data_4C69
#
_model_server_result.job_id            eoeX-3vYPik0FVuqMiNTlw 
_model_server_result.datetime_utc      '2024-11-22 09:30:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4c69 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1288}' 
#
_entry.id    4C69 
#
_exptl.entry_id    4C69 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              677.933 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          99.25 
_cell.angle_gamma         90 
_cell.entry_id            4C69 
_cell.length_a            100.152 
_cell.length_b            58.369 
_cell.length_c            66.545 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4C69 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 F N N 
#
_chem_comp.formula           'C36 H72 N O8 P' 
_chem_comp.formula_weight    677.933 
_chem_comp.id                MC3 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MC3 sing 313 n n 
C1 O3P MC3 sing 314 n n 
C1 H11 MC3 sing 315 n n 
C1 H12 MC3 sing 316 n n 
C2 C3 MC3 sing 317 n n 
C2 O2 MC3 sing 318 n n 
C2 H2 MC3 sing 319 n n 
C3 O3 MC3 sing 320 n n 
C3 H31 MC3 sing 321 n n 
C3 H32 MC3 sing 322 n n 
C4 C5 MC3 sing 323 n n 
C4 O4P MC3 sing 324 n n 
C4 H41 MC3 sing 325 n n 
C4 H42 MC3 sing 326 n n 
C5 N MC3 sing 327 n n 
C5 H51 MC3 sing 328 n n 
C5 H52 MC3 sing 329 n n 
C6 N MC3 sing 330 n n 
C6 H61 MC3 sing 331 n n 
C6 H62 MC3 sing 332 n n 
C6 H63 MC3 sing 333 n n 
C7 N MC3 sing 334 n n 
C7 H71 MC3 sing 335 n n 
C7 H72 MC3 sing 336 n n 
C7 H73 MC3 sing 337 n n 
C8 N MC3 sing 338 n n 
C8 H81 MC3 sing 339 n n 
C8 H82 MC3 sing 340 n n 
C8 H83 MC3 sing 341 n n 
C11 C12 MC3 sing 342 n n 
C11 O3 MC3 sing 343 n n 
C11 O11 MC3 doub 344 n n 
C12 C13 MC3 sing 345 n n 
C12 H121 MC3 sing 346 n n 
C12 H122 MC3 sing 347 n n 
C13 C14 MC3 sing 348 n n 
C13 H131 MC3 sing 349 n n 
C13 H132 MC3 sing 350 n n 
C14 C15 MC3 sing 351 n n 
C14 H141 MC3 sing 352 n n 
C14 H142 MC3 sing 353 n n 
C15 C16 MC3 sing 354 n n 
C15 H151 MC3 sing 355 n n 
C15 H152 MC3 sing 356 n n 
C16 C17 MC3 sing 357 n n 
C16 H161 MC3 sing 358 n n 
C16 H162 MC3 sing 359 n n 
C17 C18 MC3 sing 360 n n 
C17 H171 MC3 sing 361 n n 
C17 H172 MC3 sing 362 n n 
C18 C19 MC3 sing 363 n n 
C18 H181 MC3 sing 364 n n 
C18 H182 MC3 sing 365 n n 
C19 C20 MC3 sing 366 n n 
C19 H191 MC3 sing 367 n n 
C19 H192 MC3 sing 368 n n 
C20 C21 MC3 sing 369 n n 
C20 H201 MC3 sing 370 n n 
C20 H202 MC3 sing 371 n n 
C21 C22 MC3 sing 372 n n 
C21 H211 MC3 sing 373 n n 
C21 H212 MC3 sing 374 n n 
C22 C23 MC3 sing 375 n n 
C22 H221 MC3 sing 376 n n 
C22 H222 MC3 sing 377 n n 
C23 C24 MC3 sing 378 n n 
C23 H231 MC3 sing 379 n n 
C23 H232 MC3 sing 380 n n 
C24 H241 MC3 sing 381 n n 
C24 H242 MC3 sing 382 n n 
C24 H243 MC3 sing 383 n n 
C31 C32 MC3 sing 384 n n 
C31 O2 MC3 sing 385 n n 
C31 O31 MC3 doub 386 n n 
C32 C33 MC3 sing 387 n n 
C32 H321 MC3 sing 388 n n 
C32 H322 MC3 sing 389 n n 
C33 C34 MC3 sing 390 n n 
C33 H331 MC3 sing 391 n n 
C33 H332 MC3 sing 392 n n 
C34 C35 MC3 sing 393 n n 
C34 H341 MC3 sing 394 n n 
C34 H342 MC3 sing 395 n n 
C35 C36 MC3 sing 396 n n 
C35 H351 MC3 sing 397 n n 
C35 H352 MC3 sing 398 n n 
C36 C37 MC3 sing 399 n n 
C36 H361 MC3 sing 400 n n 
C36 H362 MC3 sing 401 n n 
C37 C38 MC3 sing 402 n n 
C37 H371 MC3 sing 403 n n 
C37 H372 MC3 sing 404 n n 
C38 C39 MC3 sing 405 n n 
C38 H381 MC3 sing 406 n n 
C38 H382 MC3 sing 407 n n 
C39 C40 MC3 sing 408 n n 
C39 H391 MC3 sing 409 n n 
C39 H392 MC3 sing 410 n n 
C40 C41 MC3 sing 411 n n 
C40 H401 MC3 sing 412 n n 
C40 H402 MC3 sing 413 n n 
C41 C42 MC3 sing 414 n n 
C41 H411 MC3 sing 415 n n 
C41 H412 MC3 sing 416 n n 
C42 C43 MC3 sing 417 n n 
C42 H421 MC3 sing 418 n n 
C42 H422 MC3 sing 419 n n 
C43 C44 MC3 sing 420 n n 
C43 H431 MC3 sing 421 n n 
C43 H432 MC3 sing 422 n n 
C44 H441 MC3 sing 423 n n 
C44 H442 MC3 sing 424 n n 
C44 H443 MC3 sing 425 n n 
O1P P MC3 doub 426 n n 
O2P P MC3 sing 427 n n 
O3P P MC3 sing 428 n n 
O4P P MC3 sing 429 n n 
#
_atom_sites.entry_id                     4C69 
_atom_sites.fract_transf_matrix[1][1]    0.009985 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001626 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017132 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015225 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 LDA X 1 1284 1284 LDA LDA . 
C 3 MC3 X 1 1285 1285 MC3 MC3 . 
D 2 LDA X 1 1286 1286 LDA LDA . 
E 4 ATP X 1 1287 1287 ATP ATP . 
F 3 MC3 X 1 1288 1288 MC3 MC3 . 
G 2 LDA X 1 1289 1289 LDA LDA . 
H 2 LDA X 1 1290 1290 LDA LDA . 
I 2 LDA X 1 1291 1291 LDA LDA . 
J 2 LDA X 1 1292 1292 LDA LDA . 
K 5 HOH X 1 2001 2001 HOH HOH . 
K 5 HOH X 2 2002 2002 HOH HOH . 
K 5 HOH X 3 2003 2003 HOH HOH . 
K 5 HOH X 4 2004 2004 HOH HOH . 
K 5 HOH X 5 2005 2005 HOH HOH . 
K 5 HOH X 6 2006 2006 HOH HOH . 
K 5 HOH X 7 2007 2007 HOH HOH . 
K 5 HOH X 8 2008 2008 HOH HOH . 
K 5 HOH X 9 2009 2009 HOH HOH . 
K 5 HOH X 10 2010 2010 HOH HOH . 
K 5 HOH X 11 2011 2011 HOH HOH . 
K 5 HOH X 12 2012 2012 HOH HOH . 
K 5 HOH X 13 2013 2013 HOH HOH . 
K 5 HOH X 14 2014 2014 HOH HOH . 
K 5 HOH X 15 2015 2015 HOH HOH . 
K 5 HOH X 16 2016 2016 HOH HOH . 
K 5 HOH X 17 2017 2017 HOH HOH . 
K 5 HOH X 18 2018 2018 HOH HOH . 
K 5 HOH X 19 2019 2019 HOH HOH . 
K 5 HOH X 20 2020 2020 HOH HOH . 
K 5 HOH X 21 2021 2021 HOH HOH . 
K 5 HOH X 22 2022 2022 HOH HOH . 
K 5 HOH X 23 2023 2023 HOH HOH . 
K 5 HOH X 24 2024 2024 HOH HOH . 
K 5 HOH X 25 2025 2025 HOH HOH . 
K 5 HOH X 26 2026 2026 HOH HOH . 
K 5 HOH X 27 2027 2027 HOH HOH . 
K 5 HOH X 28 2028 2028 HOH HOH . 
K 5 HOH X 29 2029 2029 HOH HOH . 
K 5 HOH X 30 2030 2030 HOH HOH . 
K 5 HOH X 31 2031 2031 HOH HOH . 
K 5 HOH X 32 2032 2032 HOH HOH . 
K 5 HOH X 33 2033 2033 HOH HOH . 
K 5 HOH X 34 2034 2034 HOH HOH . 
K 5 HOH X 35 2035 2035 HOH HOH . 
K 5 HOH X 36 2036 2036 HOH HOH . 
K 5 HOH X 37 2037 2037 HOH HOH . 
K 5 HOH X 38 2038 2038 HOH HOH . 
K 5 HOH X 39 2039 2039 HOH HOH . 
K 5 HOH X 40 2040 2040 HOH HOH . 
K 5 HOH X 41 2041 2041 HOH HOH . 
K 5 HOH X 42 2042 2042 HOH HOH . 
K 5 HOH X 43 2043 2043 HOH HOH . 
K 5 HOH X 44 2044 2044 HOH HOH . 
K 5 HOH X 45 2045 2045 HOH HOH . 
K 5 HOH X 46 2046 2046 HOH HOH . 
K 5 HOH X 47 2047 2047 HOH HOH . 
K 5 HOH X 48 2048 2048 HOH HOH . 
K 5 HOH X 49 2049 2049 HOH HOH . 
K 5 HOH X 50 2050 2050 HOH HOH . 
K 5 HOH X 51 2051 2051 HOH HOH . 
K 5 HOH X 52 2052 2052 HOH HOH . 
K 5 HOH X 53 2053 2053 HOH HOH . 
K 5 HOH X 54 2054 2054 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MC3 . . . F 3 30.699 38.473 33.901 1 97.36 ? C1 MC3 1288 X 1 
HETATM 2 C C2 MC3 . . . F 3 29.329 38.005 34.459 1 82.99 ? C2 MC3 1288 X 1 
HETATM 3 C C3 MC3 . . . F 3 29.526 37.184 35.695 1 79.25 ? C3 MC3 1288 X 1 
HETATM 4 C C4 MC3 . . . F 3 35.283 37.326 31.703 1 97.52 ? C4 MC3 1288 X 1 
HETATM 5 C C5 MC3 . . . F 3 36.552 37.427 32.558 1 102.27 ? C5 MC3 1288 X 1 
HETATM 6 C C6 MC3 . . . F 3 37.968 38.436 30.873 1 98.63 ? C6 MC3 1288 X 1 
HETATM 7 C C7 MC3 . . . F 3 38.709 38.252 33.141 1 97.65 ? C7 MC3 1288 X 1 
HETATM 8 C C8 MC3 . . . F 3 37.01 39.822 32.611 1 101.85 ? C8 MC3 1288 X 1 
HETATM 9 C C31 MC3 . . . F 3 27.124 39.045 34.948 1 77.26 ? C31 MC3 1288 X 1 
HETATM 10 C C32 MC3 . . . F 3 26.095 39.786 34.112 1 71.18 ? C32 MC3 1288 X 1 
HETATM 11 C C33 MC3 . . . F 3 24.65 39.765 34.583 1 64.61 ? C33 MC3 1288 X 1 
HETATM 12 C C34 MC3 . . . F 3 23.589 39.642 33.522 1 68.69 ? C34 MC3 1288 X 1 
HETATM 13 C C35 MC3 . . . F 3 22.31 40.479 33.599 1 68.62 ? C35 MC3 1288 X 1 
HETATM 14 C C36 MC3 . . . F 3 21.978 41.274 32.343 1 63.01 ? C36 MC3 1288 X 1 
HETATM 15 C C37 MC3 . . . F 3 20.577 41.825 32.137 1 63.14 ? C37 MC3 1288 X 1 
HETATM 16 N N MC3 . . . F 3 37.562 38.473 32.286 1 100.18 ? N MC3 1288 X 1 
HETATM 17 O O2 MC3 . . . F 3 28.497 39.136 34.637 1 83.99 ? O2 MC3 1288 X 1 
HETATM 18 O O31 MC3 . . . F 3 26.778 38.642 36.042 1 73.01 ? O31 MC3 1288 X 1 
HETATM 19 O O1P MC3 . . . F 3 33.362 39.288 33.023 1 178.62 ? O1P MC3 1288 X 1 
HETATM 20 O O2P MC3 . . . F 3 32.219 38.059 30.989 1 78.22 ? O2P MC3 1288 X 1 
HETATM 21 O O3P MC3 . . . F 3 31.62 37.515 33.407 1 100.92 ? O3P MC3 1288 X 1 
HETATM 22 O O4P MC3 . . . F 3 34.051 36.969 32.376 1 93.95 ? O4P MC3 1288 X 1 
HETATM 23 P P MC3 . . . F 3 32.817 37.994 32.434 1 179.88 ? P MC3 1288 X 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           23 
#