data_4C1Y # _model_server_result.job_id IeYkTfb-yyxIotz4YSQ_Mg _model_server_result.datetime_utc '2024-10-18 15:26:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4c1y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Z","auth_seq_id":930}' # _entry.id 4C1Y # _exptl.entry_id 4C1Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 178.183 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'methyl beta-L-fucopyranoside' _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4C1Y _cell.length_a 71.211 _cell.length_b 90.335 _cell.length_c 189.168 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4C1Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,BA,CA 1 1 C,D,U,V,W,X,Y,Z,AA,DA,EA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N ? 3 J N N ? 3 O N N ? 3 Q N N ? 3 S N N ? 3 U N N ? 3 V N N ? 3 W N N ? 3 X N N ? 3 Z N N ? 3 AA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C VAL 242 A VAL 243 1_555 A N CSX 243 A CSX 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale2 A C CSX 243 A CSX 244 1_555 A N TRP 244 A TRP 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc1 A NE2 HIS 22 A HIS 23 1_555 N CA CA . A CA 1316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc2 N CA CA . A CA 1316 1_555 BA O HOH . A HOH 2014 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc3 N CA CA . A CA 1316 1_555 BA O HOH . A HOH 2015 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? metalc ? metalc4 N CA CA . A CA 1316 1_555 BA O HOH . A HOH 2053 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc5 N CA CA . A CA 1316 1_555 B NE2 HIS 22 B HIS 23 1_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? # _chem_comp.formula 'C7 H14 O5' _chem_comp.formula_weight 178.183 _chem_comp.id MFB _chem_comp.mon_nstd_flag n _chem_comp.name 'methyl beta-L-fucopyranoside' _chem_comp.type l-saccharide _chem_comp.pdbx_synonyms 'BETA-L-METHYL-FUCOSE;methyl 6-deoxy-beta-L-galactopyranoside;methyl beta-L-fucoside;methyl L-fucoside;methyl fucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MFB sing 264 n n C1 O1 MFB sing 265 n n C1 O5 MFB sing 266 n n C1 H1 MFB sing 267 n n C2 C3 MFB sing 268 n n C2 O2 MFB sing 269 n n C2 H2 MFB sing 270 n n C3 C4 MFB sing 271 n n C3 O3 MFB sing 272 n n C3 H3 MFB sing 273 n n C4 C5 MFB sing 274 n n C4 O4 MFB sing 275 n n C4 H4 MFB sing 276 n n C5 C6 MFB sing 277 n n C5 O5 MFB sing 278 n n C5 H5 MFB sing 279 n n C6 H61 MFB sing 280 n n C6 H62 MFB sing 281 n n C6 H63 MFB sing 282 n n O1 CM MFB sing 283 n n O2 HO2 MFB sing 284 n n O3 HO3 MFB sing 285 n n O4 HO4 MFB sing 286 n n CM HM1 MFB sing 287 n n CM HM2 MFB sing 288 n n CM HM3 MFB sing 289 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version MFB LFucp[1Me]b 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 MFB 1-methyl-b-L-fucopyranose 'COMMON NAME' GMML 1 MFB o1-methyl-b-L-fucose 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 # _atom_sites.entry_id 4C1Y _atom_sites.fract_transf_matrix[1][1] 0.014043 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01107 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005286 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 MFB A 1 910 910 MFB MFB . F 4 GOL A 1 920 920 GOL GOL . G 3 MFB A 1 930 930 MFB MFB . H 4 GOL A 1 940 940 GOL GOL . I 4 GOL A 1 950 950 GOL GOL . J 3 MFB A 1 960 960 MFB MFB . K 4 GOL A 1 990 990 GOL GOL . L 4 GOL A 1 991 991 GOL GOL . M 5 PEG A 1 992 992 PEG PEG . N 6 CA A 1 1316 1316 CA CA . O 3 MFB B 1 910 910 MFB MFB . P 4 GOL B 1 920 920 GOL GOL . Q 3 MFB B 1 930 930 MFB MFB . R 4 GOL B 1 950 950 GOL GOL . S 3 MFB B 1 960 960 MFB MFB . T 4 GOL B 1 990 990 GOL GOL . U 3 MFB C 1 910 910 MFB MFB . V 3 MFB C 1 930 930 MFB MFB . W 3 MFB C 1 950 950 MFB MFB . X 3 MFB C 1 960 960 MFB MFB . Y 4 GOL D 1 920 920 GOL GOL . Z 3 MFB D 1 930 930 MFB MFB . AA 3 MFB D 1 960 960 MFB MFB . BA 7 HOH A 1 2001 2001 HOH HOH . BA 7 HOH A 2 2002 2002 HOH HOH . BA 7 HOH A 3 2003 2003 HOH HOH . BA 7 HOH A 4 2004 2004 HOH HOH . BA 7 HOH A 5 2005 2005 HOH HOH . BA 7 HOH A 6 2006 2006 HOH HOH . BA 7 HOH A 7 2007 2007 HOH HOH . BA 7 HOH A 8 2008 2008 HOH HOH . BA 7 HOH A 9 2009 2009 HOH HOH . BA 7 HOH A 10 2010 2010 HOH HOH . BA 7 HOH A 11 2011 2011 HOH HOH . BA 7 HOH A 12 2012 2012 HOH HOH . BA 7 HOH A 13 2013 2013 HOH HOH . BA 7 HOH A 14 2014 2014 HOH HOH . BA 7 HOH A 15 2015 2015 HOH HOH . BA 7 HOH A 16 2016 2016 HOH HOH . BA 7 HOH A 17 2017 2017 HOH HOH . BA 7 HOH A 18 2018 2018 HOH HOH . BA 7 HOH A 19 2019 2019 HOH HOH . BA 7 HOH A 20 2020 2020 HOH HOH . BA 7 HOH A 21 2021 2021 HOH HOH . BA 7 HOH A 22 2022 2022 HOH HOH . BA 7 HOH A 23 2023 2023 HOH HOH . BA 7 HOH A 24 2024 2024 HOH HOH . BA 7 HOH A 25 2025 2025 HOH HOH . BA 7 HOH A 26 2026 2026 HOH HOH . BA 7 HOH A 27 2027 2027 HOH HOH . BA 7 HOH A 28 2028 2028 HOH HOH . BA 7 HOH A 29 2029 2029 HOH HOH . BA 7 HOH A 30 2030 2030 HOH HOH . BA 7 HOH A 31 2031 2031 HOH HOH . BA 7 HOH A 32 2032 2032 HOH HOH . BA 7 HOH A 33 2033 2033 HOH HOH . BA 7 HOH A 34 2034 2034 HOH HOH . BA 7 HOH A 35 2035 2035 HOH HOH . BA 7 HOH A 36 2036 2036 HOH HOH . BA 7 HOH A 37 2037 2037 HOH HOH . BA 7 HOH A 38 2038 2038 HOH HOH . BA 7 HOH A 39 2039 2039 HOH HOH . BA 7 HOH A 40 2040 2040 HOH HOH . BA 7 HOH A 41 2041 2041 HOH HOH . BA 7 HOH A 42 2042 2042 HOH HOH . BA 7 HOH A 43 2043 2043 HOH HOH . BA 7 HOH A 44 2044 2044 HOH HOH . BA 7 HOH A 45 2045 2045 HOH HOH . BA 7 HOH A 46 2046 2046 HOH HOH . BA 7 HOH A 47 2047 2047 HOH HOH . BA 7 HOH A 48 2048 2048 HOH HOH . BA 7 HOH A 49 2049 2049 HOH HOH . BA 7 HOH A 50 2050 2050 HOH HOH . BA 7 HOH A 51 2051 2051 HOH HOH . BA 7 HOH A 52 2052 2052 HOH HOH . BA 7 HOH A 53 2053 2053 HOH HOH . CA 7 HOH B 1 2001 2001 HOH HOH . CA 7 HOH B 2 2002 2002 HOH HOH . CA 7 HOH B 3 2003 2003 HOH HOH . CA 7 HOH B 4 2004 2004 HOH HOH . CA 7 HOH B 5 2005 2005 HOH HOH . CA 7 HOH B 6 2006 2006 HOH HOH . CA 7 HOH B 7 2007 2007 HOH HOH . CA 7 HOH B 8 2008 2008 HOH HOH . CA 7 HOH B 9 2009 2009 HOH HOH . CA 7 HOH B 10 2010 2010 HOH HOH . CA 7 HOH B 11 2011 2011 HOH HOH . CA 7 HOH B 12 2012 2012 HOH HOH . CA 7 HOH B 13 2013 2013 HOH HOH . CA 7 HOH B 14 2014 2014 HOH HOH . CA 7 HOH B 15 2015 2015 HOH HOH . CA 7 HOH B 16 2016 2016 HOH HOH . CA 7 HOH B 17 2017 2017 HOH HOH . CA 7 HOH B 18 2018 2018 HOH HOH . CA 7 HOH B 19 2019 2019 HOH HOH . CA 7 HOH B 20 2020 2020 HOH HOH . CA 7 HOH B 21 2021 2021 HOH HOH . CA 7 HOH B 22 2022 2022 HOH HOH . CA 7 HOH B 23 2023 2023 HOH HOH . CA 7 HOH B 24 2024 2024 HOH HOH . CA 7 HOH B 25 2025 2025 HOH HOH . CA 7 HOH B 26 2026 2026 HOH HOH . CA 7 HOH B 27 2027 2027 HOH HOH . CA 7 HOH B 28 2028 2028 HOH HOH . CA 7 HOH B 29 2029 2029 HOH HOH . CA 7 HOH B 30 2030 2030 HOH HOH . CA 7 HOH B 31 2031 2031 HOH HOH . CA 7 HOH B 32 2032 2032 HOH HOH . CA 7 HOH B 33 2033 2033 HOH HOH . CA 7 HOH B 34 2034 2034 HOH HOH . CA 7 HOH B 35 2035 2035 HOH HOH . CA 7 HOH B 36 2036 2036 HOH HOH . CA 7 HOH B 37 2037 2037 HOH HOH . CA 7 HOH B 38 2038 2038 HOH HOH . CA 7 HOH B 39 2039 2039 HOH HOH . CA 7 HOH B 40 2040 2040 HOH HOH . CA 7 HOH B 41 2041 2041 HOH HOH . CA 7 HOH B 42 2042 2042 HOH HOH . CA 7 HOH B 43 2043 2043 HOH HOH . CA 7 HOH B 44 2044 2044 HOH HOH . CA 7 HOH B 45 2045 2045 HOH HOH . CA 7 HOH B 46 2046 2046 HOH HOH . DA 7 HOH C 1 2001 2001 HOH HOH . DA 7 HOH C 2 2002 2002 HOH HOH . DA 7 HOH C 3 2003 2003 HOH HOH . DA 7 HOH C 4 2004 2004 HOH HOH . DA 7 HOH C 5 2005 2005 HOH HOH . DA 7 HOH C 6 2006 2006 HOH HOH . DA 7 HOH C 7 2007 2007 HOH HOH . DA 7 HOH C 8 2008 2008 HOH HOH . DA 7 HOH C 9 2009 2009 HOH HOH . DA 7 HOH C 10 2010 2010 HOH HOH . DA 7 HOH C 11 2011 2011 HOH HOH . DA 7 HOH C 12 2012 2012 HOH HOH . DA 7 HOH C 13 2013 2013 HOH HOH . DA 7 HOH C 14 2014 2014 HOH HOH . DA 7 HOH C 15 2015 2015 HOH HOH . DA 7 HOH C 16 2016 2016 HOH HOH . DA 7 HOH C 17 2017 2017 HOH HOH . DA 7 HOH C 18 2018 2018 HOH HOH . DA 7 HOH C 19 2019 2019 HOH HOH . EA 7 HOH D 1 2001 2001 HOH HOH . EA 7 HOH D 2 2002 2002 HOH HOH . EA 7 HOH D 3 2003 2003 HOH HOH . EA 7 HOH D 4 2004 2004 HOH HOH . EA 7 HOH D 5 2005 2005 HOH HOH . EA 7 HOH D 6 2006 2006 HOH HOH . EA 7 HOH D 7 2007 2007 HOH HOH . EA 7 HOH D 8 2008 2008 HOH HOH . EA 7 HOH D 9 2009 2009 HOH HOH . EA 7 HOH D 10 2010 2010 HOH HOH . EA 7 HOH D 11 2011 2011 HOH HOH . EA 7 HOH D 12 2012 2012 HOH HOH . EA 7 HOH D 13 2013 2013 HOH HOH . EA 7 HOH D 14 2014 2014 HOH HOH . EA 7 HOH D 15 2015 2015 HOH HOH . EA 7 HOH D 16 2016 2016 HOH HOH . EA 7 HOH D 17 2017 2017 HOH HOH . EA 7 HOH D 18 2018 2018 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MFB . . . Z 3 18.769 -7.401 38.246 1 39.32 ? C1 MFB 930 D 1 HETATM 2 C C2 MFB . . . Z 3 17.606 -8.275 38.698 1 39.56 ? C2 MFB 930 D 1 HETATM 3 C C3 MFB . . . Z 3 16.749 -7.485 39.683 1 38.71 ? C3 MFB 930 D 1 HETATM 4 C C4 MFB . . . Z 3 16.393 -6.088 39.171 1 37.02 ? C4 MFB 930 D 1 HETATM 5 C C5 MFB . . . Z 3 17.657 -5.367 38.695 1 37.24 ? C5 MFB 930 D 1 HETATM 6 C C6 MFB . . . Z 3 17.366 -3.974 38.14 1 35.69 ? C6 MFB 930 D 1 HETATM 7 O O1 MFB . . . Z 3 19.561 -8.05 37.246 1 39.57 ? O1 MFB 930 D 1 HETATM 8 O O2 MFB . . . Z 3 18.095 -9.472 39.322 1 42.18 ? O2 MFB 930 D 1 HETATM 9 O O3 MFB . . . Z 3 15.552 -8.202 39.967 1 38.13 ? O3 MFB 930 D 1 HETATM 10 O O4 MFB . . . Z 3 15.473 -6.174 38.084 1 36.3 ? O4 MFB 930 D 1 HETATM 11 O O5 MFB . . . Z 3 18.261 -6.176 37.698 1 36.74 ? O5 MFB 930 D 1 HETATM 12 C CM MFB . . . Z 3 20.892 -7.506 37.218 1 40.54 ? CM MFB 930 D 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 98 _model_server_stats.create_model_time_ms 86 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 12 #