data_4C3I # _model_server_result.job_id PqMx030XcInbHEVVGiMDPw _model_server_result.datetime_utc '2024-12-27 03:18:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4c3i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":1317}' # _entry.id 4C3I # _exptl.entry_id 4C3I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 18 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.14 _cell.angle_gamma 90 _cell.entry_id 4C3I _cell.length_a 400.53 _cell.length_b 140.22 _cell.length_c 122.89 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4C3I _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetradecameric _pdbx_struct_assembly.oligomeric_count 14 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 18 _struct_asym.id U _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 62 A CYS 62 1_555 R ZN ZN . A ZN 2667 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc2 A SG CYS 65 A CYS 65 1_555 R ZN ZN . A ZN 2667 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc3 A SG CYS 72 A CYS 72 1_555 R ZN ZN . A ZN 2667 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc4 A NE2 HIS 75 A HIS 75 1_555 R ZN ZN . A ZN 2667 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? metalc ? metalc5 A SG CYS 102 A CYS 102 1_555 Q ZN ZN . A ZN 2666 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc6 A SG CYS 105 A CYS 105 1_555 Q ZN ZN . A ZN 2666 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc7 A SG CYS 233 A CYS 233 1_555 Q ZN ZN . A ZN 2666 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc8 A SG CYS 236 A CYS 236 1_555 Q ZN ZN . A ZN 2666 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc9 B OD2 ASP 784 B ASP 784 1_555 S MG MG . B MG 2204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.963 ? metalc ? metalc10 B SG CYS 1104 B CYS 1104 1_555 T ZN ZN . B ZN 2205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc11 B SG CYS 1107 B CYS 1107 1_555 T ZN ZN . B ZN 2205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc12 B SG CYS 1128 B CYS 1128 1_555 T ZN ZN . B ZN 2205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc13 B SG CYS 1131 B CYS 1131 1_555 T ZN ZN . B ZN 2205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc14 I SG CYS 13 I CYS 13 1_555 V ZN ZN . I ZN 1126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? metalc ? metalc15 I SG CYS 30 I CYS 30 1_555 V ZN ZN . I ZN 1126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc16 J SG CYS 7 J CYS 7 1_555 X ZN ZN . J ZN 1070 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc17 J SG CYS 10 J CYS 10 1_555 X ZN ZN . J ZN 1070 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc18 J SG CYS 45 J CYS 45 1_555 X ZN ZN . J ZN 1070 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc19 J SG CYS 46 J CYS 46 1_555 X ZN ZN . J ZN 1070 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc20 L SG CYS 31 L CYS 31 1_555 Z ZN ZN . L ZN 1071 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc21 L SG CYS 34 L CYS 34 1_555 Z ZN ZN . L ZN 1071 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc22 L SG CYS 48 L CYS 48 1_555 Z ZN ZN . L ZN 1071 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc23 L SG CYS 51 L CYS 51 1_555 Z ZN ZN . L ZN 1071 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 235 n n C1 H11 MPD sing 236 n n C1 H12 MPD sing 237 n n C1 H13 MPD sing 238 n n C2 O2 MPD sing 239 n n C2 CM MPD sing 240 n n C2 C3 MPD sing 241 n n O2 HO2 MPD sing 242 n n CM HM1 MPD sing 243 n n CM HM2 MPD sing 244 n n CM HM3 MPD sing 245 n n C3 C4 MPD sing 246 n n C3 H31 MPD sing 247 n n C3 H32 MPD sing 248 n n C4 O4 MPD sing 249 n n C4 C5 MPD sing 250 n n C4 H4 MPD sing 251 n n O4 HO4 MPD sing 252 n n C5 H51 MPD sing 253 n n C5 H52 MPD sing 254 n n C5 H53 MPD sing 255 n n # _atom_sites.entry_id 4C3I _atom_sites.fract_transf_matrix[1][1] 0.002497 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000447 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007132 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008266 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code O 15 SO4 A 1 2664 2664 SO4 SO4 . P 15 SO4 A 1 2665 2665 SO4 SO4 . Q 16 ZN A 1 2666 2666 ZN ZN . R 16 ZN A 1 2667 2667 ZN ZN . S 17 MG B 1 2204 2204 MG MG . T 16 ZN B 1 2205 2205 ZN ZN . U 18 MPD G 1 1317 1317 MPD MPD . V 16 ZN I 1 1126 1126 ZN ZN . W 16 ZN I 1 1127 1127 ZN ZN . X 16 ZN J 1 1070 1070 ZN ZN . Y 15 SO4 K 1 1143 1143 SO4 SO4 . Z 16 ZN L 1 1071 1071 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . U 18 -37.834 -54.345 91.091 1 101.59 ? C1 MPD 1317 G 1 HETATM 2 C C2 MPD . . . U 18 -38.092 -54.886 92.488 1 101.09 ? C2 MPD 1317 G 1 HETATM 3 O O2 MPD . . . U 18 -38.732 -53.838 93.242 1 99.74 ? O2 MPD 1317 G 1 HETATM 4 C CM MPD . . . U 18 -36.788 -55.195 93.188 1 101.3 ? CM MPD 1317 G 1 HETATM 5 C C3 MPD . . . U 18 -38.929 -56.2 92.317 1 102.01 ? C3 MPD 1317 G 1 HETATM 6 C C4 MPD . . . U 18 -39.948 -56.605 93.42 1 103.29 ? C4 MPD 1317 G 1 HETATM 7 O O4 MPD . . . U 18 -39.525 -56.267 94.748 1 104.14 ? O4 MPD 1317 G 1 HETATM 8 C C5 MPD . . . U 18 -41.327 -56.047 93.144 1 103.46 ? C5 MPD 1317 G 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 45 _model_server_stats.query_time_ms 217 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #