data_4C7R
#
_model_server_result.job_id            NaFdlXCOtI7bm7nT6H3ivg 
_model_server_result.datetime_utc      '2024-11-28 17:00:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4c7r 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"T","auth_seq_id":1566}' 
#
_entry.id    4C7R 
#
_exptl.entry_id    4C7R 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              751.023 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE' 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4C7R 
_cell.length_a            115.56 
_cell.length_b            129.5 
_cell.length_c            167.95 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4C7R 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
? 4 M N N 
? 4 S N N 
? 4 T N N 
? 4 U N N 
#
_chem_comp.formula           'C40 H79 O10 P' 
_chem_comp.formula_weight    751.023 
_chem_comp.id                PGT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'PHOSPHATIDYLGLYCEROL;1-PALMITOYL-2-OLEOYL-SN-GLYCERO-3-[PHOSPHO-RAC-(1-GLYCEROL)](SODIUM SALT)' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C48 C47 PGT sing 348 n n 
C48 H481 PGT sing 349 n n 
C48 H482 PGT sing 350 n n 
C48 H483 PGT sing 351 n n 
C47 C46 PGT sing 352 n n 
C47 H471 PGT sing 353 n n 
C47 H472 PGT sing 354 n n 
C46 C45 PGT sing 355 n n 
C46 H461 PGT sing 356 n n 
C46 H462 PGT sing 357 n n 
C45 C44 PGT sing 358 n n 
C45 H451 PGT sing 359 n n 
C45 H452 PGT sing 360 n n 
C44 C43 PGT sing 361 n n 
C44 H441 PGT sing 362 n n 
C44 H442 PGT sing 363 n n 
C43 C42 PGT sing 364 n n 
C43 H431 PGT sing 365 n n 
C43 H432 PGT sing 366 n n 
C42 C41 PGT sing 367 n n 
C42 H421 PGT sing 368 n n 
C42 H422 PGT sing 369 n n 
C41 C40 PGT sing 370 n n 
C41 H411 PGT sing 371 n n 
C41 H412 PGT sing 372 n n 
C40 C39 PGT sing 373 n n 
C40 H401 PGT sing 374 n n 
C40 H402 PGT sing 375 n n 
C39 C38 PGT sing 376 n n 
C39 H391 PGT sing 377 n n 
C39 H392 PGT sing 378 n n 
C38 C37 PGT sing 379 n n 
C38 H381 PGT sing 380 n n 
C38 H382 PGT sing 381 n n 
C37 C36 PGT sing 382 n n 
C37 H371 PGT sing 383 n n 
C37 H372 PGT sing 384 n n 
C36 C35 PGT sing 385 n n 
C36 H361 PGT sing 386 n n 
C36 H362 PGT sing 387 n n 
C35 C34 PGT sing 388 n n 
C35 H351 PGT sing 389 n n 
C35 H352 PGT sing 390 n n 
C34 C33 PGT sing 391 n n 
C34 H341 PGT sing 392 n n 
C34 H342 PGT sing 393 n n 
C33 C32 PGT sing 394 n n 
C33 H331 PGT sing 395 n n 
C33 H332 PGT sing 396 n n 
C32 C31 PGT sing 397 n n 
C32 H321 PGT sing 398 n n 
C32 H322 PGT sing 399 n n 
C31 O31 PGT doub 400 n n 
C31 O2 PGT sing 401 n n 
O2 C2 PGT sing 402 n n 
C2 C1 PGT sing 403 n n 
C2 C3 PGT sing 404 n n 
C2 H2 PGT sing 405 n n 
C1 O3P PGT sing 406 n n 
C1 H11 PGT sing 407 n n 
C1 H12 PGT sing 408 n n 
O3P P PGT sing 409 n n 
P O1P PGT doub 410 n n 
P O2P PGT sing 411 n n 
P O4P PGT sing 412 n n 
O2P HO2P PGT sing 413 n n 
O4P C4 PGT sing 414 n n 
C4 C5 PGT sing 415 n n 
C4 H41 PGT sing 416 n n 
C4 H42 PGT sing 417 n n 
C5 O5 PGT sing 418 n n 
C5 C6 PGT sing 419 n n 
C5 H5 PGT sing 420 n n 
O5 HO5 PGT sing 421 n n 
C6 O6 PGT sing 422 n n 
C6 H61 PGT sing 423 n n 
C6 H62 PGT sing 424 n n 
O6 HO6 PGT sing 425 n n 
C3 O3 PGT sing 426 n n 
C3 H31 PGT sing 427 n n 
C3 H32 PGT sing 428 n n 
O3 C11 PGT sing 429 n n 
C11 O11 PGT doub 430 n n 
C11 C12 PGT sing 431 n n 
C12 C13 PGT sing 432 n n 
C12 H121 PGT sing 433 n n 
C12 H122 PGT sing 434 n n 
C13 C14 PGT sing 435 n n 
C13 H131 PGT sing 436 n n 
C13 H132 PGT sing 437 n n 
C14 C15 PGT sing 438 n n 
C14 H141 PGT sing 439 n n 
C14 H142 PGT sing 440 n n 
C15 C16 PGT sing 441 n n 
C15 H151 PGT sing 442 n n 
C15 H152 PGT sing 443 n n 
C16 C17 PGT sing 444 n n 
C16 H161 PGT sing 445 n n 
C16 H162 PGT sing 446 n n 
C17 C18 PGT sing 447 n n 
C17 H171 PGT sing 448 n n 
C17 H172 PGT sing 449 n n 
C18 C19 PGT sing 450 n n 
C18 H181 PGT sing 451 n n 
C18 H182 PGT sing 452 n n 
C19 C20 PGT sing 453 n n 
C19 H191 PGT sing 454 n n 
C19 H192 PGT sing 455 n n 
C20 C21 PGT sing 456 n n 
C20 H201 PGT sing 457 n n 
C20 H202 PGT sing 458 n n 
C21 C22 PGT sing 459 n n 
C21 H211 PGT sing 460 n n 
C21 H212 PGT sing 461 n n 
C22 C23 PGT sing 462 n n 
C22 H221 PGT sing 463 n n 
C22 H222 PGT sing 464 n n 
C23 C24 PGT sing 465 n n 
C23 H231 PGT sing 466 n n 
C23 H232 PGT sing 467 n n 
C24 C25 PGT sing 468 n n 
C24 H241 PGT sing 469 n n 
C24 H242 PGT sing 470 n n 
C25 C26 PGT sing 471 n n 
C25 H251 PGT sing 472 n n 
C25 H252 PGT sing 473 n n 
C26 H261 PGT sing 474 n n 
C26 H262 PGT sing 475 n n 
C26 H263 PGT sing 476 n n 
#
_atom_sites.entry_id                     4C7R 
_atom_sites.fract_transf_matrix[1][1]    0.008654 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007722 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005954 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 FLC A 1 1001 1001 FLC FLC . 
E 3 CL A 1 1587 1587 CL CL . 
F 4 PGT A 1 1588 1588 PGT PGT . 
G 4 PGT A 1 1589 1589 PGT PGT . 
H 4 PGT A 1 1590 1590 PGT PGT . 
I 4 PGT A 1 1591 1591 PGT PGT . 
J 4 PGT A 1 1592 1592 PGT PGT . 
K 2 FLC B 1 1001 1001 FLC FLC . 
L 3 CL B 1 1553 1553 CL CL . 
M 4 PGT B 1 1554 1554 PGT PGT . 
N 5 PEG B 1 1555 1555 PEG PEG . 
O 2 FLC C 1 1001 1001 FLC FLC . 
P 3 CL C 1 1562 1562 CL CL . 
Q 3 CL C 1 1563 1563 CL CL . 
R 3 CL C 1 1564 1564 CL CL . 
S 4 PGT C 1 1565 1565 PGT PGT . 
T 4 PGT C 1 1566 1566 PGT PGT . 
U 4 PGT C 1 1567 1567 PGT PGT . 
V 6 CM5 C 1 1568 1568 CM5 CM5 . 
W 2 FLC C 1 1569 1569 FLC FLC . 
X 7 HOH A 1 2001 2001 HOH HOH . 
X 7 HOH A 2 2002 2002 HOH HOH . 
X 7 HOH A 3 2003 2003 HOH HOH . 
X 7 HOH A 4 2004 2004 HOH HOH . 
X 7 HOH A 5 2005 2005 HOH HOH . 
X 7 HOH A 6 2006 2006 HOH HOH . 
X 7 HOH A 7 2007 2007 HOH HOH . 
X 7 HOH A 8 2008 2008 HOH HOH . 
X 7 HOH A 9 2009 2009 HOH HOH . 
X 7 HOH A 10 2010 2010 HOH HOH . 
X 7 HOH A 11 2011 2011 HOH HOH . 
X 7 HOH A 12 2012 2012 HOH HOH . 
X 7 HOH A 13 2013 2013 HOH HOH . 
Y 7 HOH B 1 2001 2001 HOH HOH . 
Y 7 HOH B 2 2002 2002 HOH HOH . 
Y 7 HOH B 3 2003 2003 HOH HOH . 
Y 7 HOH B 4 2004 2004 HOH HOH . 
Y 7 HOH B 5 2005 2005 HOH HOH . 
Y 7 HOH B 6 2006 2006 HOH HOH . 
Y 7 HOH B 7 2007 2007 HOH HOH . 
Y 7 HOH B 8 2008 2008 HOH HOH . 
Y 7 HOH B 9 2009 2009 HOH HOH . 
Y 7 HOH B 10 2010 2010 HOH HOH . 
Y 7 HOH B 11 2011 2011 HOH HOH . 
Y 7 HOH B 12 2012 2012 HOH HOH . 
Y 7 HOH B 13 2013 2013 HOH HOH . 
Y 7 HOH B 14 2014 2014 HOH HOH . 
Y 7 HOH B 15 2015 2015 HOH HOH . 
Y 7 HOH B 16 2016 2016 HOH HOH . 
Y 7 HOH B 17 2017 2017 HOH HOH . 
Y 7 HOH B 18 2018 2018 HOH HOH . 
Y 7 HOH B 19 2019 2019 HOH HOH . 
Y 7 HOH B 20 2020 2020 HOH HOH . 
Y 7 HOH B 21 2021 2021 HOH HOH . 
Y 7 HOH B 22 2022 2022 HOH HOH . 
Y 7 HOH B 23 2023 2023 HOH HOH . 
Z 7 HOH C 1 2001 2001 HOH HOH . 
Z 7 HOH C 2 2002 2002 HOH HOH . 
Z 7 HOH C 3 2003 2003 HOH HOH . 
Z 7 HOH C 4 2004 2004 HOH HOH . 
Z 7 HOH C 5 2005 2005 HOH HOH . 
Z 7 HOH C 6 2006 2006 HOH HOH . 
Z 7 HOH C 7 2007 2007 HOH HOH . 
Z 7 HOH C 8 2008 2008 HOH HOH . 
Z 7 HOH C 9 2009 2009 HOH HOH . 
Z 7 HOH C 10 2010 2010 HOH HOH . 
Z 7 HOH C 11 2011 2011 HOH HOH . 
Z 7 HOH C 12 2012 2012 HOH HOH . 
Z 7 HOH C 13 2013 2013 HOH HOH . 
Z 7 HOH C 14 2014 2014 HOH HOH . 
Z 7 HOH C 15 2015 2015 HOH HOH . 
Z 7 HOH C 16 2016 2016 HOH HOH . 
Z 7 HOH C 17 2017 2017 HOH HOH . 
Z 7 HOH C 18 2018 2018 HOH HOH . 
Z 7 HOH C 19 2019 2019 HOH HOH . 
Z 7 HOH C 20 2020 2020 HOH HOH . 
Z 7 HOH C 21 2021 2021 HOH HOH . 
Z 7 HOH C 22 2022 2022 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C48 PGT . . . T 4 15.052 9.499 -18.117 1 119.96 ? C48 PGT 1566 C 1 
HETATM 2 C C47 PGT . . . T 4 14.871 10.88 -18.711 1 121.89 ? C47 PGT 1566 C 1 
HETATM 3 C C46 PGT . . . T 4 13.553 11.497 -18.255 1 119.8 ? C46 PGT 1566 C 1 
HETATM 4 C C45 PGT . . . T 4 12.387 10.593 -18.637 1 121.47 ? C45 PGT 1566 C 1 
HETATM 5 C C44 PGT . . . T 4 11.385 10.501 -17.495 1 124.48 ? C44 PGT 1566 C 1 
HETATM 6 C C43 PGT . . . T 4 12.004 9.815 -16.281 1 125.85 ? C43 PGT 1566 C 1 
HETATM 7 C C42 PGT . . . T 4 11.148 10.018 -15.033 1 125.49 ? C42 PGT 1566 C 1 
HETATM 8 C C41 PGT . . . T 4 11.66 9.161 -13.881 1 125.94 ? C41 PGT 1566 C 1 
HETATM 9 C C40 PGT . . . T 4 10.774 9.298 -12.652 1 123.92 ? C40 PGT 1566 C 1 
HETATM 10 C C39 PGT . . . T 4 11.1 10.568 -11.88 1 126.43 ? C39 PGT 1566 C 1 
HETATM 11 C C38 PGT . . . T 4 10.075 10.796 -10.774 1 130.16 ? C38 PGT 1566 C 1 
HETATM 12 C C37 PGT . . . T 4 10.475 11.948 -9.856 1 122.22 ? C37 PGT 1566 C 1 
HETATM 13 C C36 PGT . . . T 4 9.274 12.477 -9.08 1 110.22 ? C36 PGT 1566 C 1 
HETATM 14 C C35 PGT . . . T 4 9.688 13.399 -7.94 1 109.18 ? C35 PGT 1566 C 1 
HETATM 15 C C34 PGT . . . T 4 10.451 14.623 -8.431 1 115.09 ? C34 PGT 1566 C 1 
HETATM 16 C C33 PGT . . . T 4 11.954 14.368 -8.455 1 126.09 ? C33 PGT 1566 C 1 
HETATM 17 C C32 PGT . . . T 4 12.75 15.664 -8.353 1 139.64 ? C32 PGT 1566 C 1 
HETATM 18 C C31 PGT . . . T 4 12.524 16.286 -6.994 1 152.34 ? C31 PGT 1566 C 1 
HETATM 19 O O31 PGT . . . T 4 12.029 15.631 -6.09 1 157.89 ? O31 PGT 1566 C 1 
HETATM 20 O O2 PGT . . . T 4 12.89 17.671 -6.74 1 155.11 ? O2 PGT 1566 C 1 
HETATM 21 C C2 PGT . . . T 4 14.193 17.966 -7.235 1 155.85 ? C2 PGT 1566 C 1 
HETATM 22 C C1 PGT . . . T 4 15.199 17.053 -6.542 1 155.47 ? C1 PGT 1566 C 1 
HETATM 23 O O3P PGT . . . T 4 16.054 16.48 -7.528 1 152.28 ? O3P PGT 1566 C 1 
HETATM 24 P P PGT . . . T 4 17.609 16.234 -7.204 1 221.63 ? P PGT 1566 C 1 
HETATM 25 O O1P PGT . . . T 4 18.009 14.899 -7.788 1 220.71 ? O1P PGT 1566 C 1 
HETATM 26 O O2P PGT . . . T 4 17.862 16.54 -5.746 1 223.49 ? O2P PGT 1566 C 1 
HETATM 27 O O4P PGT . . . T 4 18.243 17.405 -8.107 1 150.5 ? O4P PGT 1566 C 1 
HETATM 28 C C4 PGT . . . T 4 18.131 18.753 -7.652 1 147.1 ? C4 PGT 1566 C 1 
HETATM 29 C C5 PGT . . . T 4 18.306 19.727 -8.813 1 138.42 ? C5 PGT 1566 C 1 
HETATM 30 O O5 PGT . . . T 4 17.762 19.17 -10.018 1 130.54 ? O5 PGT 1566 C 1 
HETATM 31 C C6 PGT . . . T 4 19.795 19.989 -8.991 1 134.7 ? C6 PGT 1566 C 1 
HETATM 32 O O6 PGT . . . T 4 20.34 20.413 -7.737 1 131.44 ? O6 PGT 1566 C 1 
HETATM 33 C C3 PGT . . . T 4 14.521 19.425 -6.939 1 158.32 ? C3 PGT 1566 C 1 
HETATM 34 O O3 PGT . . . T 4 14.288 19.663 -5.554 1 164.17 ? O3 PGT 1566 C 1 
HETATM 35 C C11 PGT . . . T 4 14.007 21.003 -5.068 1 170.88 ? C11 PGT 1566 C 1 
HETATM 36 O O11 PGT . . . T 4 14.411 21.97 -5.696 1 170.51 ? O11 PGT 1566 C 1 
HETATM 37 C C12 PGT . . . T 4 13.219 21.171 -3.79 1 175.77 ? C12 PGT 1566 C 1 
HETATM 38 C C13 PGT . . . T 4 12.02 20.229 -3.84 1 177.18 ? C13 PGT 1566 C 1 
HETATM 39 C C14 PGT . . . T 4 11.385 20.055 -2.466 1 180.81 ? C14 PGT 1566 C 1 
HETATM 40 C C15 PGT . . . T 4 10.47 18.833 -2.436 1 181.94 ? C15 PGT 1566 C 1 
HETATM 41 C C16 PGT . . . T 4 10.094 18.465 -1.003 1 184.62 ? C16 PGT 1566 C 1 
HETATM 42 C C17 PGT . . . T 4 9.231 17.207 -0.963 1 180.9 ? C17 PGT 1566 C 1 
HETATM 43 C C18 PGT . . . T 4 9.1 16.651 0.453 1 177.02 ? C18 PGT 1566 C 1 
HETATM 44 C C19 PGT . . . T 4 8.265 17.563 1.348 1 169.37 ? C19 PGT 1566 C 1 
HETATM 45 C C20 PGT . . . T 4 7.99 16.911 2.701 1 161.52 ? C20 PGT 1566 C 1 
HETATM 46 C C21 PGT . . . T 4 6.501 16.665 2.925 1 153.75 ? C21 PGT 1566 C 1 
HETATM 47 C C22 PGT . . . T 4 5.947 15.616 1.966 1 148.1 ? C22 PGT 1566 C 1 
HETATM 48 C C23 PGT . . . T 4 4.525 15.221 2.349 1 144.06 ? C23 PGT 1566 C 1 
HETATM 49 C C24 PGT . . . T 4 3.953 14.199 1.369 1 140.39 ? C24 PGT 1566 C 1 
HETATM 50 C C25 PGT . . . T 4 2.702 13.533 1.936 1 139.94 ? C25 PGT 1566 C 1 
HETATM 51 C C26 PGT . . . T 4 2.16 12.484 0.988 1 133.34 ? C26 PGT 1566 C 1 
#
_model_server_stats.io_time_ms              42 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           363 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           51 
#