data_4C7A # _model_server_result.job_id luXNiDkw9BkdcEYaYkzoUg _model_server_result.datetime_utc '2024-11-29 22:16:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4c7a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1158}' # _entry.id 4C7A # _exptl.entry_id 4C7A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4C7A _cell.length_a 68.13 _cell.length_b 68.13 _cell.length_c 92.27 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4C7A _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 16 A CYS 42 1_555 A SG CYS 131 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf2 A SG CYS 22 A CYS 48 1_555 A SG CYS 86 A CYS 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 A SG CYS 30 A CYS 56 1_555 A SG CYS 79 A CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf4 A SG CYS 70 A CYS 96 1_555 A SG CYS 106 A CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf5 A SG CYS 99 A CYS 125 1_555 A SG CYS 121 A CYS 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf6 B SG CYS 16 B CYS 42 1_555 B SG CYS 131 B CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf7 B SG CYS 22 B CYS 48 1_555 B SG CYS 86 B CYS 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf8 B SG CYS 30 B CYS 56 1_555 B SG CYS 79 B CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf9 B SG CYS 70 B CYS 96 1_555 B SG CYS 106 B CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf10 B SG CYS 99 B CYS 125 1_555 B SG CYS 121 B CYS 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? covale ? covale1 A C ALA 59 A ALA 85 1_555 A N MSE 60 A MSE 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C MSE 60 A MSE 86 1_555 A N TRP 61 A TRP 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? covale ? covale3 A C TYR 82 A TYR 108 1_555 A N MSE 83 A MSE 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C MSE 83 A MSE 109 1_555 A N PRO 84 A PRO 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale5 B C ALA 59 B ALA 85 1_555 B N MSE 60 B MSE 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale6 B C MSE 60 B MSE 86 1_555 B N TRP 61 B TRP 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale7 B C TYR 82 B TYR 108 1_555 B N MSE 83 B MSE 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale8 B C MSE 83 B MSE 109 1_555 B N PRO 84 B PRO 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? metalc ? metalc1 A NE2 HIS 39 A HIS 65 1_555 C ZN ZN . A ZN 1158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc2 A O LEU 42 A LEU 68 1_555 D NA NA . A NA 1159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? metalc ? metalc3 A O ALA 45 A ALA 71 1_555 D NA NA . A NA 1159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? metalc ? metalc4 A O SER 48 A SER 74 1_555 D NA NA . A NA 1159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc5 C ZN ZN . A ZN 1158 1_555 B NE2 HIS 39 B HIS 65 8_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc6 C ZN ZN . A ZN 1158 1_555 B OE2 GLU 49 B GLU 75 6_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc7 C ZN ZN . A ZN 1158 1_555 B OE1 GLU 49 B GLU 75 6_545 ? ? ? ? ? ? ? ? ? ? ? ? 1.865 ? metalc ? metalc8 B O SER 41 B SER 67 1_555 E NA NA . B NA 1158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.729 ? metalc ? metalc9 B O LEU 42 B LEU 68 1_555 F NA NA . B NA 1159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc10 B O ALA 45 B ALA 71 1_555 F NA NA . B NA 1159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc11 B O SER 48 B SER 74 1_555 F NA NA . B NA 1159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc12 B O VAL 81 B VAL 107 1_555 E NA NA . B NA 1158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc13 F NA NA . B NA 1159 1_555 H O HOH . B HOH 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc14 F NA NA . B NA 1159 1_555 H O HOH . B HOH 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4C7A _atom_sites.fract_transf_matrix[1][1] 0.014678 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014678 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010838 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 1158 1158 ZN ZN . D 3 NA A 1 1159 1159 NA NA . E 3 NA B 1 1158 1158 NA NA . F 3 NA B 1 1159 1159 NA NA . G 4 HOH A 1 2001 2001 HOH HOH . G 4 HOH A 2 2002 2002 HOH HOH . G 4 HOH A 3 2003 2003 HOH HOH . G 4 HOH A 4 2004 2004 HOH HOH . G 4 HOH A 5 2005 2005 HOH HOH . G 4 HOH A 6 2006 2006 HOH HOH . G 4 HOH A 7 2007 2007 HOH HOH . G 4 HOH A 8 2008 2008 HOH HOH . G 4 HOH A 9 2009 2009 HOH HOH . G 4 HOH A 10 2010 2010 HOH HOH . G 4 HOH A 11 2011 2011 HOH HOH . G 4 HOH A 12 2012 2012 HOH HOH . G 4 HOH A 13 2013 2013 HOH HOH . G 4 HOH A 14 2014 2014 HOH HOH . G 4 HOH A 15 2015 2015 HOH HOH . G 4 HOH A 16 2016 2016 HOH HOH . H 4 HOH B 1 2001 2001 HOH HOH . H 4 HOH B 2 2002 2002 HOH HOH . H 4 HOH B 3 2003 2003 HOH HOH . H 4 HOH B 4 2004 2004 HOH HOH . H 4 HOH B 5 2005 2005 HOH HOH . H 4 HOH B 6 2006 2006 HOH HOH . H 4 HOH B 7 2007 2007 HOH HOH . H 4 HOH B 8 2008 2008 HOH HOH . H 4 HOH B 9 2009 2009 HOH HOH . H 4 HOH B 10 2010 2010 HOH HOH . H 4 HOH B 11 2011 2011 HOH HOH . H 4 HOH B 12 2012 2012 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x -24.772 _atom_site.Cartn_y -4.633 _atom_site.Cartn_z 34.768 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 40.28 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 1158 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 386 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #