555 BA O HOH . A HOH 2053 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc5 N CA CA . A CA 1316 1_555 B NE2 HIS 22 B HIS 23 1_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 143 n n C1 C2 GOL sing 144 n n C1 H11 GOL sing 145 n n C1 H12 GOL sing 146 n n O1 HO1 GOL sing 147 n n C2 O2 GOL sing 148 n n C2 C3 GOL sing 149 n n C2 H2 GOL sing 150 n n O2 HO2 GOL sing 151 n n C3 O3 GOL sing 152 n n C3 H31 GOL sing 153 n n C3 H32 GOL sing 154 n n O3 HO3 GOL sing 155 n n # _atom_sites.entry_id 4C1Y _atom_sites.fract_transf_matrix[1][1] 0.014043 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01107 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005286 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 MFB A 1 910 910 MFB MFB . F 4 GOL A 1 920 920 GOL GOL . G 3 MFB A 1 930 930 MFB MFB . H 4 GOL A 1 940 940 GOL GOL . I 4 GOL A 1 950 950 GOL GOL . J 3 MFB A 1 960 960 MFB MFB . K 4 GOL A 1 990 990 GOL GOL . L 4 GOL A 1 991 991 GOL GOL . M 5 PEG A 1 992 992 PEG PEG . N 6 CA A 1 1316 1316 CA CA . O 3 MFB B 1 910 910 MFB MFB . P 4 GOL B 1 920 920 GOL GOL . Q 3 MFB B 1 930 930 MFB MFB . R 4 GOL B 1 950 950 GOL GOL . S 3 MFB B 1 960 960 MFB MFB . T 4 GOL B 1 990 990 GOL GOL . U 3 MFB C 1 910 910 MFB MFB . V 3 MFB C 1 930 930 MFB MFB . W 3 MFB C 1 950 950 MFB MFB . X 3 MFB C 1 960 960 MFB MFB . Y 4 GOL D 1 920 920 GOL GOL . Z 3 MFB D 1 930 930 MFB MFB . AA 3 MFB D 1 960 960 MFB MFB . BA 7 HOH A 1 2001 2001 HOH HOH . BA 7 HOH A 2 2002 2002 HOH HOH . BA 7 HOH A 3 2003 2003 HOH HOH . BA 7 HOH A 4 2004 2004 HOH HOH . BA 7 HOH A 5 2005 2005 HOH HOH . BA 7 HOH A 6 2006 2006 HOH HOH . BA 7 HOH A 7 2007 2007 HOH HOH . BA 7 HOH A 8 2008 2008 HOH HOH . BA 7 HOH A 9 2009 2009 HOH HOH . BA 7 HOH A 10 2010 2010 HOH HOH . BA 7 HOH A 11 2011 2011 HOH HOH . BA 7 HOH A 12 2012 2012 HOH HOH . BA 7 HOH A 13 2013 2013 HOH HOH . BA 7 HOH A 14 2014 2014 HOH HOH . BA 7 HOH A 15 2015 2015 HOH HOH . BA 7 HOH A 16 2016 2016 HOH HOH . BA 7 HOH A 17 2017 2017 HOH HOH . BA 7 HOH A 18 2018 2018 HOH HOH . BA 7 HOH A 19 2019 2019 HOH HOH . BA 7 HOH A 20 2020 2020 HOH HOH . BA 7 HOH A 21 2021 2021 HOH HOH . BA 7 HOH A 22 2022 2022 HOH HOH . BA 7 HOH A 23 2023 2023 HOH HOH . BA 7 HOH A 24 2024 2024 HOH HOH . BA 7 HOH A 25 2025 2025 HOH HOH . BA 7 HOH A 26 2026 2026 HOH HOH . BA 7 HOH A 27 2027 2027 HOH HOH . BA 7 HOH A 28 2028 2028 HOH HOH . BA 7 HOH A 29 2029 2029 HOH HOH . BA 7 HOH A 30 2030 2030 HOH HOH . BA 7 HOH A 31 2031 2031 HOH HOH . BA 7 HOH A 32 2032 2032 HOH HOH . BA 7 HOH A 33 2033 2033 HOH HOH . BA 7 HOH A 34 2034 2034 HOH HOH . BA 7 HOH A 35 2035 2035 HOH HOH . BA 7 HOH A 36 2036 2036 HOH HOH . BA 7 HOH A 37 2037 2037 HOH HOH . BA 7 HOH A 38 2038 2038 HOH HOH . BA 7 HOH A 39 2039 2039 HOH HOH . BA 7 HOH A 40 2040 2040 HOH HOH . BA 7 HOH A 41 2041 2041 HOH HOH . BA 7 HOH A 42 2042 2042 HOH HOH . BA 7 HOH A 43 2043 2043 HOH HOH . BA 7 HOH A 44 2044 2044 HOH HOH . BA 7 HOH A 45 2045 2045 HOH HOH . BA 7 HOH A 46 2046 2046 HOH HOH . BA 7 HOH A 47 2047 2047 HOH HOH . BA 7 HOH A 48 2048 2048 HOH HOH . BA 7 HOH A 49 2049 2049 HOH HOH . BA 7 HOH A 50 2050 2050 HOH HOH . BA 7 HOH A 51 2051 2051 HOH HOH . BA 7 HOH A 52 2052 2052 HOH HOH . BA 7 HOH A 53 2053 2053 HOH HOH . CA 7 HOH B 1 2001 2001 HOH HOH . CA 7 HOH B 2 2002 2002 HOH HOH . CA 7 HOH B 3 2003 2003 HOH HOH . CA 7 HOH B 4 2004 2004 HOH HOH . CA 7 HOH B 5 2005 2005 HOH HOH . CA 7 HOH B 6 2006 2006 HOH HOH . CA 7 HOH B 7 2007 2007 HOH HOH . CA 7 HOH B 8 2008 2008 HOH HOH . CA 7 HOH B 9 2009 2009 HOH HOH . CA 7 HOH B 10 2010 2010 HOH HOH . CA 7 HOH B 11 2011 2011 HOH HOH . CA 7 HOH B 12 2012 2012 HOH HOH . CA 7 HOH B 13 2013 2013 HOH HOH . CA 7 HOH B 14 2014 2014 HOH HOH . CA 7 HOH B 15 2015 2015 HOH HOH . CA 7 HOH B 16 2016 2016 HOH HOH . CA 7 HOH B 17 2017 2017 HOH HOH . CA 7 HOH B 18 2018 2018 HOH HOH . CA 7 HOH B 19 2019 2019 HOH HOH . CA 7 HOH B 20 2020 2020 HOH HOH . CA 7 HOH B 21 2021 2021 HOH HOH . CA 7 HOH B 22 2022 2022 HOH HOH . CA 7 HOH B 23 2023 2023 HOH HOH . CA 7 HOH B 24 2024 2024 HOH HOH . CA 7 HOH B 25 2025 2025 HOH HOH . CA 7 HOH B 26 2026 2026 HOH HOH . CA 7 HOH B 27 2027 2027 HOH HOH . CA 7 HOH B 28 2028 2028 HOH HOH . CA 7 HOH B 29 2029 2029 HOH HOH . CA 7 HOH B 30 2030 2030 HOH HOH . CA 7 HOH B 31 2031 2031 HOH HOH . CA 7 HOH B 32 2032 2032 HOH HOH . CA 7 HOH B 33 2033 2033 HOH HOH . CA 7 HOH B 34 2034 2034 HOH HOH . CA 7 HOH B 35 2035 2035 HOH HOH . CA 7 HOH B 36 2036 2036 HOH HOH . CA 7 HOH B 37 2037 2037 HOH HOH . CA 7 HOH B 38 2038 2038 HOH HOH . CA 7 HOH B 39 2039 2039 HOH HOH . CA 7 HOH B 40 2040 2040 HOH HOH . CA 7 HOH B 41 2041 2041 HOH HOH . CA 7 HOH B 42 2042 2042 HOH HOH . CA 7 HOH B 43 2043 2043 HOH HOH . CA 7 HOH B 44 2044 2044 HOH HOH . CA 7 HOH B 45 2045 2045 HOH HOH . CA 7 HOH B 46 2046 2046 HOH HOH . DA 7 HOH C 1 2001 2001 HOH HOH . DA 7 HOH C 2 2002 2002 HOH HOH . DA 7 HOH C 3 2003 2003 HOH HOH . DA 7 HOH C 4 2004 2004 HOH HOH . DA 7 HOH C 5 2005 2005 HOH HOH . DA 7 HOH C 6 2006 2006 HOH HOH . DA 7 HOH C 7 2007 2007 HOH HOH . DA 7 HOH C 8 2008 2008 HOH HOH . DA 7 HOH C 9 2009 2009 HOH HOH . DA 7 HOH C 10 2010 2010 HOH HOH . DA 7 HOH C 11 2011 2011 HOH HOH . DA 7 HOH C 12 2012 2012 HOH HOH . DA 7 HOH C 13 2013 2013 HOH HOH . DA 7 HOH C 14 2014 2014 HOH HOH . DA 7 HOH C 15 2015 2015 HOH HOH . DA 7 HOH C 16 2016 2016 HOH HOH . DA 7 HOH C 17 2017 2017 HOH HOH . DA 7 HOH C 18 2018 2018 HOH HOH . DA 7 HOH C 19 2019 2019 HOH HOH . EA 7 HOH D 1 2001 2001 HOH HOH . EA 7 HOH D 2 2002 2002 HOH HOH . EA 7 HOH D 3 2003 2003 HOH HOH . EA 7 HOH D 4 2004 2004 HOH HOH . EA 7 HOH D 5 2005 2005 HOH HOH . EA 7 HOH D 6 2006 2006 HOH HOH . EA 7 HOH D 7 2007 2007 HOH HOH . EA 7 HOH D 8 2008 2008 HOH HOH . EA 7 HOH D 9 2009 2009 HOH HOH . EA 7 HOH D 10 2010 2010 HOH HOH . EA 7 HOH D 11 2011 2011 HOH HOH . EA 7 HOH D 12 2012 2012 HOH HOH . EA 7 HOH D 13 2013 2013 HOH HOH . EA 7 HOH D 14 2014 2014 HOH HOH . EA 7 HOH D 15 2015 2015 HOH HOH . EA 7 HOH D 16 2016 2016 HOH HOH . EA 7 HOH D 17 2017 2017 HOH HOH . EA 7 HOH D 18 2018 2018 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . Y 4 15.609 -4.604 22.569 1 32.14 ? C1 GOL 920 D 1 HETATM 2 O O1 GOL . . . Y 4 15.708 -4.778 21.134 1 33.73 ? O1 GOL 920 D 1 HETATM 3 C C2 GOL . . . Y 4 14.54 -5.539 23.162 1 30.23 ? C2 GOL 920 D 1 HETATM 4 O O2 GOL . . . Y 4 13.274 -4.909 23.283 1 25 ? O2 GOL 920 D 1 HETATM 5 C C3 GOL . . . Y 4 14.333 -6.788 22.299 1 30.8 ? C3 GOL 920 D 1 HETATM 6 O O3 GOL . . . Y 4 13.654 -7.757 23.113 1 33.36 ? O3 GOL 920 D 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #