data_4C51 # _model_server_result.job_id 14dRDWOsYi7HGt7jn1ZH3w _model_server_result.datetime_utc '2024-11-21 23:51:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4c51 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1741}' # _entry.id 4C51 # _exptl.entry_id 4C51 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4C51 _cell.length_a 150.69 _cell.length_b 150.69 _cell.length_c 157.12 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4C51 _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 270 A HIS 270 1_555 C FE HEM . A HEM 1741 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc2 B NE2 HIS 270 B HIS 270 1_555 E FE HEM . B HEM 1741 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 153 n n CHA C4D HEM doub 154 n n CHA HHA HEM sing 155 n n CHB C4A HEM sing 156 n n CHB C1B HEM doub 157 n n CHB HHB HEM sing 158 n n CHC C4B HEM sing 159 n n CHC C1C HEM doub 160 n n CHC HHC HEM sing 161 n n CHD C4C HEM doub 162 n n CHD C1D HEM sing 163 n n CHD HHD HEM sing 164 n n C1A C2A HEM doub 165 n y C1A NA HEM sing 166 n y C2A C3A HEM sing 167 n y C2A CAA HEM sing 168 n n C3A C4A HEM doub 169 n y C3A CMA HEM sing 170 n n C4A NA HEM sing 171 n y CMA HMA HEM sing 172 n n CMA HMAA HEM sing 173 n n CMA HMAB HEM sing 174 n n CAA CBA HEM sing 175 n n CAA HAA HEM sing 176 n n CAA HAAA HEM sing 177 n n CBA CGA HEM sing 178 n n CBA HBA HEM sing 179 n n CBA HBAA HEM sing 180 n n CGA O1A HEM doub 181 n n CGA O2A HEM sing 182 n n C1B C2B HEM sing 183 n n C1B NB HEM sing 184 n n C2B C3B HEM doub 185 n n C2B CMB HEM sing 186 n n C3B C4B HEM sing 187 n n C3B CAB HEM sing 188 n n C4B NB HEM doub 189 n n CMB HMB HEM sing 190 n n CMB HMBA HEM sing 191 n n CMB HMBB HEM sing 192 n n CAB CBB HEM doub 193 n n CAB HAB HEM sing 194 n n CBB HBB HEM sing 195 n n CBB HBBA HEM sing 196 n n C1C C2C HEM sing 197 n y C1C NC HEM sing 198 n y C2C C3C HEM doub 199 n y C2C CMC HEM sing 200 n n C3C C4C HEM sing 201 n y C3C CAC HEM sing 202 n n C4C NC HEM sing 203 n y CMC HMC HEM sing 204 n n CMC HMCA HEM sing 205 n n CMC HMCB HEM sing 206 n n CAC CBC HEM doub 207 n n CAC HAC HEM sing 208 n n CBC HBC HEM sing 209 n n CBC HBCA HEM sing 210 n n C1D C2D HEM sing 211 n n C1D ND HEM doub 212 n n C2D C3D HEM doub 213 n n C2D CMD HEM sing 214 n n C3D C4D HEM sing 215 n n C3D CAD HEM sing 216 n n C4D ND HEM sing 217 n n CMD HMD HEM sing 218 n n CMD HMDA HEM sing 219 n n CMD HMDB HEM sing 220 n n CAD CBD HEM sing 221 n n CAD HAD HEM sing 222 n n CAD HADA HEM sing 223 n n CBD CGD HEM sing 224 n n CBD HBD HEM sing 225 n n CBD HBDA HEM sing 226 n n CGD O1D HEM doub 227 n n CGD O2D HEM sing 228 n n O2A H2A HEM sing 229 n n O2D H2D HEM sing 230 n n FE NA HEM sing 231 n n FE NB HEM sing 232 n n FE NC HEM sing 233 n n FE ND HEM sing 234 n n # _atom_sites.entry_id 4C51 _atom_sites.fract_transf_matrix[1][1] 0.006636 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006636 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006365 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 1741 1741 HEM HEM . D 3 GLC A 1 1742 1742 GLC GLC . E 2 HEM B 1 1741 1741 HEM HEM . F 3 GLC B 1 1742 1742 GLC GLC . G 4 HOH A 1 2001 2001 HOH HOH . G 4 HOH A 2 2002 2002 HOH HOH . G 4 HOH A 3 2003 2003 HOH HOH . H 4 HOH B 1 2001 2001 HOH HOH . H 4 HOH B 2 2002 2002 HOH HOH . H 4 HOH B 3 2003 2003 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 2 42.178 10.251 47.586 1 27.34 ? CHA HEM 1741 A 1 HETATM 2 C CHB HEM . . . C 2 44.192 11.18 43.242 1 26.83 ? CHB HEM 1741 A 1 HETATM 3 C CHC HEM . . . C 2 40.163 9.604 41.126 1 26.83 ? CHC HEM 1741 A 1 HETATM 4 C CHD HEM . . . C 2 38.247 8.485 45.418 1 24.49 ? CHD HEM 1741 A 1 HETATM 5 C C1A HEM . . . C 2 43.068 10.582 46.567 1 28.61 ? C1A HEM 1741 A 1 HETATM 6 C C2A HEM . . . C 2 44.455 11.019 46.773 1 29.7 ? C2A HEM 1741 A 1 HETATM 7 C C3A HEM . . . C 2 44.981 11.286 45.579 1 29.53 ? C3A HEM 1741 A 1 HETATM 8 C C4A HEM . . . C 2 43.986 11.018 44.574 1 27.38 ? C4A HEM 1741 A 1 HETATM 9 C CMA HEM . . . C 2 46.421 11.782 45.322 1 31.43 ? CMA HEM 1741 A 1 HETATM 10 C CAA HEM . . . C 2 45.209 11.207 48.103 1 29.4 ? CAA HEM 1741 A 1 HETATM 11 C CBA HEM . . . C 2 45.82 9.926 48.614 1 32.88 ? CBA HEM 1741 A 1 HETATM 12 C CGA HEM . . . C 2 45.956 10.048 50.118 1 36.8 ? CGA HEM 1741 A 1 HETATM 13 O O1A HEM . . . C 2 46.861 10.819 50.573 1 35.25 ? O1A HEM 1741 A 1 HETATM 14 O O2A HEM . . . C 2 45.165 9.368 50.861 1 40.69 ? O2A HEM 1741 A 1 HETATM 15 C C1B HEM . . . C 2 43.247 10.838 42.303 1 29.17 ? C1B HEM 1741 A 1 HETATM 16 C C2B HEM . . . C 2 43.43 10.944 40.861 1 30.15 ? C2B HEM 1741 A 1 HETATM 17 C C3B HEM . . . C 2 42.328 10.512 40.277 1 28.78 ? C3B HEM 1741 A 1 HETATM 18 C C4B HEM . . . C 2 41.405 10.116 41.324 1 27.31 ? C4B HEM 1741 A 1 HETATM 19 C CMB HEM . . . C 2 44.684 11.472 40.122 1 31.77 ? CMB HEM 1741 A 1 HETATM 20 C CAB HEM . . . C 2 42.12 10.485 38.753 1 29.77 ? CAB HEM 1741 A 1 HETATM 21 C CBB HEM . . . C 2 41.606 11.594 38.197 1 31.39 ? CBB HEM 1741 A 1 HETATM 22 C C1C HEM . . . C 2 39.354 9.064 42.085 1 25.44 ? C1C HEM 1741 A 1 HETATM 23 C C2C HEM . . . C 2 38.176 8.243 41.839 1 23.65 ? C2C HEM 1741 A 1 HETATM 24 C C3C HEM . . . C 2 37.663 7.94 43.033 1 23.43 ? C3C HEM 1741 A 1 HETATM 25 C C4C HEM . . . C 2 38.492 8.561 44.054 1 25.02 ? C4C HEM 1741 A 1 HETATM 26 C CMC HEM . . . C 2 37.667 7.842 40.442 1 22.68 ? CMC HEM 1741 A 1 HETATM 27 C CAC HEM . . . C 2 36.428 7.096 43.407 1 23.05 ? CAC HEM 1741 A 1 HETATM 28 C CBC HEM . . . C 2 35.375 6.922 42.605 1 23.29 ? CBC HEM 1741 A 1 HETATM 29 C C1D HEM . . . C 2 39.069 8.932 46.423 1 24.53 ? C1D HEM 1741 A 1 HETATM 30 C C2D HEM . . . C 2 38.734 8.927 47.824 1 24.36 ? C2D HEM 1741 A 1 HETATM 31 C C3D HEM . . . C 2 39.967 9.461 48.554 1 24.45 ? C3D HEM 1741 A 1 HETATM 32 C C4D HEM . . . C 2 40.907 9.75 47.476 1 24.95 ? C4D HEM 1741 A 1 HETATM 33 C CMD HEM . . . C 2 37.402 8.465 48.423 1 23.58 ? CMD HEM 1741 A 1 HETATM 34 C CAD HEM . . . C 2 40.08 9.679 50.082 1 24.6 ? CAD HEM 1741 A 1 HETATM 35 C CBD HEM . . . C 2 40.893 8.625 50.831 1 26.25 ? CBD HEM 1741 A 1 HETATM 36 C CGD HEM . . . C 2 40.933 8.879 52.345 1 28.16 ? CGD HEM 1741 A 1 HETATM 37 O O1D HEM . . . C 2 41.719 8.191 53.075 1 29.12 ? O1D HEM 1741 A 1 HETATM 38 O O2D HEM . . . C 2 40.186 9.763 52.874 1 28.63 ? O2D HEM 1741 A 1 HETATM 39 N NA HEM . . . C 2 42.823 10.581 45.198 1 26.96 ? NA HEM 1741 A 1 HETATM 40 N NB HEM . . . C 2 41.977 10.321 42.551 1 27.3 ? NB HEM 1741 A 1 HETATM 41 N NC HEM . . . C 2 39.527 9.256 43.437 1 25.51 ? NC HEM 1741 A 1 HETATM 42 N ND HEM . . . C 2 40.352 9.423 46.258 1 24.49 ? ND HEM 1741 A 1 HETATM 43 FE FE HEM . . . C 2 40.975 10.023 44.347 1 27.51 ? FE HEM 1741 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 43 #