data_4C6V
#
_model_server_result.job_id            894yF4jP5QnTKh1zyX4NDg 
_model_server_result.datetime_utc      '2024-11-15 03:57:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4c6v 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1419}' 
#
_entry.id    4C6V 
#
_exptl.entry_id    4C6V 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              238.303 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (5R)-3-acetyl-4-hydroxy-5-methyl-5-[(1Z)-2-methylbuta-1,3-dien-1-yl]thiophen-2(5H)-one 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4C6V 
_cell.length_a            77.23 
_cell.length_b            77.23 
_cell.length_c            146.851 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4C6V 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_555 x-y,-y,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 0 97.900667 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASN 332 A ASN 309 1_555 C K K . A K 1418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.833 ? 
metalc ? metalc2 A O ASN 332 A ASN 309 1_555 C K K . A K 1418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? 
metalc ? metalc3 A O ALA 333 A ALA 310 1_555 C K K . A K 1418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.941 ? 
metalc ? metalc4 A OE1 GLU 377 A GLU 354 1_555 C K K . A K 1418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? 
metalc ? metalc5 A OD1 ASN 422 A ASN 399 1_555 C K K . A K 1418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? 
metalc ? metalc6 A O ASN 423 A ASN 400 1_555 C K K . A K 1418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.718 ? 
#
_chem_comp.formula           'C12 H14 O3 S' 
_chem_comp.formula_weight    238.303 
_chem_comp.id                TLG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (5R)-3-acetyl-4-hydroxy-5-methyl-5-[(1Z)-2-methylbuta-1,3-dien-1-yl]thiophen-2(5H)-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S C4 TLG sing 315 n n 
S C11 TLG sing 316 n n 
C1 C9 TLG sing 317 n n 
C3 C4 TLG sing 318 n n 
C4 C10 TLG sing 319 n n 
C4 C15 TLG sing 320 n n 
O6 C15 TLG sing 321 n n 
C7 C8 TLG doub 322 n n 
C8 C9 TLG sing 323 n n 
C9 C10 TLG doub 324 z n 
C11 O11 TLG doub 325 n n 
C11 C12 TLG sing 326 n n 
C12 C13 TLG sing 327 n n 
C12 C15 TLG doub 328 n n 
C13 C14 TLG sing 329 n n 
C13 ONA TLG doub 330 n n 
C1 H1 TLG sing 331 n n 
C1 H1A TLG sing 332 n n 
C1 H1B TLG sing 333 n n 
C3 H3 TLG sing 334 n n 
C3 H3A TLG sing 335 n n 
C3 H3B TLG sing 336 n n 
O6 HO6 TLG sing 337 n n 
C7 H7 TLG sing 338 n n 
C7 H7A TLG sing 339 n n 
C8 H8 TLG sing 340 n n 
C10 H10 TLG sing 341 n n 
C14 H14 TLG sing 342 n n 
C14 H14A TLG sing 343 n n 
C14 H14B TLG sing 344 n n 
#
_atom_sites.entry_id                     4C6V 
_atom_sites.fract_transf_matrix[1][1]    0.012948 
_atom_sites.fract_transf_matrix[1][2]    0.007476 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014951 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00681 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 EDO A 1 1417 1417 EDO EDO . 
C 3 K A 1 1418 1418 K K . 
D 4 TLG A 1 1419 1419 TLG TLG . 
E 5 HOH A 1 2001 2001 HOH HOH . 
E 5 HOH A 2 2002 2002 HOH HOH . 
E 5 HOH A 3 2003 2003 HOH HOH . 
E 5 HOH A 4 2004 2004 HOH HOH . 
E 5 HOH A 5 2005 2005 HOH HOH . 
E 5 HOH A 6 2006 2006 HOH HOH . 
E 5 HOH A 7 2007 2007 HOH HOH . 
E 5 HOH A 8 2008 2008 HOH HOH . 
E 5 HOH A 9 2009 2009 HOH HOH . 
E 5 HOH A 10 2010 2010 HOH HOH . 
E 5 HOH A 11 2011 2011 HOH HOH . 
E 5 HOH A 12 2012 2012 HOH HOH . 
E 5 HOH A 13 2013 2013 HOH HOH . 
E 5 HOH A 14 2014 2014 HOH HOH . 
E 5 HOH A 15 2015 2015 HOH HOH . 
E 5 HOH A 16 2016 2016 HOH HOH . 
E 5 HOH A 17 2017 2017 HOH HOH . 
E 5 HOH A 18 2018 2018 HOH HOH . 
E 5 HOH A 19 2019 2019 HOH HOH . 
E 5 HOH A 20 2020 2020 HOH HOH . 
E 5 HOH A 21 2021 2021 HOH HOH . 
E 5 HOH A 22 2022 2022 HOH HOH . 
E 5 HOH A 23 2023 2023 HOH HOH . 
E 5 HOH A 24 2024 2024 HOH HOH . 
E 5 HOH A 25 2025 2025 HOH HOH . 
E 5 HOH A 26 2026 2026 HOH HOH . 
E 5 HOH A 27 2027 2027 HOH HOH . 
E 5 HOH A 28 2028 2028 HOH HOH . 
E 5 HOH A 29 2029 2029 HOH HOH . 
E 5 HOH A 30 2030 2030 HOH HOH . 
E 5 HOH A 31 2031 2031 HOH HOH . 
E 5 HOH A 32 2032 2032 HOH HOH . 
E 5 HOH A 33 2033 2033 HOH HOH . 
E 5 HOH A 34 2034 2034 HOH HOH . 
E 5 HOH A 35 2035 2035 HOH HOH . 
E 5 HOH A 36 2036 2036 HOH HOH . 
E 5 HOH A 37 2037 2037 HOH HOH . 
E 5 HOH A 38 2038 2038 HOH HOH . 
E 5 HOH A 39 2039 2039 HOH HOH . 
E 5 HOH A 40 2040 2040 HOH HOH . 
E 5 HOH A 41 2041 2041 HOH HOH . 
E 5 HOH A 42 2042 2042 HOH HOH . 
E 5 HOH A 43 2043 2043 HOH HOH . 
E 5 HOH A 44 2044 2044 HOH HOH . 
E 5 HOH A 45 2045 2045 HOH HOH . 
E 5 HOH A 46 2046 2046 HOH HOH . 
E 5 HOH A 47 2047 2047 HOH HOH . 
E 5 HOH A 48 2048 2048 HOH HOH . 
E 5 HOH A 49 2049 2049 HOH HOH . 
E 5 HOH A 50 2050 2050 HOH HOH . 
E 5 HOH A 51 2051 2051 HOH HOH . 
E 5 HOH A 52 2052 2052 HOH HOH . 
E 5 HOH A 53 2053 2053 HOH HOH . 
E 5 HOH A 54 2054 2054 HOH HOH . 
E 5 HOH A 55 2055 2055 HOH HOH . 
E 5 HOH A 56 2056 2056 HOH HOH . 
E 5 HOH A 57 2057 2057 HOH HOH . 
E 5 HOH A 58 2058 2058 HOH HOH . 
E 5 HOH A 59 2059 2059 HOH HOH . 
E 5 HOH A 60 2060 2060 HOH HOH . 
E 5 HOH A 61 2061 2061 HOH HOH . 
E 5 HOH A 62 2062 2062 HOH HOH . 
E 5 HOH A 63 2063 2063 HOH HOH . 
E 5 HOH A 64 2064 2064 HOH HOH . 
E 5 HOH A 65 2065 2065 HOH HOH . 
E 5 HOH A 66 2066 2066 HOH HOH . 
E 5 HOH A 67 2067 2067 HOH HOH . 
E 5 HOH A 68 2068 2068 HOH HOH . 
E 5 HOH A 69 2069 2069 HOH HOH . 
E 5 HOH A 70 2070 2070 HOH HOH . 
E 5 HOH A 71 2071 2071 HOH HOH . 
E 5 HOH A 72 2072 2072 HOH HOH . 
E 5 HOH A 73 2073 2073 HOH HOH . 
E 5 HOH A 74 2074 2074 HOH HOH . 
E 5 HOH A 75 2075 2075 HOH HOH . 
E 5 HOH A 76 2076 2076 HOH HOH . 
E 5 HOH A 77 2077 2077 HOH HOH . 
E 5 HOH A 78 2078 2078 HOH HOH . 
E 5 HOH A 79 2079 2079 HOH HOH . 
E 5 HOH A 80 2080 2080 HOH HOH . 
E 5 HOH A 81 2081 2081 HOH HOH . 
E 5 HOH A 82 2082 2082 HOH HOH . 
E 5 HOH A 83 2083 2083 HOH HOH . 
E 5 HOH A 84 2084 2084 HOH HOH . 
E 5 HOH A 85 2085 2085 HOH HOH . 
E 5 HOH A 86 2086 2086 HOH HOH . 
E 5 HOH A 87 2087 2087 HOH HOH . 
E 5 HOH A 88 2088 2088 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S TLG . . . D 4 40.145 0.185 31.924 1 79.65 ? S TLG 1419 A 1 
HETATM 2 C C1 TLG . . . D 4 40.223 4.88 32.589 1 79.28 ? C1 TLG 1419 A 1 
HETATM 3 C C3 TLG . . . D 4 40.681 1.379 29.459 1 79.5 ? C3 TLG 1419 A 1 
HETATM 4 C C4 TLG . . . D 4 39.698 1.494 30.651 1 79.33 ? C4 TLG 1419 A 1 
HETATM 5 O O6 TLG . . . D 4 37.701 1.845 29.168 1 78.59 ? O6 TLG 1419 A 1 
HETATM 6 C C7 TLG . . . D 4 43.069 4.017 32.205 1 78.55 ? C7 TLG 1419 A 1 
HETATM 7 C C8 TLG . . . D 4 42.047 3.291 31.821 1 78.79 ? C8 TLG 1419 A 1 
HETATM 8 C C9 TLG . . . D 4 40.602 3.592 31.911 1 78.59 ? C9 TLG 1419 A 1 
HETATM 9 C C10 TLG . . . D 4 39.618 2.826 31.372 1 78.39 ? C10 TLG 1419 A 1 
HETATM 10 C C11 TLG . . . D 4 38.6 -0.737 31.78 1 78.6 ? C11 TLG 1419 A 1 
HETATM 11 O O11 TLG . . . D 4 38.384 -1.742 32.428 1 78.29 ? O11 TLG 1419 A 1 
HETATM 12 C C12 TLG . . . D 4 37.762 -0.062 30.768 1 79.34 ? C12 TLG 1419 A 1 
HETATM 13 C C13 TLG . . . D 4 36.432 -0.523 30.412 1 80.63 ? C13 TLG 1419 A 1 
HETATM 14 C C14 TLG . . . D 4 35.635 0.161 29.342 1 82.14 ? C14 TLG 1419 A 1 
HETATM 15 C C15 TLG . . . D 4 38.301 1.079 30.158 1 79.5 ? C15 TLG 1419 A 1 
HETATM 16 O ONA TLG . . . D 4 35.901 -1.417 31.073 1 81.15 ? ONA TLG 1419 A 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           336 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           16 
#