data_4C77
#
_model_server_result.job_id            oyxa2I1rtD3Q8_pRMAzJzQ 
_model_server_result.datetime_utc      '2024-11-15 20:23:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4c77 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":701}' 
#
_entry.id    4C77 
#
_exptl.entry_id    4C77 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              739.393 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '3-ACETYLPYRIDINE ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4C77 
_cell.length_a            107.36 
_cell.length_b            107.36 
_cell.length_c            106.79 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4C77 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C22 H26 N6 O17 P3 -3' 
_chem_comp.formula_weight    739.393 
_chem_comp.id                N01 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '3-ACETYLPYRIDINE ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O3 PA N01 sing 328 n n 
O3 PN N01 sing 329 n n 
PA O1A N01 sing 330 n n 
PA O2A N01 doub 331 n n 
PA O5B N01 sing 332 n n 
PN O1N N01 sing 333 n n 
PN O2N N01 doub 334 n n 
PN O5D N01 sing 335 n n 
N1A C2A N01 doub 336 n y 
N1A C6A N01 sing 337 n y 
C1B C2B N01 sing 338 n n 
C1B O4B N01 sing 339 n n 
C1B N9A N01 sing 340 n n 
C1D N1N N01 sing 341 n n 
C1D C2D N01 sing 342 n n 
C1D O4D N01 sing 343 n n 
N1N C2N N01 doub 344 n y 
N1N C6N N01 sing 345 n y 
O1X P2B N01 sing 346 n n 
C2A N3A N01 sing 347 n y 
C2B O2B N01 sing 348 n n 
C2B C3B N01 sing 349 n n 
O2B P2B N01 sing 350 n n 
P2B O2X N01 sing 351 n n 
P2B O3X N01 doub 352 n n 
C2D O2D N01 sing 353 n n 
C2D C3D N01 sing 354 n n 
C2N C3N N01 sing 355 n y 
N3A C4A N01 doub 356 n y 
C3B O3B N01 sing 357 n n 
C3B C4B N01 sing 358 n n 
C3D O3D N01 sing 359 n n 
C3D C4D N01 sing 360 n n 
C3N C4N N01 doub 361 n y 
C3N C7N N01 sing 362 n n 
C4A C5A N01 sing 363 n y 
C4A N9A N01 sing 364 n y 
C4B O4B N01 sing 365 n n 
C4B C5B N01 sing 366 n n 
C4D O4D N01 sing 367 n n 
C4D C5D N01 sing 368 n n 
C4N C5N N01 sing 369 n y 
C5A C6A N01 doub 370 n y 
C5A N7A N01 sing 371 n y 
C5B O5B N01 sing 372 n n 
C5D O5D N01 sing 373 n n 
C5N C6N N01 doub 374 n y 
C6A N6A N01 sing 375 n n 
N7A C8A N01 doub 376 n y 
C7N O7N N01 doub 377 n n 
C7N CAA N01 sing 378 n n 
C8A N9A N01 sing 379 n y 
C1B H1B N01 sing 380 n n 
C1D H1D N01 sing 381 n n 
C2A H2A N01 sing 382 n n 
C2B H2B N01 sing 383 n n 
C2D H2D N01 sing 384 n n 
O2D HO2D N01 sing 385 n n 
C2N H2N N01 sing 386 n n 
C3B H3B N01 sing 387 n n 
O3B HO3B N01 sing 388 n n 
C3D H3D N01 sing 389 n n 
O3D HO3D N01 sing 390 n n 
C4B H4B N01 sing 391 n n 
C4D H4D N01 sing 392 n n 
C4N H4N N01 sing 393 n n 
C5B H5B N01 sing 394 n n 
C5B H5BA N01 sing 395 n n 
C5D H5D N01 sing 396 n n 
C5D H5DA N01 sing 397 n n 
C5N H5N N01 sing 398 n n 
N6A HN6A N01 sing 399 n n 
N6A HN6B N01 sing 400 n n 
C6N H6N N01 sing 401 n n 
C8A H8A N01 sing 402 n n 
CAA HAA N01 sing 403 n n 
CAA HAAA N01 sing 404 n n 
CAA HAAB N01 sing 405 n n 
#
_atom_sites.entry_id                     4C77 
_atom_sites.fract_transf_matrix[1][1]    0.009314 
_atom_sites.fract_transf_matrix[1][2]    0.005378 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010755 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009364 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FAD A 1 700 700 FAD FAD . 
C 3 N01 A 1 701 701 N01 N01 . 
D 4 P6G A 1 1543 1543 P6G P6G . 
E 5 HOH A 1 2001 2001 HOH HOH . 
E 5 HOH A 2 2002 2002 HOH HOH . 
E 5 HOH A 3 2003 2003 HOH HOH . 
E 5 HOH A 4 2004 2004 HOH HOH . 
E 5 HOH A 5 2005 2005 HOH HOH . 
E 5 HOH A 6 2006 2006 HOH HOH . 
E 5 HOH A 7 2007 2007 HOH HOH . 
E 5 HOH A 8 2008 2008 HOH HOH . 
E 5 HOH A 9 2009 2009 HOH HOH . 
E 5 HOH A 10 2010 2010 HOH HOH . 
E 5 HOH A 11 2011 2011 HOH HOH . 
E 5 HOH A 12 2012 2012 HOH HOH . 
E 5 HOH A 13 2013 2013 HOH HOH . 
E 5 HOH A 14 2014 2014 HOH HOH . 
E 5 HOH A 15 2015 2015 HOH HOH . 
E 5 HOH A 16 2016 2016 HOH HOH . 
E 5 HOH A 17 2017 2017 HOH HOH . 
E 5 HOH A 18 2018 2018 HOH HOH . 
E 5 HOH A 19 2019 2019 HOH HOH . 
E 5 HOH A 20 2020 2020 HOH HOH . 
E 5 HOH A 21 2021 2021 HOH HOH . 
E 5 HOH A 22 2022 2022 HOH HOH . 
E 5 HOH A 23 2023 2023 HOH HOH . 
E 5 HOH A 24 2024 2024 HOH HOH . 
E 5 HOH A 25 2025 2025 HOH HOH . 
E 5 HOH A 26 2026 2026 HOH HOH . 
E 5 HOH A 27 2027 2027 HOH HOH . 
E 5 HOH A 28 2028 2028 HOH HOH . 
E 5 HOH A 29 2029 2029 HOH HOH . 
E 5 HOH A 30 2030 2030 HOH HOH . 
E 5 HOH A 31 2031 2031 HOH HOH . 
E 5 HOH A 32 2032 2032 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O3 N01 . . . C 3 48.718 -29.781 -40.825 1 36.04 ? O3 N01 701 A 1 
HETATM 2 P PA N01 . . . C 3 49.298 -29.069 -42.151 1 31.56 ? PA N01 701 A 1 
HETATM 3 P PN N01 . . . C 3 48.988 -29.199 -39.334 1 31.29 ? PN N01 701 A 1 
HETATM 4 N N1A N01 . . . C 3 53.477 -37.549 -47.061 1 54.89 ? N1A N01 701 A 1 
HETATM 5 O O1A N01 . . . C 3 49.62 -27.635 -41.875 1 35.36 ? O1A N01 701 A 1 
HETATM 6 C C1B N01 . . . C 3 52.84 -33.221 -44.299 1 41.17 ? C1B N01 701 A 1 
HETATM 7 C C1D N01 . . . C 3 46.049 -25.15 -37.703 1 41.85 ? C1D N01 701 A 1 
HETATM 8 N N1N N01 . . . C 3 47.002 -25.491 -36.622 1 47.12 ? N1N N01 701 A 1 
HETATM 9 O O1N N01 . . . C 3 50.437 -29.376 -38.795 1 33.37 ? O1N N01 701 A 1 
HETATM 10 O O1X N01 . . . C 3 53.473 -29.379 -46.79 1 37.21 ? O1X N01 701 A 1 
HETATM 11 C C2A N01 . . . C 3 54.4 -36.871 -46.342 1 50.59 ? C2A N01 701 A 1 
HETATM 12 O O2A N01 . . . C 3 48.144 -29.274 -43.257 1 36.94 ? O2A N01 701 A 1 
HETATM 13 C C2B N01 . . . C 3 52.756 -31.89 -45.055 1 38.31 ? C2B N01 701 A 1 
HETATM 14 O O2B N01 . . . C 3 53.902 -31.997 -45.92 1 37.55 ? O2B N01 701 A 1 
HETATM 15 P P2B N01 . . . C 3 53.815 -30.944 -47.157 1 37.42 ? P2B N01 701 A 1 
HETATM 16 C C2D N01 . . . C 3 46.782 -24.139 -38.628 1 38.55 ? C2D N01 701 A 1 
HETATM 17 O O2D N01 . . . C 3 45.746 -23.339 -39.211 1 32.38 ? O2D N01 701 A 1 
HETATM 18 C C2N N01 . . . C 3 47.484 -24.418 -35.944 1 51.04 ? C2N N01 701 A 1 
HETATM 19 O O2N N01 . . . C 3 47.976 -30.132 -38.581 1 34.71 ? O2N N01 701 A 1 
HETATM 20 O O2X N01 . . . C 3 55.065 -31.031 -48.022 1 36.57 ? O2X N01 701 A 1 
HETATM 21 N N3A N01 . . . C 3 54.089 -35.764 -45.672 1 50.05 ? N3A N01 701 A 1 
HETATM 22 C C3B N01 . . . C 3 52.872 -30.946 -43.831 1 34.7 ? C3B N01 701 A 1 
HETATM 23 O O3B N01 . . . C 3 54.216 -31.064 -43.36 1 36.2 ? O3B N01 701 A 1 
HETATM 24 C C3D N01 . . . C 3 47.548 -25.182 -39.503 1 37.7 ? C3D N01 701 A 1 
HETATM 25 O O3D N01 . . . C 3 48.014 -24.623 -40.721 1 39.37 ? O3D N01 701 A 1 
HETATM 26 C C3N N01 . . . C 3 48.396 -24.572 -34.877 1 52.16 ? C3N N01 701 A 1 
HETATM 27 O O3X N01 . . . C 3 52.391 -31.422 -47.782 1 33.67 ? O3X N01 701 A 1 
HETATM 28 C C4A N01 . . . C 3 52.825 -35.301 -45.71 1 48.63 ? C4A N01 701 A 1 
HETATM 29 C C4B N01 . . . C 3 51.983 -31.633 -42.77 1 35.7 ? C4B N01 701 A 1 
HETATM 30 O O4B N01 . . . C 3 52.132 -33.043 -43.035 1 39.9 ? O4B N01 701 A 1 
HETATM 31 C C4D N01 . . . C 3 46.479 -26.288 -39.748 1 38.53 ? C4D N01 701 A 1 
HETATM 32 O O4D N01 . . . C 3 45.704 -26.319 -38.509 1 44.53 ? O4D N01 701 A 1 
HETATM 33 C C4N N01 . . . C 3 48.794 -25.899 -34.549 1 49.45 ? C4N N01 701 A 1 
HETATM 34 C C5A N01 . . . C 3 51.812 -35.965 -46.455 1 50.27 ? C5A N01 701 A 1 
HETATM 35 C C5B N01 . . . C 3 50.476 -31.238 -42.719 1 33.2 ? C5B N01 701 A 1 
HETATM 36 O O5B N01 . . . C 3 50.64 -29.865 -42.427 1 31 ? O5B N01 701 A 1 
HETATM 37 C C5D N01 . . . C 3 47.099 -27.691 -39.951 1 36.94 ? C5D N01 701 A 1 
HETATM 38 O O5D N01 . . . C 3 48.428 -27.707 -39.396 1 37.54 ? O5D N01 701 A 1 
HETATM 39 C C5N N01 . . . C 3 48.283 -26.988 -35.287 1 43.35 ? C5N N01 701 A 1 
HETATM 40 C C6A N01 . . . C 3 52.176 -37.141 -47.154 1 56.89 ? C6A N01 701 A 1 
HETATM 41 N N6A N01 . . . C 3 51.204 -37.829 -47.908 1 53.01 ? N6A N01 701 A 1 
HETATM 42 C C6N N01 . . . C 3 47.372 -26.76 -36.331 1 43.28 ? C6N N01 701 A 1 
HETATM 43 N N7A N01 . . . C 3 50.649 -35.264 -46.328 1 47.6 ? N7A N01 701 A 1 
HETATM 44 C C7N N01 . . . C 3 48.901 -23.357 -34.17 1 53.11 ? C7N N01 701 A 1 
HETATM 45 O O7N N01 . . . C 3 50.243 -23.139 -33.955 1 47.89 ? O7N N01 701 A 1 
HETATM 46 C C8A N01 . . . C 3 50.865 -34.219 -45.572 1 49 ? C8A N01 701 A 1 
HETATM 47 N N9A N01 . . . C 3 52.188 -34.204 -45.173 1 49.06 ? N9A N01 701 A 1 
HETATM 48 C CAA N01 . . . C 3 48.078 -22.507 -33.819 1 51.89 ? CAA N01 701 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           263 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           48 
#