data_4C5D # _model_server_result.job_id FPNK3H1fhVyDoxCP6BJyHA _model_server_result.datetime_utc '2024-11-22 20:22:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4c5d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":2000}' # _entry.id 4C5D # _exptl.entry_id 4C5D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 615.486 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(R)-3-(4-BROMOBENZYLTHIO)-2-(3-(3-((2,4-DIFLUOROPHENYL)ETHYNYL)BENZOYL)-3-PROPYLUREIDO)PROPANOIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4C5D _cell.length_a 64.138 _cell.length_b 64.138 _cell.length_c 132.376 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4C5D _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_554 -x,-x+y,-z-1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -44.125333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 L N N # _chem_comp.formula 'C29 H25 Br F2 N2 O4 S' _chem_comp.formula_weight 615.486 _chem_comp.id X0R _chem_comp.mon_nstd_flag . _chem_comp.name '(R)-3-(4-BROMOBENZYLTHIO)-2-(3-(3-((2,4-DIFLUOROPHENYL)ETHYNYL)BENZOYL)-3-PROPYLUREIDO)PROPANOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag BR C28 X0R sing 389 n n C28 C27 X0R sing 390 n y C28 C29 X0R doub 391 n y C27 C26 X0R doub 392 n y C26 C25 X0R sing 393 n y C29 C30 X0R sing 394 n y C30 C25 X0R doub 395 n y C25 C24 X0R sing 396 n n C24 S23 X0R sing 397 n n S23 C22 X0R sing 398 n n C22 C20 X0R sing 399 n n C20 C21 X0R sing 400 n n C20 N19 X0R sing 401 n n C21 O2 X0R doub 402 n n C21 O1 X0R sing 403 n n N19 C19 X0R sing 404 n n C19 O19 X0R doub 405 n n C19 N15 X0R sing 406 n n N15 C16 X0R sing 407 n n N15 C15 X0R sing 408 n n C16 C17 X0R sing 409 n n C17 C18 X0R sing 410 n n C15 O15 X0R doub 411 n n C15 C11 X0R sing 412 n n C11 C10 X0R sing 413 n y C11 C12 X0R doub 414 n y C10 C9 X0R doub 415 n y C12 C13 X0R sing 416 n y C13 C14 X0R doub 417 n y C14 C9 X0R sing 418 n y C9 C8 X0R sing 419 n n C8 C7 X0R trip 420 n n C7 C1 X0R sing 421 n n C1 C6 X0R sing 422 n y C1 C2 X0R doub 423 n y C6 C5 X0R doub 424 n y C5 C4 X0R sing 425 n y C4 F4 X0R sing 426 n n C4 C3 X0R doub 427 n y C3 C2 X0R sing 428 n y C2 F2 X0R sing 429 n n C27 H27 X0R sing 430 n n C29 H29 X0R sing 431 n n C26 H26 X0R sing 432 n n C30 H30 X0R sing 433 n n C24 H241 X0R sing 434 n n C24 H242 X0R sing 435 n n C22 H221 X0R sing 436 n n C22 H222 X0R sing 437 n n C20 H20 X0R sing 438 n n N19 H19 X0R sing 439 n n O1 H1 X0R sing 440 n n C16 H161 X0R sing 441 n n C16 H162 X0R sing 442 n n C17 H171 X0R sing 443 n n C17 H172 X0R sing 444 n n C18 H181 X0R sing 445 n n C18 H182 X0R sing 446 n n C18 H183 X0R sing 447 n n C10 H10 X0R sing 448 n n C12 H12 X0R sing 449 n n C13 H13 X0R sing 450 n n C14 H14 X0R sing 451 n n C6 H6 X0R sing 452 n n C5 H5 X0R sing 453 n n C3 H3 X0R sing 454 n n # _atom_sites.entry_id 4C5D _atom_sites.fract_transf_matrix[1][1] 0.015591 _atom_sites.fract_transf_matrix[1][2] 0.009002 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018003 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007554 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 X0R A 1 2000 2000 X0R X0R . D 3 SO4 A 1 1197 1197 SO4 SO4 . E 3 SO4 A 1 1198 1198 SO4 SO4 . F 3 SO4 A 1 1199 1199 SO4 SO4 . G 4 EDO A 1 1200 1200 EDO EDO . H 4 EDO A 1 1201 1201 EDO EDO . I 4 EDO A 1 1202 1202 EDO EDO . J 4 EDO A 1 1203 1203 EDO EDO . K 4 EDO A 1 1204 1204 EDO EDO . L 2 X0R B 1 2000 2000 X0R X0R . M 3 SO4 B 1 1199 1199 SO4 SO4 . N 3 SO4 B 1 1200 1200 SO4 SO4 . O 3 SO4 B 1 1201 1201 SO4 SO4 . P 4 EDO B 1 1202 1202 EDO EDO . Q 4 EDO B 1 1203 1203 EDO EDO . R 4 EDO B 1 1204 1204 EDO EDO . S 4 EDO B 1 1205 1205 EDO EDO . T 4 EDO B 1 1206 1206 EDO EDO . U 5 HOH A 1 2001 2001 HOH HOH . U 5 HOH A 2 2002 2002 HOH HOH . U 5 HOH A 3 2003 2003 HOH HOH . U 5 HOH A 4 2004 2004 HOH HOH . U 5 HOH A 5 2005 2005 HOH HOH . U 5 HOH A 6 2006 2006 HOH HOH . U 5 HOH A 7 2007 2007 HOH HOH . U 5 HOH A 8 2008 2008 HOH HOH . U 5 HOH A 9 2009 2009 HOH HOH . U 5 HOH A 10 2010 2010 HOH HOH . U 5 HOH A 11 2011 2011 HOH HOH . U 5 HOH A 12 2012 2012 HOH HOH . U 5 HOH A 13 2013 2013 HOH HOH . U 5 HOH A 14 2014 2014 HOH HOH . U 5 HOH A 15 2015 2015 HOH HOH . U 5 HOH A 16 2016 2016 HOH HOH . U 5 HOH A 17 2017 2017 HOH HOH . U 5 HOH A 18 2018 2018 HOH HOH . U 5 HOH A 19 2019 2019 HOH HOH . U 5 HOH A 20 2020 2020 HOH HOH . U 5 HOH A 21 2021 2021 HOH HOH . U 5 HOH A 22 2022 2022 HOH HOH . U 5 HOH A 23 2023 2023 HOH HOH . U 5 HOH A 24 2024 2024 HOH HOH . U 5 HOH A 25 2025 2025 HOH HOH . U 5 HOH A 26 2026 2026 HOH HOH . U 5 HOH A 27 2027 2027 HOH HOH . U 5 HOH A 28 2028 2028 HOH HOH . U 5 HOH A 29 2029 2029 HOH HOH . U 5 HOH A 30 2030 2030 HOH HOH . U 5 HOH A 31 2031 2031 HOH HOH . U 5 HOH A 32 2032 2032 HOH HOH . U 5 HOH A 33 2033 2033 HOH HOH . U 5 HOH A 34 2034 2034 HOH HOH . U 5 HOH A 35 2035 2035 HOH HOH . U 5 HOH A 36 2036 2036 HOH HOH . U 5 HOH A 37 2037 2037 HOH HOH . U 5 HOH A 38 2038 2038 HOH HOH . U 5 HOH A 39 2039 2039 HOH HOH . U 5 HOH A 40 2040 2040 HOH HOH . U 5 HOH A 41 2041 2041 HOH HOH . U 5 HOH A 42 2042 2042 HOH HOH . U 5 HOH A 43 2043 2043 HOH HOH . U 5 HOH A 44 2044 2044 HOH HOH . U 5 HOH A 45 2045 2045 HOH HOH . U 5 HOH A 46 2046 2046 HOH HOH . U 5 HOH A 47 2047 2047 HOH HOH . U 5 HOH A 48 2048 2048 HOH HOH . U 5 HOH A 49 2049 2049 HOH HOH . U 5 HOH A 50 2050 2050 HOH HOH . U 5 HOH A 51 2051 2051 HOH HOH . U 5 HOH A 52 2052 2052 HOH HOH . U 5 HOH A 53 2053 2053 HOH HOH . U 5 HOH A 54 2054 2054 HOH HOH . U 5 HOH A 55 2055 2055 HOH HOH . V 5 HOH B 1 2001 2001 HOH HOH . V 5 HOH B 2 2002 2002 HOH HOH . V 5 HOH B 3 2003 2003 HOH HOH . V 5 HOH B 4 2004 2004 HOH HOH . V 5 HOH B 5 2005 2005 HOH HOH . V 5 HOH B 6 2006 2006 HOH HOH . V 5 HOH B 7 2007 2007 HOH HOH . V 5 HOH B 8 2008 2008 HOH HOH . V 5 HOH B 9 2009 2009 HOH HOH . V 5 HOH B 10 2010 2010 HOH HOH . V 5 HOH B 11 2011 2011 HOH HOH . V 5 HOH B 12 2012 2012 HOH HOH . V 5 HOH B 13 2013 2013 HOH HOH . V 5 HOH B 14 2014 2014 HOH HOH . V 5 HOH B 15 2015 2015 HOH HOH . V 5 HOH B 16 2016 2016 HOH HOH . V 5 HOH B 17 2017 2017 HOH HOH . V 5 HOH B 18 2018 2018 HOH HOH . V 5 HOH B 19 2019 2019 HOH HOH . V 5 HOH B 20 2020 2020 HOH HOH . V 5 HOH B 21 2021 2021 HOH HOH . V 5 HOH B 22 2022 2022 HOH HOH . V 5 HOH B 23 2023 2023 HOH HOH . V 5 HOH B 24 2024 2024 HOH HOH . V 5 HOH B 25 2025 2025 HOH HOH . V 5 HOH B 26 2026 2026 HOH HOH . V 5 HOH B 27 2027 2027 HOH HOH . V 5 HOH B 28 2028 2028 HOH HOH . V 5 HOH B 29 2029 2029 HOH HOH . V 5 HOH B 30 2030 2030 HOH HOH . V 5 HOH B 31 2031 2031 HOH HOH . V 5 HOH B 32 2032 2032 HOH HOH . V 5 HOH B 33 2033 2033 HOH HOH . V 5 HOH B 34 2034 2034 HOH HOH . V 5 HOH B 35 2035 2035 HOH HOH . V 5 HOH B 36 2036 2036 HOH HOH . V 5 HOH B 37 2037 2037 HOH HOH . V 5 HOH B 38 2038 2038 HOH HOH . V 5 HOH B 39 2039 2039 HOH HOH . V 5 HOH B 40 2040 2040 HOH HOH . V 5 HOH B 41 2041 2041 HOH HOH . V 5 HOH B 42 2042 2042 HOH HOH . V 5 HOH B 43 2043 2043 HOH HOH . V 5 HOH B 44 2044 2044 HOH HOH . V 5 HOH B 45 2045 2045 HOH HOH . V 5 HOH B 46 2046 2046 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 BR BR X0R . . . L 2 1.453 -18.784 -56.49 1 59.59 ? BR X0R 2000 B 1 HETATM 2 C C28 X0R . . . L 2 1.83 -20.655 -56.66 1 34.68 ? C28 X0R 2000 B 1 HETATM 3 C C27 X0R . . . L 2 3.152 -21.115 -56.801 1 29.58 ? C27 X0R 2000 B 1 HETATM 4 C C26 X0R . . . L 2 3.432 -22.468 -56.91 1 27.46 ? C26 X0R 2000 B 1 HETATM 5 C C29 X0R . . . L 2 0.787 -21.585 -56.673 1 30.41 ? C29 X0R 2000 B 1 HETATM 6 C C30 X0R . . . L 2 1.075 -22.941 -56.798 1 34.3 ? C30 X0R 2000 B 1 HETATM 7 C C25 X0R . . . L 2 2.392 -23.396 -56.914 1 33.2 ? C25 X0R 2000 B 1 HETATM 8 C C24 X0R . . . L 2 2.685 -24.889 -57.023 1 32.29 ? C24 X0R 2000 B 1 HETATM 9 S S23 X0R . . . L 2 2.193 -25.598 -58.557 1 59.74 ? S23 X0R 2000 B 1 HETATM 10 C C22 X0R . . . L 2 3.557 -25.111 -59.561 1 49.84 ? C22 X0R 2000 B 1 HETATM 11 C C20 X0R . . . L 2 4.675 -26.131 -59.401 1 50.27 ? C20 X0R 2000 B 1 HETATM 12 C C21 X0R . . . L 2 5.024 -26.57 -60.778 1 53.41 ? C21 X0R 2000 B 1 HETATM 13 O O2 X0R . . . L 2 5.922 -25.947 -61.376 1 51.17 ? O2 X0R 2000 B 1 HETATM 14 O O1 X0R . . . L 2 4.401 -27.543 -61.256 1 60.74 ? O1 X0R 2000 B 1 HETATM 15 N N19 X0R . . . L 2 5.829 -25.583 -58.691 1 51.75 ? N19 X0R 2000 B 1 HETATM 16 C C19 X0R . . . L 2 6.716 -26.378 -58.08 1 44.62 ? C19 X0R 2000 B 1 HETATM 17 O O19 X0R . . . L 2 6.547 -27.586 -58.128 1 38.01 ? O19 X0R 2000 B 1 HETATM 18 N N15 X0R . . . L 2 7.777 -25.854 -57.426 1 37.5 ? N15 X0R 2000 B 1 HETATM 19 C C16 X0R . . . L 2 8.804 -26.742 -56.898 1 31.19 ? C16 X0R 2000 B 1 HETATM 20 C C17 X0R . . . L 2 9.725 -27.065 -58.053 1 29.06 ? C17 X0R 2000 B 1 HETATM 21 C C18 X0R . . . L 2 10.604 -28.234 -57.668 1 27.89 ? C18 X0R 2000 B 1 HETATM 22 C C15 X0R . . . L 2 7.904 -24.518 -57.423 1 28.98 ? C15 X0R 2000 B 1 HETATM 23 O O15 X0R . . . L 2 7.037 -23.794 -57.868 1 33.93 ? O15 X0R 2000 B 1 HETATM 24 C C11 X0R . . . L 2 9.147 -23.85 -56.936 1 27.17 ? C11 X0R 2000 B 1 HETATM 25 C C10 X0R . . . L 2 9.447 -23.718 -55.577 1 28.83 ? C10 X0R 2000 B 1 HETATM 26 C C12 X0R . . . L 2 10.017 -23.346 -57.892 1 27.79 ? C12 X0R 2000 B 1 HETATM 27 C C13 X0R . . . L 2 11.192 -22.722 -57.498 1 29.19 ? C13 X0R 2000 B 1 HETATM 28 C C14 X0R . . . L 2 11.498 -22.578 -56.144 1 27.72 ? C14 X0R 2000 B 1 HETATM 29 C C9 X0R . . . L 2 10.632 -23.079 -55.17 1 32.21 ? C9 X0R 2000 B 1 HETATM 30 C C8 X0R . . . L 2 10.96 -22.943 -53.911 1 28.05 ? C8 X0R 2000 B 1 HETATM 31 C C7 X0R . . . L 2 11.208 -22.839 -52.75 1 23.63 ? C7 X0R 2000 B 1 HETATM 32 C C1 X0R . . . L 2 11.486 -22.708 -51.475 1 29.76 ? C1 X0R 2000 B 1 HETATM 33 C C6 X0R . . . L 2 12.544 -23.432 -50.919 1 25.44 ? C6 X0R 2000 B 1 HETATM 34 C C5 X0R . . . L 2 12.84 -23.281 -49.565 1 25.75 ? C5 X0R 2000 B 1 HETATM 35 C C4 X0R . . . L 2 12.105 -22.431 -48.751 1 24.03 ? C4 X0R 2000 B 1 HETATM 36 F F4 X0R . . . L 2 12.383 -22.287 -47.433 1 22.91 ? F4 X0R 2000 B 1 HETATM 37 C C3 X0R . . . L 2 11.07 -21.72 -49.3 1 25.08 ? C3 X0R 2000 B 1 HETATM 38 C C2 X0R . . . L 2 10.763 -21.857 -50.637 1 29.97 ? C2 X0R 2000 B 1 HETATM 39 F F2 X0R . . . L 2 9.745 -21.114 -51.094 1 38.04 ? F2 X0R 2000 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 39 #