data_4C77 # _model_server_result.job_id VqO7kYNH8NgaCitq8W9C0w _model_server_result.datetime_utc '2024-11-15 20:19:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4c77 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":700}' # _entry.id 4C77 # _exptl.entry_id 4C77 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4C77 _cell.length_a 107.36 _cell.length_b 107.36 _cell.length_c 106.79 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4C77 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 4C77 _atom_sites.fract_transf_matrix[1][1] 0.009314 _atom_sites.fract_transf_matrix[1][2] 0.005378 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010755 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009364 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 700 700 FAD FAD . C 3 N01 A 1 701 701 N01 N01 . D 4 P6G A 1 1543 1543 P6G P6G . E 5 HOH A 1 2001 2001 HOH HOH . E 5 HOH A 2 2002 2002 HOH HOH . E 5 HOH A 3 2003 2003 HOH HOH . E 5 HOH A 4 2004 2004 HOH HOH . E 5 HOH A 5 2005 2005 HOH HOH . E 5 HOH A 6 2006 2006 HOH HOH . E 5 HOH A 7 2007 2007 HOH HOH . E 5 HOH A 8 2008 2008 HOH HOH . E 5 HOH A 9 2009 2009 HOH HOH . E 5 HOH A 10 2010 2010 HOH HOH . E 5 HOH A 11 2011 2011 HOH HOH . E 5 HOH A 12 2012 2012 HOH HOH . E 5 HOH A 13 2013 2013 HOH HOH . E 5 HOH A 14 2014 2014 HOH HOH . E 5 HOH A 15 2015 2015 HOH HOH . E 5 HOH A 16 2016 2016 HOH HOH . E 5 HOH A 17 2017 2017 HOH HOH . E 5 HOH A 18 2018 2018 HOH HOH . E 5 HOH A 19 2019 2019 HOH HOH . E 5 HOH A 20 2020 2020 HOH HOH . E 5 HOH A 21 2021 2021 HOH HOH . E 5 HOH A 22 2022 2022 HOH HOH . E 5 HOH A 23 2023 2023 HOH HOH . E 5 HOH A 24 2024 2024 HOH HOH . E 5 HOH A 25 2025 2025 HOH HOH . E 5 HOH A 26 2026 2026 HOH HOH . E 5 HOH A 27 2027 2027 HOH HOH . E 5 HOH A 28 2028 2028 HOH HOH . E 5 HOH A 29 2029 2029 HOH HOH . E 5 HOH A 30 2030 2030 HOH HOH . E 5 HOH A 31 2031 2031 HOH HOH . E 5 HOH A 32 2032 2032 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . B 2 35.968 -26.751 -34.246 1 31.65 ? PA FAD 700 A 1 HETATM 2 O O1A FAD . . . B 2 36.86 -27.289 -35.292 1 32.7 ? O1A FAD 700 A 1 HETATM 3 O O2A FAD . . . B 2 36.715 -26.329 -32.97 1 33.42 ? O2A FAD 700 A 1 HETATM 4 O O5B FAD . . . B 2 34.783 -27.697 -33.739 1 34.41 ? O5B FAD 700 A 1 HETATM 5 C C5B FAD . . . B 2 33.911 -28.364 -34.608 1 33.51 ? C5B FAD 700 A 1 HETATM 6 C C4B FAD . . . B 2 33.239 -29.417 -33.76 1 30.37 ? C4B FAD 700 A 1 HETATM 7 O O4B FAD . . . B 2 32.205 -30.021 -34.498 1 32.54 ? O4B FAD 700 A 1 HETATM 8 C C3B FAD . . . B 2 34.212 -30.498 -33.391 1 28.91 ? C3B FAD 700 A 1 HETATM 9 O O3B FAD . . . B 2 33.916 -30.84 -32.061 1 27.08 ? O3B FAD 700 A 1 HETATM 10 C C2B FAD . . . B 2 33.849 -31.665 -34.254 1 30.4 ? C2B FAD 700 A 1 HETATM 11 O O2B FAD . . . B 2 34.051 -32.862 -33.533 1 32.1 ? O2B FAD 700 A 1 HETATM 12 C C1B FAD . . . B 2 32.357 -31.435 -34.402 1 33.68 ? C1B FAD 700 A 1 HETATM 13 N N9A FAD . . . B 2 31.779 -32.164 -35.54 1 35.61 ? N9A FAD 700 A 1 HETATM 14 C C8A FAD . . . B 2 32.261 -32.205 -36.832 1 37.13 ? C8A FAD 700 A 1 HETATM 15 N N7A FAD . . . B 2 31.439 -32.979 -37.583 1 38.01 ? N7A FAD 700 A 1 HETATM 16 C C5A FAD . . . B 2 30.445 -33.443 -36.782 1 38.43 ? C5A FAD 700 A 1 HETATM 17 C C6A FAD . . . B 2 29.344 -34.274 -37.023 1 36.64 ? C6A FAD 700 A 1 HETATM 18 N N6A FAD . . . B 2 29.009 -34.663 -38.248 1 37.2 ? N6A FAD 700 A 1 HETATM 19 N N1A FAD . . . B 2 28.492 -34.552 -35.989 1 36.9 ? N1A FAD 700 A 1 HETATM 20 C C2A FAD . . . B 2 28.718 -34.032 -34.726 1 38.84 ? C2A FAD 700 A 1 HETATM 21 N N3A FAD . . . B 2 29.813 -33.217 -34.493 1 39.52 ? N3A FAD 700 A 1 HETATM 22 C C4A FAD . . . B 2 30.656 -32.922 -35.5 1 36.66 ? C4A FAD 700 A 1 HETATM 23 N N1 FAD . . . B 2 42.631 -20.379 -35.115 1 28.11 ? N1 FAD 700 A 1 HETATM 24 C C2 FAD . . . B 2 43.142 -19.146 -34.745 1 27.53 ? C2 FAD 700 A 1 HETATM 25 O O2 FAD . . . B 2 42.599 -18.099 -35.055 1 26.11 ? O2 FAD 700 A 1 HETATM 26 N N3 FAD . . . B 2 44.304 -19.064 -34.033 1 30.47 ? N3 FAD 700 A 1 HETATM 27 C C4 FAD . . . B 2 44.973 -20.207 -33.662 1 30.96 ? C4 FAD 700 A 1 HETATM 28 O O4 FAD . . . B 2 46 -20.128 -33.019 1 33.62 ? O4 FAD 700 A 1 HETATM 29 C C4X FAD . . . B 2 44.476 -21.44 -34.013 1 30.43 ? C4X FAD 700 A 1 HETATM 30 N N5 FAD . . . B 2 45.163 -22.568 -33.609 1 29.57 ? N5 FAD 700 A 1 HETATM 31 C C5X FAD . . . B 2 44.528 -23.786 -33.804 1 30.28 ? C5X FAD 700 A 1 HETATM 32 C C6 FAD . . . B 2 45.171 -24.958 -33.388 1 30.83 ? C6 FAD 700 A 1 HETATM 33 C C7 FAD . . . B 2 44.85 -26.217 -33.93 1 31.01 ? C7 FAD 700 A 1 HETATM 34 C C7M FAD . . . B 2 45.61 -27.437 -33.432 1 27.3 ? C7M FAD 700 A 1 HETATM 35 C C8 FAD . . . B 2 43.849 -26.273 -34.925 1 30.98 ? C8 FAD 700 A 1 HETATM 36 C C8M FAD . . . B 2 43.422 -27.543 -35.603 1 30.67 ? C8M FAD 700 A 1 HETATM 37 C C9 FAD . . . B 2 43.18 -25.108 -35.315 1 31.32 ? C9 FAD 700 A 1 HETATM 38 C C9A FAD . . . B 2 43.504 -23.866 -34.766 1 30.24 ? C9A FAD 700 A 1 HETATM 39 N N10 FAD . . . B 2 42.788 -22.732 -35.122 1 29.59 ? N10 FAD 700 A 1 HETATM 40 C C10 FAD . . . B 2 43.388 -21.511 -34.914 1 29.96 ? C10 FAD 700 A 1 HETATM 41 C C1' FAD . . . B 2 41.705 -22.808 -36.138 1 28.75 ? C1' FAD 700 A 1 HETATM 42 C C2' FAD . . . B 2 40.467 -23.323 -35.43 1 28.73 ? C2' FAD 700 A 1 HETATM 43 O O2' FAD . . . B 2 39.655 -23.898 -36.414 1 31.31 ? O2' FAD 700 A 1 HETATM 44 C C3' FAD . . . B 2 39.669 -22.204 -34.759 1 28.76 ? C3' FAD 700 A 1 HETATM 45 O O3' FAD . . . B 2 40.542 -21.375 -34.023 1 30.58 ? O3' FAD 700 A 1 HETATM 46 C C4' FAD . . . B 2 38.53 -22.696 -33.857 1 27.66 ? C4' FAD 700 A 1 HETATM 47 O O4' FAD . . . B 2 38.993 -23.439 -32.727 1 23.54 ? O4' FAD 700 A 1 HETATM 48 C C5' FAD . . . B 2 37.514 -23.491 -34.684 1 26.15 ? C5' FAD 700 A 1 HETATM 49 O O5' FAD . . . B 2 36.382 -23.722 -33.901 1 25.95 ? O5' FAD 700 A 1 HETATM 50 P P FAD . . . B 2 34.996 -24.085 -34.568 1 26.46 ? P FAD 700 A 1 HETATM 51 O O1P FAD . . . B 2 33.854 -23.904 -33.632 1 25.83 ? O1P FAD 700 A 1 HETATM 52 O O2P FAD . . . B 2 34.909 -23.472 -35.963 1 26.93 ? O2P FAD 700 A 1 HETATM 53 O O3P FAD . . . B 2 35.061 -25.635 -34.921 1 29.78 ? O3P FAD 700 A 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 53 #