data_4C5D
#
_model_server_result.job_id            3IrNmqOS_b1GyE6fNXPRXw 
_model_server_result.datetime_utc      '2024-11-22 20:33:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4c5d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":2000}' 
#
_entry.id    4C5D 
#
_exptl.entry_id    4C5D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              615.486 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(R)-3-(4-BROMOBENZYLTHIO)-2-(3-(3-((2,4-DIFLUOROPHENYL)ETHYNYL)BENZOYL)-3-PROPYLUREIDO)PROPANOIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4C5D 
_cell.length_a            64.138 
_cell.length_b            64.138 
_cell.length_c            132.376 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4C5D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 6_554 -x,-x+y,-z-1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -44.125333 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 L N N 
#
_chem_comp.formula           'C29 H25 Br F2 N2 O4 S' 
_chem_comp.formula_weight    615.486 
_chem_comp.id                X0R 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(R)-3-(4-BROMOBENZYLTHIO)-2-(3-(3-((2,4-DIFLUOROPHENYL)ETHYNYL)BENZOYL)-3-PROPYLUREIDO)PROPANOIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
BR C28 X0R sing 389 n n 
C28 C27 X0R sing 390 n y 
C28 C29 X0R doub 391 n y 
C27 C26 X0R doub 392 n y 
C26 C25 X0R sing 393 n y 
C29 C30 X0R sing 394 n y 
C30 C25 X0R doub 395 n y 
C25 C24 X0R sing 396 n n 
C24 S23 X0R sing 397 n n 
S23 C22 X0R sing 398 n n 
C22 C20 X0R sing 399 n n 
C20 C21 X0R sing 400 n n 
C20 N19 X0R sing 401 n n 
C21 O2 X0R doub 402 n n 
C21 O1 X0R sing 403 n n 
N19 C19 X0R sing 404 n n 
C19 O19 X0R doub 405 n n 
C19 N15 X0R sing 406 n n 
N15 C16 X0R sing 407 n n 
N15 C15 X0R sing 408 n n 
C16 C17 X0R sing 409 n n 
C17 C18 X0R sing 410 n n 
C15 O15 X0R doub 411 n n 
C15 C11 X0R sing 412 n n 
C11 C10 X0R sing 413 n y 
C11 C12 X0R doub 414 n y 
C10 C9 X0R doub 415 n y 
C12 C13 X0R sing 416 n y 
C13 C14 X0R doub 417 n y 
C14 C9 X0R sing 418 n y 
C9 C8 X0R sing 419 n n 
C8 C7 X0R trip 420 n n 
C7 C1 X0R sing 421 n n 
C1 C6 X0R sing 422 n y 
C1 C2 X0R doub 423 n y 
C6 C5 X0R doub 424 n y 
C5 C4 X0R sing 425 n y 
C4 F4 X0R sing 426 n n 
C4 C3 X0R doub 427 n y 
C3 C2 X0R sing 428 n y 
C2 F2 X0R sing 429 n n 
C27 H27 X0R sing 430 n n 
C29 H29 X0R sing 431 n n 
C26 H26 X0R sing 432 n n 
C30 H30 X0R sing 433 n n 
C24 H241 X0R sing 434 n n 
C24 H242 X0R sing 435 n n 
C22 H221 X0R sing 436 n n 
C22 H222 X0R sing 437 n n 
C20 H20 X0R sing 438 n n 
N19 H19 X0R sing 439 n n 
O1 H1 X0R sing 440 n n 
C16 H161 X0R sing 441 n n 
C16 H162 X0R sing 442 n n 
C17 H171 X0R sing 443 n n 
C17 H172 X0R sing 444 n n 
C18 H181 X0R sing 445 n n 
C18 H182 X0R sing 446 n n 
C18 H183 X0R sing 447 n n 
C10 H10 X0R sing 448 n n 
C12 H12 X0R sing 449 n n 
C13 H13 X0R sing 450 n n 
C14 H14 X0R sing 451 n n 
C6 H6 X0R sing 452 n n 
C5 H5 X0R sing 453 n n 
C3 H3 X0R sing 454 n n 
#
_atom_sites.entry_id                     4C5D 
_atom_sites.fract_transf_matrix[1][1]    0.015591 
_atom_sites.fract_transf_matrix[1][2]    0.009002 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018003 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007554 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 X0R A 1 2000 2000 X0R X0R . 
D 3 SO4 A 1 1197 1197 SO4 SO4 . 
E 3 SO4 A 1 1198 1198 SO4 SO4 . 
F 3 SO4 A 1 1199 1199 SO4 SO4 . 
G 4 EDO A 1 1200 1200 EDO EDO . 
H 4 EDO A 1 1201 1201 EDO EDO . 
I 4 EDO A 1 1202 1202 EDO EDO . 
J 4 EDO A 1 1203 1203 EDO EDO . 
K 4 EDO A 1 1204 1204 EDO EDO . 
L 2 X0R B 1 2000 2000 X0R X0R . 
M 3 SO4 B 1 1199 1199 SO4 SO4 . 
N 3 SO4 B 1 1200 1200 SO4 SO4 . 
O 3 SO4 B 1 1201 1201 SO4 SO4 . 
P 4 EDO B 1 1202 1202 EDO EDO . 
Q 4 EDO B 1 1203 1203 EDO EDO . 
R 4 EDO B 1 1204 1204 EDO EDO . 
S 4 EDO B 1 1205 1205 EDO EDO . 
T 4 EDO B 1 1206 1206 EDO EDO . 
U 5 HOH A 1 2001 2001 HOH HOH . 
U 5 HOH A 2 2002 2002 HOH HOH . 
U 5 HOH A 3 2003 2003 HOH HOH . 
U 5 HOH A 4 2004 2004 HOH HOH . 
U 5 HOH A 5 2005 2005 HOH HOH . 
U 5 HOH A 6 2006 2006 HOH HOH . 
U 5 HOH A 7 2007 2007 HOH HOH . 
U 5 HOH A 8 2008 2008 HOH HOH . 
U 5 HOH A 9 2009 2009 HOH HOH . 
U 5 HOH A 10 2010 2010 HOH HOH . 
U 5 HOH A 11 2011 2011 HOH HOH . 
U 5 HOH A 12 2012 2012 HOH HOH . 
U 5 HOH A 13 2013 2013 HOH HOH . 
U 5 HOH A 14 2014 2014 HOH HOH . 
U 5 HOH A 15 2015 2015 HOH HOH . 
U 5 HOH A 16 2016 2016 HOH HOH . 
U 5 HOH A 17 2017 2017 HOH HOH . 
U 5 HOH A 18 2018 2018 HOH HOH . 
U 5 HOH A 19 2019 2019 HOH HOH . 
U 5 HOH A 20 2020 2020 HOH HOH . 
U 5 HOH A 21 2021 2021 HOH HOH . 
U 5 HOH A 22 2022 2022 HOH HOH . 
U 5 HOH A 23 2023 2023 HOH HOH . 
U 5 HOH A 24 2024 2024 HOH HOH . 
U 5 HOH A 25 2025 2025 HOH HOH . 
U 5 HOH A 26 2026 2026 HOH HOH . 
U 5 HOH A 27 2027 2027 HOH HOH . 
U 5 HOH A 28 2028 2028 HOH HOH . 
U 5 HOH A 29 2029 2029 HOH HOH . 
U 5 HOH A 30 2030 2030 HOH HOH . 
U 5 HOH A 31 2031 2031 HOH HOH . 
U 5 HOH A 32 2032 2032 HOH HOH . 
U 5 HOH A 33 2033 2033 HOH HOH . 
U 5 HOH A 34 2034 2034 HOH HOH . 
U 5 HOH A 35 2035 2035 HOH HOH . 
U 5 HOH A 36 2036 2036 HOH HOH . 
U 5 HOH A 37 2037 2037 HOH HOH . 
U 5 HOH A 38 2038 2038 HOH HOH . 
U 5 HOH A 39 2039 2039 HOH HOH . 
U 5 HOH A 40 2040 2040 HOH HOH . 
U 5 HOH A 41 2041 2041 HOH HOH . 
U 5 HOH A 42 2042 2042 HOH HOH . 
U 5 HOH A 43 2043 2043 HOH HOH . 
U 5 HOH A 44 2044 2044 HOH HOH . 
U 5 HOH A 45 2045 2045 HOH HOH . 
U 5 HOH A 46 2046 2046 HOH HOH . 
U 5 HOH A 47 2047 2047 HOH HOH . 
U 5 HOH A 48 2048 2048 HOH HOH . 
U 5 HOH A 49 2049 2049 HOH HOH . 
U 5 HOH A 50 2050 2050 HOH HOH . 
U 5 HOH A 51 2051 2051 HOH HOH . 
U 5 HOH A 52 2052 2052 HOH HOH . 
U 5 HOH A 53 2053 2053 HOH HOH . 
U 5 HOH A 54 2054 2054 HOH HOH . 
U 5 HOH A 55 2055 2055 HOH HOH . 
V 5 HOH B 1 2001 2001 HOH HOH . 
V 5 HOH B 2 2002 2002 HOH HOH . 
V 5 HOH B 3 2003 2003 HOH HOH . 
V 5 HOH B 4 2004 2004 HOH HOH . 
V 5 HOH B 5 2005 2005 HOH HOH . 
V 5 HOH B 6 2006 2006 HOH HOH . 
V 5 HOH B 7 2007 2007 HOH HOH . 
V 5 HOH B 8 2008 2008 HOH HOH . 
V 5 HOH B 9 2009 2009 HOH HOH . 
V 5 HOH B 10 2010 2010 HOH HOH . 
V 5 HOH B 11 2011 2011 HOH HOH . 
V 5 HOH B 12 2012 2012 HOH HOH . 
V 5 HOH B 13 2013 2013 HOH HOH . 
V 5 HOH B 14 2014 2014 HOH HOH . 
V 5 HOH B 15 2015 2015 HOH HOH . 
V 5 HOH B 16 2016 2016 HOH HOH . 
V 5 HOH B 17 2017 2017 HOH HOH . 
V 5 HOH B 18 2018 2018 HOH HOH . 
V 5 HOH B 19 2019 2019 HOH HOH . 
V 5 HOH B 20 2020 2020 HOH HOH . 
V 5 HOH B 21 2021 2021 HOH HOH . 
V 5 HOH B 22 2022 2022 HOH HOH . 
V 5 HOH B 23 2023 2023 HOH HOH . 
V 5 HOH B 24 2024 2024 HOH HOH . 
V 5 HOH B 25 2025 2025 HOH HOH . 
V 5 HOH B 26 2026 2026 HOH HOH . 
V 5 HOH B 27 2027 2027 HOH HOH . 
V 5 HOH B 28 2028 2028 HOH HOH . 
V 5 HOH B 29 2029 2029 HOH HOH . 
V 5 HOH B 30 2030 2030 HOH HOH . 
V 5 HOH B 31 2031 2031 HOH HOH . 
V 5 HOH B 32 2032 2032 HOH HOH . 
V 5 HOH B 33 2033 2033 HOH HOH . 
V 5 HOH B 34 2034 2034 HOH HOH . 
V 5 HOH B 35 2035 2035 HOH HOH . 
V 5 HOH B 36 2036 2036 HOH HOH . 
V 5 HOH B 37 2037 2037 HOH HOH . 
V 5 HOH B 38 2038 2038 HOH HOH . 
V 5 HOH B 39 2039 2039 HOH HOH . 
V 5 HOH B 40 2040 2040 HOH HOH . 
V 5 HOH B 41 2041 2041 HOH HOH . 
V 5 HOH B 42 2042 2042 HOH HOH . 
V 5 HOH B 43 2043 2043 HOH HOH . 
V 5 HOH B 44 2044 2044 HOH HOH . 
V 5 HOH B 45 2045 2045 HOH HOH . 
V 5 HOH B 46 2046 2046 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 BR BR X0R . . . C 2 -11.964 -32.131 -14.482 1 56.38 ? BR X0R 2000 A 1 
HETATM 2 C C28 X0R . . . C 2 -13.442 -31.043 -14.913 1 38.04 ? C28 X0R 2000 A 1 
HETATM 3 C C27 X0R . . . C 2 -14.358 -31.509 -15.866 1 33.44 ? C27 X0R 2000 A 1 
HETATM 4 C C26 X0R . . . C 2 -15.442 -30.704 -16.203 1 33.53 ? C26 X0R 2000 A 1 
HETATM 5 C C29 X0R . . . C 2 -13.62 -29.809 -14.27 1 38.59 ? C29 X0R 2000 A 1 
HETATM 6 C C30 X0R . . . C 2 -14.721 -29.012 -14.596 1 38.8 ? C30 X0R 2000 A 1 
HETATM 7 C C25 X0R . . . C 2 -15.622 -29.469 -15.578 1 42.54 ? C25 X0R 2000 A 1 
HETATM 8 C C24 X0R . . . C 2 -16.802 -28.612 -15.974 1 41.9 ? C24 X0R 2000 A 1 
HETATM 9 S S23 X0R . . . C 2 -18.271 -29.54 -15.818 1 68.82 ? S23 X0R 2000 A 1 
HETATM 10 C C22 X0R . . . C 2 -18.324 -29.517 -14.067 1 76.81 ? C22 X0R 2000 A 1 
HETATM 11 C C20 X0R . . . C 2 -19.142 -28.311 -13.642 1 76.3 ? C20 X0R 2000 A 1 
HETATM 12 C C21 X0R . . . C 2 -20.102 -28.871 -12.64 1 79.21 ? C21 X0R 2000 A 1 
HETATM 13 O O2 X0R . . . C 2 -21.33 -28.796 -12.879 1 79.5 ? O2 X0R 2000 A 1 
HETATM 14 O O1 X0R . . . C 2 -19.616 -29.424 -11.625 1 81.43 ? O1 X0R 2000 A 1 
HETATM 15 N N19 X0R . . . C 2 -18.288 -27.225 -13.157 1 70.71 ? N19 X0R 2000 A 1 
HETATM 16 C C19 X0R . . . C 2 -18.54 -25.954 -13.48 1 58.57 ? C19 X0R 2000 A 1 
HETATM 17 O O19 X0R . . . C 2 -19.518 -25.736 -14.175 1 55.45 ? O19 X0R 2000 A 1 
HETATM 18 N N15 X0R . . . C 2 -17.76 -24.946 -13.031 1 47.6 ? N15 X0R 2000 A 1 
HETATM 19 C C16 X0R . . . C 2 -18.333 -23.656 -12.714 1 37.5 ? C16 X0R 2000 A 1 
HETATM 20 C C17 X0R . . . C 2 -18.343 -22.929 -14.04 1 40.53 ? C17 X0R 2000 A 1 
HETATM 21 C C18 X0R . . . C 2 -19.267 -21.732 -13.963 1 47.35 ? C18 X0R 2000 A 1 
HETATM 22 C C15 X0R . . . C 2 -16.52 -25.239 -12.641 1 46.38 ? C15 X0R 2000 A 1 
HETATM 23 O O15 X0R . . . C 2 -16.011 -26.317 -12.892 1 50.79 ? O15 X0R 2000 A 1 
HETATM 24 C C11 X0R . . . C 2 -15.711 -24.242 -11.857 1 40.28 ? C11 X0R 2000 A 1 
HETATM 25 C C10 X0R . . . C 2 -14.787 -23.405 -12.495 1 36.85 ? C10 X0R 2000 A 1 
HETATM 26 C C12 X0R . . . C 2 -15.865 -24.149 -10.472 1 39.14 ? C12 X0R 2000 A 1 
HETATM 27 C C13 X0R . . . C 2 -15.098 -23.22 -9.751 1 37.31 ? C13 X0R 2000 A 1 
HETATM 28 C C14 X0R . . . C 2 -14.177 -22.392 -10.387 1 34.97 ? C14 X0R 2000 A 1 
HETATM 29 C C9 X0R . . . C 2 -14.004 -22.489 -11.771 1 37.14 ? C9 X0R 2000 A 1 
HETATM 30 C C8 X0R . . . C 2 -13.165 -21.719 -12.4 1 31.11 ? C8 X0R 2000 A 1 
HETATM 31 C C7 X0R . . . C 2 -12.391 -21.011 -12.978 1 28.46 ? C7 X0R 2000 A 1 
HETATM 32 C C1 X0R . . . C 2 -11.568 -20.255 -13.648 1 24.69 ? C1 X0R 2000 A 1 
HETATM 33 C C6 X0R . . . C 2 -11.657 -18.866 -13.597 1 24.23 ? C6 X0R 2000 A 1 
HETATM 34 C C5 X0R . . . C 2 -10.717 -18.096 -14.294 1 27.72 ? C5 X0R 2000 A 1 
HETATM 35 C C4 X0R . . . C 2 -9.688 -18.677 -15.052 1 24.74 ? C4 X0R 2000 A 1 
HETATM 36 F F4 X0R . . . C 2 -8.764 -17.95 -15.755 1 28.67 ? F4 X0R 2000 A 1 
HETATM 37 C C3 X0R . . . C 2 -9.603 -20.049 -15.073 1 23.14 ? C3 X0R 2000 A 1 
HETATM 38 C C2 X0R . . . C 2 -10.517 -20.823 -14.368 1 30.41 ? C2 X0R 2000 A 1 
HETATM 39 F F2 X0R . . . C 2 -10.357 -22.162 -14.406 1 43.16 ? F2 X0R 2000 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           39 
#