data_4C69 # _model_server_result.job_id PZFPhK9nhyBShfbHvm1vUQ _model_server_result.datetime_utc '2024-11-22 09:07:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4c69 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1287}' # _entry.id 4C69 # _exptl.entry_id 4C69 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.25 _cell.angle_gamma 90 _cell.entry_id 4C69 _cell.length_a 100.152 _cell.length_b 58.369 _cell.length_c 66.545 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4C69 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 4C69 _atom_sites.fract_transf_matrix[1][1] 0.009985 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001626 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017132 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015225 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LDA X 1 1284 1284 LDA LDA . C 3 MC3 X 1 1285 1285 MC3 MC3 . D 2 LDA X 1 1286 1286 LDA LDA . E 4 ATP X 1 1287 1287 ATP ATP . F 3 MC3 X 1 1288 1288 MC3 MC3 . G 2 LDA X 1 1289 1289 LDA LDA . H 2 LDA X 1 1290 1290 LDA LDA . I 2 LDA X 1 1291 1291 LDA LDA . J 2 LDA X 1 1292 1292 LDA LDA . K 5 HOH X 1 2001 2001 HOH HOH . K 5 HOH X 2 2002 2002 HOH HOH . K 5 HOH X 3 2003 2003 HOH HOH . K 5 HOH X 4 2004 2004 HOH HOH . K 5 HOH X 5 2005 2005 HOH HOH . K 5 HOH X 6 2006 2006 HOH HOH . K 5 HOH X 7 2007 2007 HOH HOH . K 5 HOH X 8 2008 2008 HOH HOH . K 5 HOH X 9 2009 2009 HOH HOH . K 5 HOH X 10 2010 2010 HOH HOH . K 5 HOH X 11 2011 2011 HOH HOH . K 5 HOH X 12 2012 2012 HOH HOH . K 5 HOH X 13 2013 2013 HOH HOH . K 5 HOH X 14 2014 2014 HOH HOH . K 5 HOH X 15 2015 2015 HOH HOH . K 5 HOH X 16 2016 2016 HOH HOH . K 5 HOH X 17 2017 2017 HOH HOH . K 5 HOH X 18 2018 2018 HOH HOH . K 5 HOH X 19 2019 2019 HOH HOH . K 5 HOH X 20 2020 2020 HOH HOH . K 5 HOH X 21 2021 2021 HOH HOH . K 5 HOH X 22 2022 2022 HOH HOH . K 5 HOH X 23 2023 2023 HOH HOH . K 5 HOH X 24 2024 2024 HOH HOH . K 5 HOH X 25 2025 2025 HOH HOH . K 5 HOH X 26 2026 2026 HOH HOH . K 5 HOH X 27 2027 2027 HOH HOH . K 5 HOH X 28 2028 2028 HOH HOH . K 5 HOH X 29 2029 2029 HOH HOH . K 5 HOH X 30 2030 2030 HOH HOH . K 5 HOH X 31 2031 2031 HOH HOH . K 5 HOH X 32 2032 2032 HOH HOH . K 5 HOH X 33 2033 2033 HOH HOH . K 5 HOH X 34 2034 2034 HOH HOH . K 5 HOH X 35 2035 2035 HOH HOH . K 5 HOH X 36 2036 2036 HOH HOH . K 5 HOH X 37 2037 2037 HOH HOH . K 5 HOH X 38 2038 2038 HOH HOH . K 5 HOH X 39 2039 2039 HOH HOH . K 5 HOH X 40 2040 2040 HOH HOH . K 5 HOH X 41 2041 2041 HOH HOH . K 5 HOH X 42 2042 2042 HOH HOH . K 5 HOH X 43 2043 2043 HOH HOH . K 5 HOH X 44 2044 2044 HOH HOH . K 5 HOH X 45 2045 2045 HOH HOH . K 5 HOH X 46 2046 2046 HOH HOH . K 5 HOH X 47 2047 2047 HOH HOH . K 5 HOH X 48 2048 2048 HOH HOH . K 5 HOH X 49 2049 2049 HOH HOH . K 5 HOH X 50 2050 2050 HOH HOH . K 5 HOH X 51 2051 2051 HOH HOH . K 5 HOH X 52 2052 2052 HOH HOH . K 5 HOH X 53 2053 2053 HOH HOH . K 5 HOH X 54 2054 2054 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . E 4 6.276 31.364 18.635 1 202.81 ? PG ATP 1287 X 1 HETATM 2 O O1G ATP . . . E 4 5.797 32.318 17.527 1 203.28 -1 O1G ATP 1287 X 1 HETATM 3 O O2G ATP . . . E 4 6.264 32.099 19.976 1 203.67 -1 O2G ATP 1287 X 1 HETATM 4 O O3G ATP . . . E 4 5.346 30.177 18.721 1 201.88 ? O3G ATP 1287 X 1 HETATM 5 P PB ATP . . . E 4 8.068 30.363 16.834 1 255.44 ? PB ATP 1287 X 1 HETATM 6 O O1B ATP . . . E 4 9.127 29.348 16.869 1 255.08 -1 O1B ATP 1287 X 1 HETATM 7 O O2B ATP . . . E 4 8.513 31.501 16.009 1 254.74 ? O2B ATP 1287 X 1 HETATM 8 O O3B ATP . . . E 4 7.75 30.866 18.294 1 264.21 ? O3B ATP 1287 X 1 HETATM 9 P PA ATP . . . E 4 6.39 29.948 14.585 1 222.98 ? PA ATP 1287 X 1 HETATM 10 O O1A ATP . . . E 4 6.092 31.417 14.295 1 224.6 -1 O1A ATP 1287 X 1 HETATM 11 O O2A ATP . . . E 4 7.614 29.536 13.812 1 224.04 ? O2A ATP 1287 X 1 HETATM 12 O O3A ATP . . . E 4 6.702 29.744 16.181 1 315.89 ? O3A ATP 1287 X 1 HETATM 13 O O5' ATP . . . E 4 5.186 29.077 14.152 1 216.89 ? O5' ATP 1287 X 1 HETATM 14 C C5' ATP . . . E 4 3.876 29.519 14.363 1 211.18 ? C5' ATP 1287 X 1 HETATM 15 C C4' ATP . . . E 4 3.29 29.352 15.638 1 206.74 ? C4' ATP 1287 X 1 HETATM 16 O O4' ATP . . . E 4 3.584 30.53 16.468 1 206.09 ? O4' ATP 1287 X 1 HETATM 17 C C3' ATP . . . E 4 1.827 29.274 15.515 1 202.16 ? C3' ATP 1287 X 1 HETATM 18 O O3' ATP . . . E 4 1.403 27.976 15.728 1 200.39 ? O3' ATP 1287 X 1 HETATM 19 C C2' ATP . . . E 4 1.281 30.139 16.565 1 199.64 ? C2' ATP 1287 X 1 HETATM 20 O O2' ATP . . . E 4 0.843 29.371 17.628 1 195.28 ? O2' ATP 1287 X 1 HETATM 21 C C1' ATP . . . E 4 2.394 31.041 16.995 1 202.31 ? C1' ATP 1287 X 1 HETATM 22 N N9 ATP . . . E 4 2.154 32.462 16.655 1 199.97 ? N9 ATP 1287 X 1 HETATM 23 C C8 ATP . . . E 4 1.094 33.198 17.033 1 198.78 ? C8 ATP 1287 X 1 HETATM 24 N N7 ATP . . . E 4 1.246 34.436 16.522 1 197.77 ? N7 ATP 1287 X 1 HETATM 25 C C5 ATP . . . E 4 2.403 34.488 15.818 1 197.14 ? C5 ATP 1287 X 1 HETATM 26 C C6 ATP . . . E 4 3.046 35.491 15.094 1 195.37 ? C6 ATP 1287 X 1 HETATM 27 N N6 ATP . . . E 4 2.477 36.781 14.991 1 194.2 ? N6 ATP 1287 X 1 HETATM 28 N N1 ATP . . . E 4 4.228 35.216 14.485 1 195.49 ? N1 ATP 1287 X 1 HETATM 29 C C2 ATP . . . E 4 4.769 33.993 14.581 1 195.63 ? C2 ATP 1287 X 1 HETATM 30 N N3 ATP . . . E 4 4.171 33.019 15.269 1 196.47 ? N3 ATP 1287 X 1 HETATM 31 C C4 ATP . . . E 4 2.991 33.219 15.901 1 198.09 ? C4 ATP 1287 X 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 998 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #