data_4C6U # _model_server_result.job_id c7qA79r3t-G5n-yb_PLAUw _model_server_result.datetime_utc '2024-10-14 04:27:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4c6u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1421}' # _entry.id 4C6U # _exptl.entry_id 4C6U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.303 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5R)-3-acetyl-4-hydroxy-5-methyl-5-[(1Z)-2-methylbuta-1,3-dien-1-yl]thiophen-2(5H)-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4C6U _cell.length_a 77.582 _cell.length_b 77.582 _cell.length_c 147.65 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4C6U _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_554 -x,-x+y,-z-2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -98.433333 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASN 332 A ASN 309 1_555 E K K . A K 1420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.887 ? metalc ? metalc2 A OD1 ASN 332 A ASN 309 1_555 E K K . A K 1420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.649 ? metalc ? metalc3 A O ALA 333 A ALA 310 1_555 E K K . A K 1420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.82 ? metalc ? metalc4 A OE1 GLU 377 A GLU 354 1_555 E K K . A K 1420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc5 A OD1 ASN 422 A ASN 399 1_555 E K K . A K 1420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc6 A O ASN 423 A ASN 400 1_555 E K K . A K 1420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.711 ? # _chem_comp.formula 'C12 H14 O3 S' _chem_comp.formula_weight 238.303 _chem_comp.id TLG _chem_comp.mon_nstd_flag . _chem_comp.name (5R)-3-acetyl-4-hydroxy-5-methyl-5-[(1Z)-2-methylbuta-1,3-dien-1-yl]thiophen-2(5H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S C4 TLG sing 315 n n S C11 TLG sing 316 n n C1 C9 TLG sing 317 n n C3 C4 TLG sing 318 n n C4 C10 TLG sing 319 n n C4 C15 TLG sing 320 n n O6 C15 TLG sing 321 n n C7 C8 TLG doub 322 n n C8 C9 TLG sing 323 n n C9 C10 TLG doub 324 z n C11 O11 TLG doub 325 n n C11 C12 TLG sing 326 n n C12 C13 TLG sing 327 n n C12 C15 TLG doub 328 n n C13 C14 TLG sing 329 n n C13 ONA TLG doub 330 n n C1 H1 TLG sing 331 n n C1 H1A TLG sing 332 n n C1 H1B TLG sing 333 n n C3 H3 TLG sing 334 n n C3 H3A TLG sing 335 n n C3 H3B TLG sing 336 n n O6 HO6 TLG sing 337 n n C7 H7 TLG sing 338 n n C7 H7A TLG sing 339 n n C8 H8 TLG sing 340 n n C10 H10 TLG sing 341 n n C14 H14 TLG sing 342 n n C14 H14A TLG sing 343 n n C14 H14B TLG sing 344 n n # _atom_sites.entry_id 4C6U _atom_sites.fract_transf_matrix[1][1] 0.01289 _atom_sites.fract_transf_matrix[1][2] 0.007442 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014884 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006773 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 1417 1417 EDO EDO . C 3 CL A 1 1418 1418 CL CL . D 2 EDO A 1 1419 1419 EDO EDO . E 4 K A 1 1420 1420 K K . F 5 TLG A 1 1421 1421 TLG TLG . G 2 EDO A 1 1422 1422 EDO EDO . H 6 HOH A 1 2001 2001 HOH HOH . H 6 HOH A 2 2002 2002 HOH HOH . H 6 HOH A 3 2003 2003 HOH HOH . H 6 HOH A 4 2004 2004 HOH HOH . H 6 HOH A 5 2005 2005 HOH HOH . H 6 HOH A 6 2006 2006 HOH HOH . H 6 HOH A 7 2007 2007 HOH HOH . H 6 HOH A 8 2008 2008 HOH HOH . H 6 HOH A 9 2009 2009 HOH HOH . H 6 HOH A 10 2010 2010 HOH HOH . H 6 HOH A 11 2011 2011 HOH HOH . H 6 HOH A 12 2012 2012 HOH HOH . H 6 HOH A 13 2013 2013 HOH HOH . H 6 HOH A 14 2014 2014 HOH HOH . H 6 HOH A 15 2015 2015 HOH HOH . H 6 HOH A 16 2016 2016 HOH HOH . H 6 HOH A 17 2017 2017 HOH HOH . H 6 HOH A 18 2018 2018 HOH HOH . H 6 HOH A 19 2019 2019 HOH HOH . H 6 HOH A 20 2020 2020 HOH HOH . H 6 HOH A 21 2021 2021 HOH HOH . H 6 HOH A 22 2022 2022 HOH HOH . H 6 HOH A 23 2023 2023 HOH HOH . H 6 HOH A 24 2024 2024 HOH HOH . H 6 HOH A 25 2025 2025 HOH HOH . H 6 HOH A 26 2026 2026 HOH HOH . H 6 HOH A 27 2027 2027 HOH HOH . H 6 HOH A 28 2028 2028 HOH HOH . H 6 HOH A 29 2029 2029 HOH HOH . H 6 HOH A 30 2030 2030 HOH HOH . H 6 HOH A 31 2031 2031 HOH HOH . H 6 HOH A 32 2032 2032 HOH HOH . H 6 HOH A 33 2033 2033 HOH HOH . H 6 HOH A 34 2034 2034 HOH HOH . H 6 HOH A 35 2035 2035 HOH HOH . H 6 HOH A 36 2036 2036 HOH HOH . H 6 HOH A 37 2037 2037 HOH HOH . H 6 HOH A 38 2038 2038 HOH HOH . H 6 HOH A 39 2039 2039 HOH HOH . H 6 HOH A 40 2040 2040 HOH HOH . H 6 HOH A 41 2041 2041 HOH HOH . H 6 HOH A 42 2042 2042 HOH HOH . H 6 HOH A 43 2043 2043 HOH HOH . H 6 HOH A 44 2044 2044 HOH HOH . H 6 HOH A 45 2045 2045 HOH HOH . H 6 HOH A 46 2046 2046 HOH HOH . H 6 HOH A 47 2047 2047 HOH HOH . H 6 HOH A 48 2048 2048 HOH HOH . H 6 HOH A 49 2049 2049 HOH HOH . H 6 HOH A 50 2050 2050 HOH HOH . H 6 HOH A 51 2051 2051 HOH HOH . H 6 HOH A 52 2052 2052 HOH HOH . H 6 HOH A 53 2053 2053 HOH HOH . H 6 HOH A 54 2054 2054 HOH HOH . H 6 HOH A 55 2055 2055 HOH HOH . H 6 HOH A 56 2056 2056 HOH HOH . H 6 HOH A 57 2057 2057 HOH HOH . H 6 HOH A 58 2058 2058 HOH HOH . H 6 HOH A 59 2059 2059 HOH HOH . H 6 HOH A 60 2060 2060 HOH HOH . H 6 HOH A 61 2061 2061 HOH HOH . H 6 HOH A 62 2062 2062 HOH HOH . H 6 HOH A 63 2063 2063 HOH HOH . H 6 HOH A 64 2064 2064 HOH HOH . H 6 HOH A 65 2065 2065 HOH HOH . H 6 HOH A 66 2066 2066 HOH HOH . H 6 HOH A 67 2067 2067 HOH HOH . H 6 HOH A 68 2068 2068 HOH HOH . H 6 HOH A 69 2069 2069 HOH HOH . H 6 HOH A 70 2070 2070 HOH HOH . H 6 HOH A 71 2071 2071 HOH HOH . H 6 HOH A 72 2072 2072 HOH HOH . H 6 HOH A 73 2073 2073 HOH HOH . H 6 HOH A 74 2074 2074 HOH HOH . H 6 HOH A 75 2075 2075 HOH HOH . H 6 HOH A 76 2076 2076 HOH HOH . H 6 HOH A 77 2077 2077 HOH HOH . H 6 HOH A 78 2078 2078 HOH HOH . H 6 HOH A 79 2079 2079 HOH HOH . H 6 HOH A 80 2080 2080 HOH HOH . H 6 HOH A 81 2081 2081 HOH HOH . H 6 HOH A 82 2082 2082 HOH HOH . H 6 HOH A 83 2083 2083 HOH HOH . H 6 HOH A 84 2084 2084 HOH HOH . H 6 HOH A 85 2085 2085 HOH HOH . H 6 HOH A 86 2086 2086 HOH HOH . H 6 HOH A 87 2087 2087 HOH HOH . H 6 HOH A 88 2088 2088 HOH HOH . H 6 HOH A 89 2089 2089 HOH HOH . H 6 HOH A 90 2090 2090 HOH HOH . H 6 HOH A 91 2091 2091 HOH HOH . H 6 HOH A 92 2092 2092 HOH HOH . H 6 HOH A 93 2093 2093 HOH HOH . H 6 HOH A 94 2094 2094 HOH HOH . H 6 HOH A 95 2095 2095 HOH HOH . H 6 HOH A 96 2096 2096 HOH HOH . H 6 HOH A 97 2097 2097 HOH HOH . H 6 HOH A 98 2098 2098 HOH HOH . H 6 HOH A 99 2099 2099 HOH HOH . H 6 HOH A 100 2100 2100 HOH HOH . H 6 HOH A 101 2101 2101 HOH HOH . H 6 HOH A 102 2102 2102 HOH HOH . H 6 HOH A 103 2103 2103 HOH HOH . H 6 HOH A 104 2104 2104 HOH HOH . H 6 HOH A 105 2105 2105 HOH HOH . H 6 HOH A 106 2106 2106 HOH HOH . H 6 HOH A 107 2107 2107 HOH HOH . H 6 HOH A 108 2108 2108 HOH HOH . H 6 HOH A 109 2109 2109 HOH HOH . H 6 HOH A 110 2110 2110 HOH HOH . H 6 HOH A 111 2111 2111 HOH HOH . H 6 HOH A 112 2112 2112 HOH HOH . H 6 HOH A 113 2113 2113 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S TLG . . . F 5 -20.021 35.109 -31.986 1 86.95 ? S TLG 1421 A 1 HETATM 2 C C1 TLG . . . F 5 -16.163 37.618 -32.696 1 86.51 ? C1 TLG 1421 A 1 HETATM 3 C C3 TLG . . . F 5 -19.207 35.945 -29.481 1 85.16 ? C3 TLG 1421 A 1 HETATM 4 C C4 TLG . . . F 5 -18.632 35.254 -30.729 1 87.06 ? C4 TLG 1421 A 1 HETATM 5 O O6 TLG . . . F 5 -17.485 33.6 -29.3 1 87.47 ? O6 TLG 1421 A 1 HETATM 6 C C7 TLG . . . F 5 -18.499 39.425 -32.229 1 84.66 ? C7 TLG 1421 A 1 HETATM 7 C C8 TLG . . . F 5 -18.502 38.156 -31.894 1 84.65 ? C8 TLG 1421 A 1 HETATM 8 C C9 TLG . . . F 5 -17.417 37.156 -32.005 1 84.77 ? C9 TLG 1421 A 1 HETATM 9 C C10 TLG . . . F 5 -17.449 35.921 -31.42 1 84.29 ? C10 TLG 1421 A 1 HETATM 10 C C11 TLG . . . F 5 -20.083 33.297 -31.915 1 81.75 ? C11 TLG 1421 A 1 HETATM 11 O O11 TLG . . . F 5 -20.903 32.656 -32.535 1 80.66 ? O11 TLG 1421 A 1 HETATM 12 C C12 TLG . . . F 5 -19.053 32.837 -30.979 1 84.79 ? C12 TLG 1421 A 1 HETATM 13 C C13 TLG . . . F 5 -18.77 31.431 -30.693 1 88.21 ? C13 TLG 1421 A 1 HETATM 14 C C14 TLG . . . F 5 -17.716 31.053 -29.698 1 90.37 ? C14 TLG 1421 A 1 HETATM 15 C C15 TLG . . . F 5 -18.344 33.814 -30.319 1 85.26 ? C15 TLG 1421 A 1 HETATM 16 O ONA TLG . . . F 5 -19.307 30.546 -31.364 1 87.85 ? ONA TLG 1421 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #