data_4C3P
#
_model_server_result.job_id            0naFzq8jT6UpooisO2cuaQ 
_model_server_result.datetime_utc      '2024-11-24 15:45:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4c3p 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1389}' 
#
_entry.id    4C3P 
#
_exptl.entry_id    4C3P 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              505.208 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4C3P 
_cell.length_a            49.927 
_cell.length_b            86.717 
_cell.length_c            153.546 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4C3P 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
#
_chem_comp.formula           'C11 H18 N5 O12 P3' 
_chem_comp.formula_weight    505.208 
_chem_comp.id                ACP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ACP doub 1 n n 
PG O2G ACP sing 2 n n 
PG O3G ACP sing 3 n n 
PG C3B ACP sing 4 n n 
O2G HOG2 ACP sing 5 n n 
O3G HOG3 ACP sing 6 n n 
PB O1B ACP doub 7 n n 
PB O2B ACP sing 8 n n 
PB C3B ACP sing 9 n n 
PB O3A ACP sing 10 n n 
O2B HOB2 ACP sing 11 n n 
C3B H3B1 ACP sing 12 n n 
C3B H3B2 ACP sing 13 n n 
PA O1A ACP doub 14 n n 
PA O2A ACP sing 15 n n 
PA O3A ACP sing 16 n n 
PA O5' ACP sing 17 n n 
O2A HOA2 ACP sing 18 n n 
O5' C5' ACP sing 19 n n 
C5' C4' ACP sing 20 n n 
C5' "H5'1" ACP sing 21 n n 
C5' "H5'2" ACP sing 22 n n 
C4' O4' ACP sing 23 n n 
C4' C3' ACP sing 24 n n 
C4' H4' ACP sing 25 n n 
O4' C1' ACP sing 26 n n 
C3' O3' ACP sing 27 n n 
C3' C2' ACP sing 28 n n 
C3' H3' ACP sing 29 n n 
O3' HO3' ACP sing 30 n n 
C2' O2' ACP sing 31 n n 
C2' C1' ACP sing 32 n n 
C2' H2' ACP sing 33 n n 
O2' HO2' ACP sing 34 n n 
C1' N9 ACP sing 35 n n 
C1' H1' ACP sing 36 n n 
N9 C8 ACP sing 37 n y 
N9 C4 ACP sing 38 n y 
C8 N7 ACP doub 39 n y 
C8 H8 ACP sing 40 n n 
N7 C5 ACP sing 41 n y 
C5 C6 ACP sing 42 n y 
C5 C4 ACP doub 43 n y 
C6 N6 ACP sing 44 n n 
C6 N1 ACP doub 45 n y 
N6 HN61 ACP sing 46 n n 
N6 HN62 ACP sing 47 n n 
N1 C2 ACP sing 48 n y 
C2 N3 ACP doub 49 n y 
C2 H2 ACP sing 50 n n 
N3 C4 ACP sing 51 n y 
#
_atom_sites.entry_id                     4C3P 
_atom_sites.fract_transf_matrix[1][1]    0.020029 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011532 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006513 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 ACP A 1 1389 1389 ACP ACP . 
F 3 ACP D 1 1391 1391 ACP ACP . 
G 4 SO4 D 1 1392 1392 SO4 SO4 . 
H 5 HOH A 1 2001 2001 HOH HOH . 
H 5 HOH A 2 2002 2002 HOH HOH . 
H 5 HOH A 3 2003 2003 HOH HOH . 
H 5 HOH A 4 2004 2004 HOH HOH . 
H 5 HOH A 5 2005 2005 HOH HOH . 
H 5 HOH A 6 2006 2006 HOH HOH . 
H 5 HOH A 7 2007 2007 HOH HOH . 
H 5 HOH A 8 2008 2008 HOH HOH . 
H 5 HOH A 9 2009 2009 HOH HOH . 
H 5 HOH A 10 2010 2010 HOH HOH . 
H 5 HOH A 11 2011 2011 HOH HOH . 
H 5 HOH A 12 2012 2012 HOH HOH . 
H 5 HOH A 13 2013 2013 HOH HOH . 
I 5 HOH B 1 2001 2001 HOH HOH . 
I 5 HOH B 2 2002 2002 HOH HOH . 
I 5 HOH B 3 2003 2003 HOH HOH . 
J 5 HOH D 1 2001 2001 HOH HOH . 
J 5 HOH D 2 2002 2002 HOH HOH . 
J 5 HOH D 3 2003 2003 HOH HOH . 
J 5 HOH D 4 2004 2004 HOH HOH . 
J 5 HOH D 5 2005 2005 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ACP . . . E 3 3.059 16.193 -26.9 1 97.64 ? PG ACP 1389 A 1 
HETATM 2 O O1G ACP . . . E 3 2.433 15.509 -28.234 1 82.99 ? O1G ACP 1389 A 1 
HETATM 3 O O2G ACP . . . E 3 4.554 15.63 -26.611 1 81.86 ? O2G ACP 1389 A 1 
HETATM 4 O O3G ACP . . . E 3 2.223 15.896 -25.709 1 97.24 ? O3G ACP 1389 A 1 
HETATM 5 P PB ACP . . . E 3 4.59 18.666 -26.576 1 76.06 ? PB ACP 1389 A 1 
HETATM 6 O O1B ACP . . . E 3 4.602 18.802 -25.104 1 72.38 ? O1B ACP 1389 A 1 
HETATM 7 O O2B ACP . . . E 3 5.778 17.67 -27.018 1 81.76 ? O2B ACP 1389 A 1 
HETATM 8 C C3B ACP . . . E 3 3.004 17.992 -27.12 1 80.37 ? C3B ACP 1389 A 1 
HETATM 9 P PA ACP . . . E 3 5.088 20.217 -28.835 1 55.15 ? PA ACP 1389 A 1 
HETATM 10 O O1A ACP . . . E 3 6.546 20.333 -29.15 1 55.02 ? O1A ACP 1389 A 1 
HETATM 11 O O2A ACP . . . E 3 4.303 19.172 -29.579 1 55.79 ? O2A ACP 1389 A 1 
HETATM 12 O O3A ACP . . . E 3 4.857 20.101 -27.249 1 63.85 ? O3A ACP 1389 A 1 
HETATM 13 O O5' ACP . . . E 3 4.409 21.655 -29.096 1 55.62 ? O5' ACP 1389 A 1 
HETATM 14 C C5' ACP . . . E 3 3.007 21.868 -28.991 1 52.86 ? C5' ACP 1389 A 1 
HETATM 15 C C4' ACP . . . E 3 2.519 22.458 -30.296 1 52.03 ? C4' ACP 1389 A 1 
HETATM 16 O O4' ACP . . . E 3 3.274 23.617 -30.609 1 53.83 ? O4' ACP 1389 A 1 
HETATM 17 C C3' ACP . . . E 3 2.723 21.502 -31.453 1 52.21 ? C3' ACP 1389 A 1 
HETATM 18 O O3' ACP . . . E 3 1.542 20.724 -31.631 1 55.98 ? O3' ACP 1389 A 1 
HETATM 19 C C2' ACP . . . E 3 3.039 22.377 -32.645 1 52.46 ? C2' ACP 1389 A 1 
HETATM 20 O O2' ACP . . . E 3 1.878 22.763 -33.411 1 55.54 ? O2' ACP 1389 A 1 
HETATM 21 C C1' ACP . . . E 3 3.63 23.61 -32.002 1 50.59 ? C1' ACP 1389 A 1 
HETATM 22 N N9 ACP . . . E 3 5.095 23.576 -32.184 1 45.25 ? N9 ACP 1389 A 1 
HETATM 23 C C8 ACP . . . E 3 6.002 22.968 -31.416 1 42.22 ? C8 ACP 1389 A 1 
HETATM 24 N N7 ACP . . . E 3 7.251 23.176 -31.889 1 40.69 ? N7 ACP 1389 A 1 
HETATM 25 C C5 ACP . . . E 3 7.144 23.926 -32.979 1 37.49 ? C5 ACP 1389 A 1 
HETATM 26 C C6 ACP . . . E 3 8.062 24.508 -33.949 1 36.07 ? C6 ACP 1389 A 1 
HETATM 27 N N6 ACP . . . E 3 9.377 24.296 -33.828 1 36.71 ? N6 ACP 1389 A 1 
HETATM 28 N N1 ACP . . . E 3 7.557 25.237 -34.957 1 35.77 ? N1 ACP 1389 A 1 
HETATM 29 C C2 ACP . . . E 3 6.246 25.449 -35.078 1 36.41 ? C2 ACP 1389 A 1 
HETATM 30 N N3 ACP . . . E 3 5.339 24.96 -34.216 1 38.08 ? N3 ACP 1389 A 1 
HETATM 31 C C4 ACP . . . E 3 5.727 24.198 -33.17 1 41.37 ? C4 ACP 1389 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          18 
_model_server_stats.element_count           31 
#