data_4C59 # _model_server_result.job_id ExuQPUFEYeBrb8kOa2lYTQ _model_server_result.datetime_utc '2024-11-30 02:50:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4c59 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1334}' # _entry.id 4C59 # _exptl.entry_id 4C59 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 365.383 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(2Z,3E)-2,3'-BIINDOLE-2',3(1H,1'H)-DIONE 3-{O-[(3R)-3,4-DIHYDROXYBUTYL]OXIME}" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.46 _cell.angle_gamma 90 _cell.entry_id 4C59 _cell.length_a 174.268 _cell.length_b 37.753 _cell.length_c 75.546 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4C59 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 22 B CYS 23 1_555 B SG CYS 93 B CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? disulf ? disulf2 B SG CYS 47 B CYS 55 1_555 B SG CYS 99 B CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? # _chem_comp.formula 'C20 H19 N3 O4' _chem_comp.formula_weight 365.383 _chem_comp.id FEF _chem_comp.mon_nstd_flag . _chem_comp.name "(2Z,3E)-2,3'-BIINDOLE-2',3(1H,1'H)-DIONE 3-{O-[(3R)-3,4-DIHYDROXYBUTYL]OXIME}" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAV CAT FEF doub 83 n n CAT CAR FEF sing 84 n n CAT NAU FEF sing 85 n n CAR CAS FEF sing 86 n n CAR CAI FEF doub 87 z n CAS CAX FEF sing 88 n y CAS CAW FEF doub 89 n y CAX CAY FEF doub 90 n y CAY CAZ FEF sing 91 n y CAZ CBA FEF doub 92 n y CBA CAW FEF sing 93 n y CAW NAU FEF sing 94 n n CAI CAG FEF sing 95 n n CAI NAH FEF sing 96 n n CAG CAD FEF sing 97 n n CAG NAJ FEF doub 98 n n CAD CAC FEF doub 99 n y CAD CAE FEF sing 100 n y CAC CAA FEF sing 101 n y CAA CAB FEF doub 102 n y CAB CAF FEF sing 103 e y CAF CAE FEF doub 104 n y CAE NAH FEF sing 105 n n NAJ OAK FEF sing 106 n n OAK CAL FEF sing 107 n n CAL CAM FEF sing 108 n n CAM CAN FEF sing 109 n n CAN OAQ FEF sing 110 n n CAN CAO FEF sing 111 n n CAO OAP FEF sing 112 n n NAU HAU FEF sing 113 n n CAX HAX FEF sing 114 n n CAY HAY FEF sing 115 n n CAZ HAZ FEF sing 116 n n CBA HBA FEF sing 117 n n CAC HAC FEF sing 118 n n CAA HAA FEF sing 119 n n CAB HAB FEF sing 120 n n CAF HAF FEF sing 121 n n CAL HAL1 FEF sing 122 n n CAL HAL2 FEF sing 123 n n CAM HAM1 FEF sing 124 n n CAM HAM2 FEF sing 125 n n CAN HAN FEF sing 126 n n OAQ HAQ FEF sing 127 n n CAO HAO1 FEF sing 128 n n CAO HAO2 FEF sing 129 n n OAP HAP FEF sing 130 n n NAH HN1 FEF sing 131 n n # _atom_sites.entry_id 4C59 _atom_sites.fract_transf_matrix[1][1] 0.005738 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002256 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026488 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014223 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 FEF A 1 1334 1334 FEF FEF . D 4 HOH A 1 2001 2001 HOH HOH . D 4 HOH A 2 2002 2002 HOH HOH . D 4 HOH A 3 2003 2003 HOH HOH . D 4 HOH A 4 2004 2004 HOH HOH . D 4 HOH A 5 2005 2005 HOH HOH . D 4 HOH A 6 2006 2006 HOH HOH . D 4 HOH A 7 2007 2007 HOH HOH . D 4 HOH A 8 2008 2008 HOH HOH . D 4 HOH A 9 2009 2009 HOH HOH . D 4 HOH A 10 2010 2010 HOH HOH . D 4 HOH A 11 2011 2011 HOH HOH . D 4 HOH A 12 2012 2012 HOH HOH . D 4 HOH A 13 2013 2013 HOH HOH . D 4 HOH A 14 2014 2014 HOH HOH . D 4 HOH A 15 2015 2015 HOH HOH . D 4 HOH A 16 2016 2016 HOH HOH . D 4 HOH A 17 2017 2017 HOH HOH . D 4 HOH A 18 2018 2018 HOH HOH . D 4 HOH A 19 2019 2019 HOH HOH . D 4 HOH A 20 2020 2020 HOH HOH . D 4 HOH A 21 2021 2021 HOH HOH . D 4 HOH A 22 2022 2022 HOH HOH . D 4 HOH A 23 2023 2023 HOH HOH . D 4 HOH A 24 2024 2024 HOH HOH . D 4 HOH A 25 2025 2025 HOH HOH . D 4 HOH A 26 2026 2026 HOH HOH . D 4 HOH A 27 2027 2027 HOH HOH . D 4 HOH A 28 2028 2028 HOH HOH . D 4 HOH A 29 2029 2029 HOH HOH . D 4 HOH A 30 2030 2030 HOH HOH . D 4 HOH A 31 2031 2031 HOH HOH . D 4 HOH A 32 2032 2032 HOH HOH . D 4 HOH A 33 2033 2033 HOH HOH . D 4 HOH A 34 2034 2034 HOH HOH . D 4 HOH A 35 2035 2035 HOH HOH . D 4 HOH A 36 2036 2036 HOH HOH . D 4 HOH A 37 2037 2037 HOH HOH . D 4 HOH A 38 2038 2038 HOH HOH . D 4 HOH A 39 2039 2039 HOH HOH . D 4 HOH A 40 2040 2040 HOH HOH . D 4 HOH A 41 2041 2041 HOH HOH . D 4 HOH A 42 2042 2042 HOH HOH . E 4 HOH B 1 2001 2001 HOH HOH . E 4 HOH B 2 2002 2002 HOH HOH . E 4 HOH B 3 2003 2003 HOH HOH . E 4 HOH B 4 2004 2004 HOH HOH . E 4 HOH B 5 2005 2005 HOH HOH . E 4 HOH B 6 2006 2006 HOH HOH . E 4 HOH B 7 2007 2007 HOH HOH . E 4 HOH B 8 2008 2008 HOH HOH . E 4 HOH B 9 2009 2009 HOH HOH . E 4 HOH B 10 2010 2010 HOH HOH . E 4 HOH B 11 2011 2011 HOH HOH . E 4 HOH B 12 2012 2012 HOH HOH . E 4 HOH B 13 2013 2013 HOH HOH . E 4 HOH B 14 2014 2014 HOH HOH . E 4 HOH B 15 2015 2015 HOH HOH . E 4 HOH B 16 2016 2016 HOH HOH . E 4 HOH B 17 2017 2017 HOH HOH . E 4 HOH B 18 2018 2018 HOH HOH . E 4 HOH B 19 2019 2019 HOH HOH . E 4 HOH B 20 2020 2020 HOH HOH . E 4 HOH B 21 2021 2021 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAV FEF . . . C 3 28.016 24.188 -57.03 1 65.93 ? OAV FEF 1334 A 1 HETATM 2 C CAT FEF . . . C 3 27.169 23.737 -56.251 1 67.54 ? CAT FEF 1334 A 1 HETATM 3 C CAR FEF . . . C 3 26.825 22.31 -56.025 1 62.22 ? CAR FEF 1334 A 1 HETATM 4 C CAS FEF . . . C 3 25.787 22.294 -55.014 1 61.16 ? CAS FEF 1334 A 1 HETATM 5 C CAX FEF . . . C 3 25.056 21.293 -54.381 1 61.51 ? CAX FEF 1334 A 1 HETATM 6 C CAY FEF . . . C 3 24.092 21.626 -53.439 1 60.14 ? CAY FEF 1334 A 1 HETATM 7 C CAZ FEF . . . C 3 23.84 22.954 -53.121 1 59.52 ? CAZ FEF 1334 A 1 HETATM 8 C CBA FEF . . . C 3 24.554 23.976 -53.734 1 61.97 ? CBA FEF 1334 A 1 HETATM 9 C CAW FEF . . . C 3 25.525 23.636 -54.676 1 64.16 ? CAW FEF 1334 A 1 HETATM 10 N NAU FEF . . . C 3 26.366 24.462 -55.427 1 67.77 ? NAU FEF 1334 A 1 HETATM 11 C CAI FEF . . . C 3 27.391 21.226 -56.723 1 64.78 ? CAI FEF 1334 A 1 HETATM 12 C CAG FEF . . . C 3 27.142 19.802 -56.514 1 69.57 ? CAG FEF 1334 A 1 HETATM 13 C CAD FEF . . . C 3 27.972 19.104 -57.509 1 66.65 ? CAD FEF 1334 A 1 HETATM 14 C CAC FEF . . . C 3 28.163 17.767 -57.856 1 65.41 ? CAC FEF 1334 A 1 HETATM 15 C CAA FEF . . . C 3 29.013 17.442 -58.907 1 67.16 ? CAA FEF 1334 A 1 HETATM 16 C CAB FEF . . . C 3 29.681 18.438 -59.617 1 65.51 ? CAB FEF 1334 A 1 HETATM 17 C CAF FEF . . . C 3 29.515 19.776 -59.289 1 62.44 ? CAF FEF 1334 A 1 HETATM 18 C CAE FEF . . . C 3 28.661 20.098 -58.238 1 64.27 ? CAE FEF 1334 A 1 HETATM 19 N NAH FEF . . . C 3 28.305 21.351 -57.749 1 63.46 ? NAH FEF 1334 A 1 HETATM 20 N NAJ FEF . . . C 3 26.357 19.375 -55.586 1 72.92 ? NAJ FEF 1334 A 1 HETATM 21 O OAK FEF . . . C 3 26.274 17.964 -55.479 1 81.04 ? OAK FEF 1334 A 1 HETATM 22 C CAL FEF . . . C 3 25.372 17.64 -54.415 1 79.87 ? CAL FEF 1334 A 1 HETATM 23 C CAM FEF . . . C 3 25.88 16.383 -53.758 1 82.48 ? CAM FEF 1334 A 1 HETATM 24 C CAN FEF . . . C 3 26.256 16.635 -52.307 1 87.18 ? CAN FEF 1334 A 1 HETATM 25 O OAQ FEF . . . C 3 25.165 17.282 -51.645 1 83.3 ? OAQ FEF 1334 A 1 HETATM 26 C CAO FEF . . . C 3 26.578 15.325 -51.628 1 89.8 ? CAO FEF 1334 A 1 HETATM 27 O OAP FEF . . . C 3 25.819 15.181 -50.438 1 94.3 ? OAP FEF 1334 A 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #