data_4C5D # _model_server_result.job_id UhXpMjjcIdKg2VAFofZr1g _model_server_result.datetime_utc '2024-11-22 20:22:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4c5d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1201}' # _entry.id 4C5D # _exptl.entry_id 4C5D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4C5D _cell.length_a 64.138 _cell.length_b 64.138 _cell.length_c 132.376 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4C5D _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_554 -x,-x+y,-z-1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -44.125333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 P N N ? 4 Q N N ? 4 R N N ? 4 S N N ? 4 T N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 4C5D _atom_sites.fract_transf_matrix[1][1] 0.015591 _atom_sites.fract_transf_matrix[1][2] 0.009002 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018003 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007554 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 X0R A 1 2000 2000 X0R X0R . D 3 SO4 A 1 1197 1197 SO4 SO4 . E 3 SO4 A 1 1198 1198 SO4 SO4 . F 3 SO4 A 1 1199 1199 SO4 SO4 . G 4 EDO A 1 1200 1200 EDO EDO . H 4 EDO A 1 1201 1201 EDO EDO . I 4 EDO A 1 1202 1202 EDO EDO . J 4 EDO A 1 1203 1203 EDO EDO . K 4 EDO A 1 1204 1204 EDO EDO . L 2 X0R B 1 2000 2000 X0R X0R . M 3 SO4 B 1 1199 1199 SO4 SO4 . N 3 SO4 B 1 1200 1200 SO4 SO4 . O 3 SO4 B 1 1201 1201 SO4 SO4 . P 4 EDO B 1 1202 1202 EDO EDO . Q 4 EDO B 1 1203 1203 EDO EDO . R 4 EDO B 1 1204 1204 EDO EDO . S 4 EDO B 1 1205 1205 EDO EDO . T 4 EDO B 1 1206 1206 EDO EDO . U 5 HOH A 1 2001 2001 HOH HOH . U 5 HOH A 2 2002 2002 HOH HOH . U 5 HOH A 3 2003 2003 HOH HOH . U 5 HOH A 4 2004 2004 HOH HOH . U 5 HOH A 5 2005 2005 HOH HOH . U 5 HOH A 6 2006 2006 HOH HOH . U 5 HOH A 7 2007 2007 HOH HOH . U 5 HOH A 8 2008 2008 HOH HOH . U 5 HOH A 9 2009 2009 HOH HOH . U 5 HOH A 10 2010 2010 HOH HOH . U 5 HOH A 11 2011 2011 HOH HOH . U 5 HOH A 12 2012 2012 HOH HOH . U 5 HOH A 13 2013 2013 HOH HOH . U 5 HOH A 14 2014 2014 HOH HOH . U 5 HOH A 15 2015 2015 HOH HOH . U 5 HOH A 16 2016 2016 HOH HOH . U 5 HOH A 17 2017 2017 HOH HOH . U 5 HOH A 18 2018 2018 HOH HOH . U 5 HOH A 19 2019 2019 HOH HOH . U 5 HOH A 20 2020 2020 HOH HOH . U 5 HOH A 21 2021 2021 HOH HOH . U 5 HOH A 22 2022 2022 HOH HOH . U 5 HOH A 23 2023 2023 HOH HOH . U 5 HOH A 24 2024 2024 HOH HOH . U 5 HOH A 25 2025 2025 HOH HOH . U 5 HOH A 26 2026 2026 HOH HOH . U 5 HOH A 27 2027 2027 HOH HOH . U 5 HOH A 28 2028 2028 HOH HOH . U 5 HOH A 29 2029 2029 HOH HOH . U 5 HOH A 30 2030 2030 HOH HOH . U 5 HOH A 31 2031 2031 HOH HOH . U 5 HOH A 32 2032 2032 HOH HOH . U 5 HOH A 33 2033 2033 HOH HOH . U 5 HOH A 34 2034 2034 HOH HOH . U 5 HOH A 35 2035 2035 HOH HOH . U 5 HOH A 36 2036 2036 HOH HOH . U 5 HOH A 37 2037 2037 HOH HOH . U 5 HOH A 38 2038 2038 HOH HOH . U 5 HOH A 39 2039 2039 HOH HOH . U 5 HOH A 40 2040 2040 HOH HOH . U 5 HOH A 41 2041 2041 HOH HOH . U 5 HOH A 42 2042 2042 HOH HOH . U 5 HOH A 43 2043 2043 HOH HOH . U 5 HOH A 44 2044 2044 HOH HOH . U 5 HOH A 45 2045 2045 HOH HOH . U 5 HOH A 46 2046 2046 HOH HOH . U 5 HOH A 47 2047 2047 HOH HOH . U 5 HOH A 48 2048 2048 HOH HOH . U 5 HOH A 49 2049 2049 HOH HOH . U 5 HOH A 50 2050 2050 HOH HOH . U 5 HOH A 51 2051 2051 HOH HOH . U 5 HOH A 52 2052 2052 HOH HOH . U 5 HOH A 53 2053 2053 HOH HOH . U 5 HOH A 54 2054 2054 HOH HOH . U 5 HOH A 55 2055 2055 HOH HOH . V 5 HOH B 1 2001 2001 HOH HOH . V 5 HOH B 2 2002 2002 HOH HOH . V 5 HOH B 3 2003 2003 HOH HOH . V 5 HOH B 4 2004 2004 HOH HOH . V 5 HOH B 5 2005 2005 HOH HOH . V 5 HOH B 6 2006 2006 HOH HOH . V 5 HOH B 7 2007 2007 HOH HOH . V 5 HOH B 8 2008 2008 HOH HOH . V 5 HOH B 9 2009 2009 HOH HOH . V 5 HOH B 10 2010 2010 HOH HOH . V 5 HOH B 11 2011 2011 HOH HOH . V 5 HOH B 12 2012 2012 HOH HOH . V 5 HOH B 13 2013 2013 HOH HOH . V 5 HOH B 14 2014 2014 HOH HOH . V 5 HOH B 15 2015 2015 HOH HOH . V 5 HOH B 16 2016 2016 HOH HOH . V 5 HOH B 17 2017 2017 HOH HOH . V 5 HOH B 18 2018 2018 HOH HOH . V 5 HOH B 19 2019 2019 HOH HOH . V 5 HOH B 20 2020 2020 HOH HOH . V 5 HOH B 21 2021 2021 HOH HOH . V 5 HOH B 22 2022 2022 HOH HOH . V 5 HOH B 23 2023 2023 HOH HOH . V 5 HOH B 24 2024 2024 HOH HOH . V 5 HOH B 25 2025 2025 HOH HOH . V 5 HOH B 26 2026 2026 HOH HOH . V 5 HOH B 27 2027 2027 HOH HOH . V 5 HOH B 28 2028 2028 HOH HOH . V 5 HOH B 29 2029 2029 HOH HOH . V 5 HOH B 30 2030 2030 HOH HOH . V 5 HOH B 31 2031 2031 HOH HOH . V 5 HOH B 32 2032 2032 HOH HOH . V 5 HOH B 33 2033 2033 HOH HOH . V 5 HOH B 34 2034 2034 HOH HOH . V 5 HOH B 35 2035 2035 HOH HOH . V 5 HOH B 36 2036 2036 HOH HOH . V 5 HOH B 37 2037 2037 HOH HOH . V 5 HOH B 38 2038 2038 HOH HOH . V 5 HOH B 39 2039 2039 HOH HOH . V 5 HOH B 40 2040 2040 HOH HOH . V 5 HOH B 41 2041 2041 HOH HOH . V 5 HOH B 42 2042 2042 HOH HOH . V 5 HOH B 43 2043 2043 HOH HOH . V 5 HOH B 44 2044 2044 HOH HOH . V 5 HOH B 45 2045 2045 HOH HOH . V 5 HOH B 46 2046 2046 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . H 4 -1.357 -19.569 -34.04 1 41.87 ? C1 EDO 1201 A 1 HETATM 2 O O1 EDO . . . H 4 -0.256 -19.331 -33.133 1 33.63 ? O1 EDO 1201 A 1 HETATM 3 C C2 EDO . . . H 4 -2.735 -19.22 -33.479 1 48.39 ? C2 EDO 1201 A 1 HETATM 4 O O2 EDO . . . H 4 -3.75 -19.702 -34.395 1 49.86 ? O2 EDO 1201 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #