data_4C50 # _model_server_result.job_id rcCKDu2azyc06NW3vJ3YnQ _model_server_result.datetime_utc '2024-10-23 13:38:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4c50 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1741}' # _entry.id 4C50 # _exptl.entry_id 4C50 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4C50 _cell.length_a 150.59 _cell.length_b 150.59 _cell.length_c 157.35 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4C50 _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 270 A HIS 270 1_555 D FE HEM . A HEM 1741 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc2 D FE HEM . A HEM 1741 1_555 G O HOH . A HOH 2007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? metalc ? metalc3 B NE2 HIS 270 B HIS 270 1_555 F FE HEM . B HEM 1741 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 159 n n CHA C4D HEM doub 160 n n CHA HHA HEM sing 161 n n CHB C4A HEM sing 162 n n CHB C1B HEM doub 163 n n CHB HHB HEM sing 164 n n CHC C4B HEM sing 165 n n CHC C1C HEM doub 166 n n CHC HHC HEM sing 167 n n CHD C4C HEM doub 168 n n CHD C1D HEM sing 169 n n CHD HHD HEM sing 170 n n C1A C2A HEM doub 171 n y C1A NA HEM sing 172 n y C2A C3A HEM sing 173 n y C2A CAA HEM sing 174 n n C3A C4A HEM doub 175 n y C3A CMA HEM sing 176 n n C4A NA HEM sing 177 n y CMA HMA HEM sing 178 n n CMA HMAA HEM sing 179 n n CMA HMAB HEM sing 180 n n CAA CBA HEM sing 181 n n CAA HAA HEM sing 182 n n CAA HAAA HEM sing 183 n n CBA CGA HEM sing 184 n n CBA HBA HEM sing 185 n n CBA HBAA HEM sing 186 n n CGA O1A HEM doub 187 n n CGA O2A HEM sing 188 n n C1B C2B HEM sing 189 n n C1B NB HEM sing 190 n n C2B C3B HEM doub 191 n n C2B CMB HEM sing 192 n n C3B C4B HEM sing 193 n n C3B CAB HEM sing 194 n n C4B NB HEM doub 195 n n CMB HMB HEM sing 196 n n CMB HMBA HEM sing 197 n n CMB HMBB HEM sing 198 n n CAB CBB HEM doub 199 n n CAB HAB HEM sing 200 n n CBB HBB HEM sing 201 n n CBB HBBA HEM sing 202 n n C1C C2C HEM sing 203 n y C1C NC HEM sing 204 n y C2C C3C HEM doub 205 n y C2C CMC HEM sing 206 n n C3C C4C HEM sing 207 n y C3C CAC HEM sing 208 n n C4C NC HEM sing 209 n y CMC HMC HEM sing 210 n n CMC HMCA HEM sing 211 n n CMC HMCB HEM sing 212 n n CAC CBC HEM doub 213 n n CAC HAC HEM sing 214 n n CBC HBC HEM sing 215 n n CBC HBCA HEM sing 216 n n C1D C2D HEM sing 217 n n C1D ND HEM doub 218 n n C2D C3D HEM doub 219 n n C2D CMD HEM sing 220 n n C3D C4D HEM sing 221 n n C3D CAD HEM sing 222 n n C4D ND HEM sing 223 n n CMD HMD HEM sing 224 n n CMD HMDA HEM sing 225 n n CMD HMDB HEM sing 226 n n CAD CBD HEM sing 227 n n CAD HAD HEM sing 228 n n CAD HADA HEM sing 229 n n CBD CGD HEM sing 230 n n CBD HBD HEM sing 231 n n CBD HBDA HEM sing 232 n n CGD O1D HEM doub 233 n n CGD O2D HEM sing 234 n n O2A H2A HEM sing 235 n n O2D H2D HEM sing 236 n n FE NA HEM sing 237 n n FE NB HEM sing 238 n n FE NC HEM sing 239 n n FE ND HEM sing 240 n n # _atom_sites.entry_id 4C50 _atom_sites.fract_transf_matrix[1][1] 0.006641 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006641 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006355 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GLC A 1 1742 1742 GLC GLC . D 3 HEM A 1 1741 1741 HEM HEM . E 4 ACT A 1 1743 1743 ACT ACT . F 3 HEM B 1 1741 1741 HEM HEM . G 5 HOH A 1 2001 2001 HOH HOH . G 5 HOH A 2 2002 2002 HOH HOH . G 5 HOH A 3 2003 2003 HOH HOH . G 5 HOH A 4 2004 2004 HOH HOH . G 5 HOH A 5 2005 2005 HOH HOH . G 5 HOH A 6 2006 2006 HOH HOH . G 5 HOH A 7 2007 2007 HOH HOH . G 5 HOH A 8 2008 2008 HOH HOH . G 5 HOH A 9 2009 2009 HOH HOH . G 5 HOH A 10 2010 2010 HOH HOH . G 5 HOH A 11 2011 2011 HOH HOH . G 5 HOH A 12 2012 2012 HOH HOH . G 5 HOH A 13 2013 2013 HOH HOH . G 5 HOH A 14 2014 2014 HOH HOH . G 5 HOH A 15 2015 2015 HOH HOH . G 5 HOH A 16 2016 2016 HOH HOH . G 5 HOH A 17 2017 2017 HOH HOH . G 5 HOH A 18 2018 2018 HOH HOH . G 5 HOH A 19 2019 2019 HOH HOH . G 5 HOH A 20 2020 2020 HOH HOH . G 5 HOH A 21 2021 2021 HOH HOH . G 5 HOH A 22 2022 2022 HOH HOH . G 5 HOH A 23 2023 2023 HOH HOH . G 5 HOH A 24 2024 2024 HOH HOH . G 5 HOH A 25 2025 2025 HOH HOH . G 5 HOH A 26 2026 2026 HOH HOH . G 5 HOH A 27 2027 2027 HOH HOH . G 5 HOH A 28 2028 2028 HOH HOH . G 5 HOH A 29 2029 2029 HOH HOH . G 5 HOH A 30 2030 2030 HOH HOH . G 5 HOH A 31 2031 2031 HOH HOH . G 5 HOH A 32 2032 2032 HOH HOH . G 5 HOH A 33 2033 2033 HOH HOH . G 5 HOH A 34 2034 2034 HOH HOH . G 5 HOH A 35 2035 2035 HOH HOH . G 5 HOH A 36 2036 2036 HOH HOH . G 5 HOH A 37 2037 2037 HOH HOH . G 5 HOH A 38 2038 2038 HOH HOH . G 5 HOH A 39 2039 2039 HOH HOH . G 5 HOH A 40 2040 2040 HOH HOH . G 5 HOH A 41 2041 2041 HOH HOH . G 5 HOH A 42 2042 2042 HOH HOH . G 5 HOH A 43 2043 2043 HOH HOH . G 5 HOH A 44 2044 2044 HOH HOH . G 5 HOH A 45 2045 2045 HOH HOH . G 5 HOH A 46 2046 2046 HOH HOH . G 5 HOH A 47 2047 2047 HOH HOH . G 5 HOH A 48 2048 2048 HOH HOH . G 5 HOH A 49 2049 2049 HOH HOH . G 5 HOH A 50 2050 2050 HOH HOH . G 5 HOH A 51 2051 2051 HOH HOH . G 5 HOH A 52 2052 2052 HOH HOH . G 5 HOH A 53 2053 2053 HOH HOH . G 5 HOH A 54 2054 2054 HOH HOH . G 5 HOH A 55 2055 2055 HOH HOH . G 5 HOH A 56 2056 2056 HOH HOH . H 5 HOH B 1 2001 2001 HOH HOH . H 5 HOH B 2 2002 2002 HOH HOH . H 5 HOH B 3 2003 2003 HOH HOH . H 5 HOH B 4 2004 2004 HOH HOH . H 5 HOH B 5 2005 2005 HOH HOH . H 5 HOH B 6 2006 2006 HOH HOH . H 5 HOH B 7 2007 2007 HOH HOH . H 5 HOH B 8 2008 2008 HOH HOH . H 5 HOH B 9 2009 2009 HOH HOH . H 5 HOH B 10 2010 2010 HOH HOH . H 5 HOH B 11 2011 2011 HOH HOH . H 5 HOH B 12 2012 2012 HOH HOH . H 5 HOH B 13 2013 2013 HOH HOH . H 5 HOH B 14 2014 2014 HOH HOH . H 5 HOH B 15 2015 2015 HOH HOH . H 5 HOH B 16 2016 2016 HOH HOH . H 5 HOH B 17 2017 2017 HOH HOH . H 5 HOH B 18 2018 2018 HOH HOH . H 5 HOH B 19 2019 2019 HOH HOH . H 5 HOH B 20 2020 2020 HOH HOH . H 5 HOH B 21 2021 2021 HOH HOH . H 5 HOH B 22 2022 2022 HOH HOH . H 5 HOH B 23 2023 2023 HOH HOH . H 5 HOH B 24 2024 2024 HOH HOH . H 5 HOH B 25 2025 2025 HOH HOH . H 5 HOH B 26 2026 2026 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . D 3 37.074 9.149 -26.965 1 21.42 ? CHA HEM 1741 A 1 HETATM 2 C CHB HEM . . . D 3 39.577 10.906 -30.734 1 21.34 ? CHB HEM 1741 A 1 HETATM 3 C CHC HEM . . . D 3 36.091 9.624 -33.529 1 20.71 ? CHC HEM 1741 A 1 HETATM 4 C CHD HEM . . . D 3 33.643 7.669 -29.844 1 22.19 ? CHD HEM 1741 A 1 HETATM 5 C C1A HEM . . . D 3 37.986 9.685 -27.819 1 22.41 ? C1A HEM 1741 A 1 HETATM 6 C C2A HEM . . . D 3 39.298 10.04 -27.346 1 23.85 ? C2A HEM 1741 A 1 HETATM 7 C C3A HEM . . . D 3 39.978 10.515 -28.363 1 22.54 ? C3A HEM 1741 A 1 HETATM 8 C C4A HEM . . . D 3 39.14 10.472 -29.529 1 22.2 ? C4A HEM 1741 A 1 HETATM 9 C CMA HEM . . . D 3 41.416 11.028 -28.304 1 23.48 ? CMA HEM 1741 A 1 HETATM 10 C CAA HEM . . . D 3 39.807 9.933 -25.899 1 27.09 ? CAA HEM 1741 A 1 HETATM 11 C CBA HEM . . . D 3 40.391 8.596 -25.527 1 29.94 ? CBA HEM 1741 A 1 HETATM 12 C CGA HEM . . . D 3 40.716 8.796 -24.059 1 33.3 ? CGA HEM 1741 A 1 HETATM 13 O O1A HEM . . . D 3 41.822 9.328 -23.747 1 29.8 ? O1A HEM 1741 A 1 HETATM 14 O O2A HEM . . . D 3 39.825 8.44 -23.221 1 36.38 ? O2A HEM 1741 A 1 HETATM 15 C C1B HEM . . . D 3 38.816 10.796 -31.825 1 21.33 ? C1B HEM 1741 A 1 HETATM 16 C C2B HEM . . . D 3 39.046 11.355 -33.142 1 21.99 ? C2B HEM 1741 A 1 HETATM 17 C C3B HEM . . . D 3 38.049 10.978 -33.91 1 21.24 ? C3B HEM 1741 A 1 HETATM 18 C C4B HEM . . . D 3 37.202 10.189 -33.093 1 20.13 ? C4B HEM 1741 A 1 HETATM 19 C CMB HEM . . . D 3 40.228 12.213 -33.608 1 23.02 ? CMB HEM 1741 A 1 HETATM 20 C CAB HEM . . . D 3 37.819 11.318 -35.399 1 22.25 ? CAB HEM 1741 A 1 HETATM 21 C CBB HEM . . . D 3 38.103 12.538 -35.858 1 22.02 ? CBB HEM 1741 A 1 HETATM 22 C C1C HEM . . . D 3 35.245 8.925 -32.734 1 21.68 ? C1C HEM 1741 A 1 HETATM 23 C C2C HEM . . . D 3 34.201 8.12 -33.338 1 21.59 ? C2C HEM 1741 A 1 HETATM 24 C C3C HEM . . . D 3 33.511 7.57 -32.33 1 20.84 ? C3C HEM 1741 A 1 HETATM 25 C C4C HEM . . . D 3 34.121 8.017 -31.08 1 22.22 ? C4C HEM 1741 A 1 HETATM 26 C CMC HEM . . . D 3 33.986 7.993 -34.874 1 21.27 ? CMC HEM 1741 A 1 HETATM 27 C CAC HEM . . . D 3 32.306 6.639 -32.44 1 19.86 ? CAC HEM 1741 A 1 HETATM 28 C CBC HEM . . . D 3 31.405 6.773 -33.411 1 19.42 ? CBC HEM 1741 A 1 HETATM 29 C C1D HEM . . . D 3 34.256 7.987 -28.68 1 21.63 ? C1D HEM 1741 A 1 HETATM 30 C C2D HEM . . . D 3 33.725 7.838 -27.362 1 21.62 ? C2D HEM 1741 A 1 HETATM 31 C C3D HEM . . . D 3 34.824 8.258 -26.426 1 21.92 ? C3D HEM 1741 A 1 HETATM 32 C C4D HEM . . . D 3 35.885 8.666 -27.312 1 21.52 ? C4D HEM 1741 A 1 HETATM 33 C CMD HEM . . . D 3 32.356 7.323 -26.927 1 23.27 ? CMD HEM 1741 A 1 HETATM 34 C CAD HEM . . . D 3 34.695 8.278 -24.893 1 23.29 ? CAD HEM 1741 A 1 HETATM 35 C CBD HEM . . . D 3 35.554 7.242 -24.148 1 23.67 ? CBD HEM 1741 A 1 HETATM 36 C CGD HEM . . . D 3 35.022 7.035 -22.731 1 24.34 ? CGD HEM 1741 A 1 HETATM 37 O O1D HEM . . . D 3 35.755 6.497 -21.848 1 26.48 ? O1D HEM 1741 A 1 HETATM 38 O O2D HEM . . . D 3 33.843 7.387 -22.451 1 24.07 ? O2D HEM 1741 A 1 HETATM 39 N NA HEM . . . D 3 37.899 9.953 -29.191 1 21.67 ? NA HEM 1741 A 1 HETATM 40 N NB HEM . . . D 3 37.667 10.087 -31.818 1 20.96 ? NB HEM 1741 A 1 HETATM 41 N NC HEM . . . D 3 35.198 8.866 -31.34 1 21.12 ? NC HEM 1741 A 1 HETATM 42 N ND HEM . . . D 3 35.525 8.495 -28.623 1 21.97 ? ND HEM 1741 A 1 HETATM 43 FE FE HEM . . . D 3 36.523 9.519 -30.262 1 23.1 ? FE HEM 1741 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 227 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 43 #