data_4C69
#
_model_server_result.job_id            -meFk2lQVZ0_d0dC0SPVEA 
_model_server_result.datetime_utc      '2024-11-22 09:05:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4c69 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1285}' 
#
_entry.id    4C69 
#
_exptl.entry_id    4C69 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              677.933 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          99.25 
_cell.angle_gamma         90 
_cell.entry_id            4C69 
_cell.length_a            100.152 
_cell.length_b            58.369 
_cell.length_c            66.545 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4C69 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 F N N 
#
_chem_comp.formula           'C36 H72 N O8 P' 
_chem_comp.formula_weight    677.933 
_chem_comp.id                MC3 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MC3 sing 313 n n 
C1 O3P MC3 sing 314 n n 
C1 H11 MC3 sing 315 n n 
C1 H12 MC3 sing 316 n n 
C2 C3 MC3 sing 317 n n 
C2 O2 MC3 sing 318 n n 
C2 H2 MC3 sing 319 n n 
C3 O3 MC3 sing 320 n n 
C3 H31 MC3 sing 321 n n 
C3 H32 MC3 sing 322 n n 
C4 C5 MC3 sing 323 n n 
C4 O4P MC3 sing 324 n n 
C4 H41 MC3 sing 325 n n 
C4 H42 MC3 sing 326 n n 
C5 N MC3 sing 327 n n 
C5 H51 MC3 sing 328 n n 
C5 H52 MC3 sing 329 n n 
C6 N MC3 sing 330 n n 
C6 H61 MC3 sing 331 n n 
C6 H62 MC3 sing 332 n n 
C6 H63 MC3 sing 333 n n 
C7 N MC3 sing 334 n n 
C7 H71 MC3 sing 335 n n 
C7 H72 MC3 sing 336 n n 
C7 H73 MC3 sing 337 n n 
C8 N MC3 sing 338 n n 
C8 H81 MC3 sing 339 n n 
C8 H82 MC3 sing 340 n n 
C8 H83 MC3 sing 341 n n 
C11 C12 MC3 sing 342 n n 
C11 O3 MC3 sing 343 n n 
C11 O11 MC3 doub 344 n n 
C12 C13 MC3 sing 345 n n 
C12 H121 MC3 sing 346 n n 
C12 H122 MC3 sing 347 n n 
C13 C14 MC3 sing 348 n n 
C13 H131 MC3 sing 349 n n 
C13 H132 MC3 sing 350 n n 
C14 C15 MC3 sing 351 n n 
C14 H141 MC3 sing 352 n n 
C14 H142 MC3 sing 353 n n 
C15 C16 MC3 sing 354 n n 
C15 H151 MC3 sing 355 n n 
C15 H152 MC3 sing 356 n n 
C16 C17 MC3 sing 357 n n 
C16 H161 MC3 sing 358 n n 
C16 H162 MC3 sing 359 n n 
C17 C18 MC3 sing 360 n n 
C17 H171 MC3 sing 361 n n 
C17 H172 MC3 sing 362 n n 
C18 C19 MC3 sing 363 n n 
C18 H181 MC3 sing 364 n n 
C18 H182 MC3 sing 365 n n 
C19 C20 MC3 sing 366 n n 
C19 H191 MC3 sing 367 n n 
C19 H192 MC3 sing 368 n n 
C20 C21 MC3 sing 369 n n 
C20 H201 MC3 sing 370 n n 
C20 H202 MC3 sing 371 n n 
C21 C22 MC3 sing 372 n n 
C21 H211 MC3 sing 373 n n 
C21 H212 MC3 sing 374 n n 
C22 C23 MC3 sing 375 n n 
C22 H221 MC3 sing 376 n n 
C22 H222 MC3 sing 377 n n 
C23 C24 MC3 sing 378 n n 
C23 H231 MC3 sing 379 n n 
C23 H232 MC3 sing 380 n n 
C24 H241 MC3 sing 381 n n 
C24 H242 MC3 sing 382 n n 
C24 H243 MC3 sing 383 n n 
C31 C32 MC3 sing 384 n n 
C31 O2 MC3 sing 385 n n 
C31 O31 MC3 doub 386 n n 
C32 C33 MC3 sing 387 n n 
C32 H321 MC3 sing 388 n n 
C32 H322 MC3 sing 389 n n 
C33 C34 MC3 sing 390 n n 
C33 H331 MC3 sing 391 n n 
C33 H332 MC3 sing 392 n n 
C34 C35 MC3 sing 393 n n 
C34 H341 MC3 sing 394 n n 
C34 H342 MC3 sing 395 n n 
C35 C36 MC3 sing 396 n n 
C35 H351 MC3 sing 397 n n 
C35 H352 MC3 sing 398 n n 
C36 C37 MC3 sing 399 n n 
C36 H361 MC3 sing 400 n n 
C36 H362 MC3 sing 401 n n 
C37 C38 MC3 sing 402 n n 
C37 H371 MC3 sing 403 n n 
C37 H372 MC3 sing 404 n n 
C38 C39 MC3 sing 405 n n 
C38 H381 MC3 sing 406 n n 
C38 H382 MC3 sing 407 n n 
C39 C40 MC3 sing 408 n n 
C39 H391 MC3 sing 409 n n 
C39 H392 MC3 sing 410 n n 
C40 C41 MC3 sing 411 n n 
C40 H401 MC3 sing 412 n n 
C40 H402 MC3 sing 413 n n 
C41 C42 MC3 sing 414 n n 
C41 H411 MC3 sing 415 n n 
C41 H412 MC3 sing 416 n n 
C42 C43 MC3 sing 417 n n 
C42 H421 MC3 sing 418 n n 
C42 H422 MC3 sing 419 n n 
C43 C44 MC3 sing 420 n n 
C43 H431 MC3 sing 421 n n 
C43 H432 MC3 sing 422 n n 
C44 H441 MC3 sing 423 n n 
C44 H442 MC3 sing 424 n n 
C44 H443 MC3 sing 425 n n 
O1P P MC3 doub 426 n n 
O2P P MC3 sing 427 n n 
O3P P MC3 sing 428 n n 
O4P P MC3 sing 429 n n 
#
_atom_sites.entry_id                     4C69 
_atom_sites.fract_transf_matrix[1][1]    0.009985 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001626 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017132 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015225 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 LDA X 1 1284 1284 LDA LDA . 
C 3 MC3 X 1 1285 1285 MC3 MC3 . 
D 2 LDA X 1 1286 1286 LDA LDA . 
E 4 ATP X 1 1287 1287 ATP ATP . 
F 3 MC3 X 1 1288 1288 MC3 MC3 . 
G 2 LDA X 1 1289 1289 LDA LDA . 
H 2 LDA X 1 1290 1290 LDA LDA . 
I 2 LDA X 1 1291 1291 LDA LDA . 
J 2 LDA X 1 1292 1292 LDA LDA . 
K 5 HOH X 1 2001 2001 HOH HOH . 
K 5 HOH X 2 2002 2002 HOH HOH . 
K 5 HOH X 3 2003 2003 HOH HOH . 
K 5 HOH X 4 2004 2004 HOH HOH . 
K 5 HOH X 5 2005 2005 HOH HOH . 
K 5 HOH X 6 2006 2006 HOH HOH . 
K 5 HOH X 7 2007 2007 HOH HOH . 
K 5 HOH X 8 2008 2008 HOH HOH . 
K 5 HOH X 9 2009 2009 HOH HOH . 
K 5 HOH X 10 2010 2010 HOH HOH . 
K 5 HOH X 11 2011 2011 HOH HOH . 
K 5 HOH X 12 2012 2012 HOH HOH . 
K 5 HOH X 13 2013 2013 HOH HOH . 
K 5 HOH X 14 2014 2014 HOH HOH . 
K 5 HOH X 15 2015 2015 HOH HOH . 
K 5 HOH X 16 2016 2016 HOH HOH . 
K 5 HOH X 17 2017 2017 HOH HOH . 
K 5 HOH X 18 2018 2018 HOH HOH . 
K 5 HOH X 19 2019 2019 HOH HOH . 
K 5 HOH X 20 2020 2020 HOH HOH . 
K 5 HOH X 21 2021 2021 HOH HOH . 
K 5 HOH X 22 2022 2022 HOH HOH . 
K 5 HOH X 23 2023 2023 HOH HOH . 
K 5 HOH X 24 2024 2024 HOH HOH . 
K 5 HOH X 25 2025 2025 HOH HOH . 
K 5 HOH X 26 2026 2026 HOH HOH . 
K 5 HOH X 27 2027 2027 HOH HOH . 
K 5 HOH X 28 2028 2028 HOH HOH . 
K 5 HOH X 29 2029 2029 HOH HOH . 
K 5 HOH X 30 2030 2030 HOH HOH . 
K 5 HOH X 31 2031 2031 HOH HOH . 
K 5 HOH X 32 2032 2032 HOH HOH . 
K 5 HOH X 33 2033 2033 HOH HOH . 
K 5 HOH X 34 2034 2034 HOH HOH . 
K 5 HOH X 35 2035 2035 HOH HOH . 
K 5 HOH X 36 2036 2036 HOH HOH . 
K 5 HOH X 37 2037 2037 HOH HOH . 
K 5 HOH X 38 2038 2038 HOH HOH . 
K 5 HOH X 39 2039 2039 HOH HOH . 
K 5 HOH X 40 2040 2040 HOH HOH . 
K 5 HOH X 41 2041 2041 HOH HOH . 
K 5 HOH X 42 2042 2042 HOH HOH . 
K 5 HOH X 43 2043 2043 HOH HOH . 
K 5 HOH X 44 2044 2044 HOH HOH . 
K 5 HOH X 45 2045 2045 HOH HOH . 
K 5 HOH X 46 2046 2046 HOH HOH . 
K 5 HOH X 47 2047 2047 HOH HOH . 
K 5 HOH X 48 2048 2048 HOH HOH . 
K 5 HOH X 49 2049 2049 HOH HOH . 
K 5 HOH X 50 2050 2050 HOH HOH . 
K 5 HOH X 51 2051 2051 HOH HOH . 
K 5 HOH X 52 2052 2052 HOH HOH . 
K 5 HOH X 53 2053 2053 HOH HOH . 
K 5 HOH X 54 2054 2054 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MC3 . . . C 3 13.585 37.932 43.015 1 95.74 ? C1 MC3 1285 X 1 
HETATM 2 C C2 MC3 . . . C 3 14.896 37.889 42.182 1 113.51 ? C2 MC3 1285 X 1 
HETATM 3 C C3 MC3 . . . C 3 14.778 36.815 41.163 1 113.67 ? C3 MC3 1285 X 1 
HETATM 4 C C4 MC3 . . . C 3 11.042 34.979 46.526 1 137.68 ? C4 MC3 1285 X 1 
HETATM 5 C C5 MC3 . . . C 3 9.551 34.723 46.284 1 136.06 ? C5 MC3 1285 X 1 
HETATM 6 C C6 MC3 . . . C 3 8.746 35.306 48.492 1 137.11 ? C6 MC3 1285 X 1 
HETATM 7 C C7 MC3 . . . C 3 7.226 34.978 46.701 1 135.86 ? C7 MC3 1285 X 1 
HETATM 8 C C8 MC3 . . . C 3 8.609 36.935 46.695 1 130.54 ? C8 MC3 1285 X 1 
HETATM 9 C C31 MC3 . . . C 3 16.155 39.233 40.56 1 125.95 ? C31 MC3 1285 X 1 
HETATM 10 C C32 MC3 . . . C 3 17.429 40.021 40.775 1 131.82 ? C32 MC3 1285 X 1 
HETATM 11 C C33 MC3 . . . C 3 18.056 40.673 39.552 1 131.74 ? C33 MC3 1285 X 1 
HETATM 12 C C34 MC3 . . . C 3 19.495 40.357 39.235 1 130.24 ? C34 MC3 1285 X 1 
HETATM 13 C C35 MC3 . . . C 3 20.291 41.371 38.412 1 125.87 ? C35 MC3 1285 X 1 
HETATM 14 C C36 MC3 . . . C 3 21.807 41.247 38.46 1 121.71 ? C36 MC3 1285 X 1 
HETATM 15 C C37 MC3 . . . C 3 22.642 42.346 37.834 1 118.39 ? C37 MC3 1285 X 1 
HETATM 16 N N MC3 . . . C 3 8.538 35.479 47.049 1 134.74 ? N MC3 1285 X 1 
HETATM 17 O O2 MC3 . . . C 3 15.214 39.139 41.603 1 118.19 ? O2 MC3 1285 X 1 
HETATM 18 O O31 MC3 . . . C 3 15.801 39.057 39.406 1 128.17 ? O31 MC3 1285 X 1 
HETATM 19 O O1P MC3 . . . C 3 11.435 37.62 45.152 1 194.27 ? O1P MC3 1285 X 1 
HETATM 20 O O2P MC3 . . . C 3 13.785 36.696 46.005 1 130.12 ? O2P MC3 1285 X 1 
HETATM 21 O O3P MC3 . . . C 3 13.109 36.701 43.54 1 97.57 ? O3P MC3 1285 X 1 
HETATM 22 O O4P MC3 . . . C 3 11.879 35.164 45.361 1 138.84 ? O4P MC3 1285 X 1 
HETATM 23 P P MC3 . . . C 3 12.549 36.585 45.048 1 193.45 ? P MC3 1285 X 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           23 
#