data_4C7R # _model_server_result.job_id mfh_jk9hHvtlSlNPKZTm-Q _model_server_result.datetime_utc '2024-11-24 23:30:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4c7r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":1568}' # _entry.id 4C7R # _exptl.entry_id 4C7R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 494.573 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-CYCLOHEXYL-1-PENTYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4C7R _cell.length_a 115.56 _cell.length_b 129.5 _cell.length_c 167.95 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4C7R _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id V _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H42 O11' _chem_comp.formula_weight 494.573 _chem_comp.id CM5 _chem_comp.mon_nstd_flag . _chem_comp.name 5-CYCLOHEXYL-1-PENTYL-BETA-D-MALTOSIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '5-CYCLOHEXYLPENTYL 4-O-ALPHA-D-GLUCOPYRANOSYL-BETA-D-GLUCOPYRANOSIDE;CYMAL-5' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 C8 CM5 sing 70 n n C7 C6 CM5 sing 71 n n C7 H71 CM5 sing 72 n n C7 H72 CM5 sing 73 n n C8 C9 CM5 sing 74 n n C8 H81 CM5 sing 75 n n C8 H82 CM5 sing 76 n n C9 C10 CM5 sing 77 n n C9 H91 CM5 sing 78 n n C9 H92 CM5 sing 79 n n C10 C11 CM5 sing 80 n n C10 H101 CM5 sing 81 n n C10 H102 CM5 sing 82 n n C11 C6 CM5 sing 83 n n C11 H111 CM5 sing 84 n n C11 H112 CM5 sing 85 n n C6 C5 CM5 sing 86 n n C6 H6 CM5 sing 87 n n C5 C4 CM5 sing 88 n n C5 H51 CM5 sing 89 n n C5 H52 CM5 sing 90 n n C4 C3 CM5 sing 91 n n C4 H41 CM5 sing 92 n n C4 H42 CM5 sing 93 n n C3 C2 CM5 sing 94 n n C3 H31A CM5 sing 95 n n C3 H32A CM5 sing 96 n n C2 C1 CM5 sing 97 n n C2 H21A CM5 sing 98 n n C2 H22A CM5 sing 99 n n C1 O12 CM5 sing 100 n n C1 H11 CM5 sing 101 n n C1 H12 CM5 sing 102 n n O12 C13 CM5 sing 103 n n C13 C18 CM5 sing 104 n n C13 O14 CM5 sing 105 n n C13 H13 CM5 sing 106 n n C18 O22 CM5 sing 107 n n C18 C17 CM5 sing 108 n n C18 H18 CM5 sing 109 n n O22 H22 CM5 sing 110 n n C17 O21 CM5 sing 111 n n C17 C16 CM5 sing 112 n n C17 H17 CM5 sing 113 n n O21 H21 CM5 sing 114 n n O14 C15 CM5 sing 115 n n C15 C19 CM5 sing 116 n n C15 C16 CM5 sing 117 n n C15 H15 CM5 sing 118 n n C19 O20 CM5 sing 119 n n C19 H191 CM5 sing 120 n n C19 H192 CM5 sing 121 n n O20 H20 CM5 sing 122 n n C16 O23 CM5 sing 123 n n C16 H16 CM5 sing 124 n n O23 C24 CM5 sing 125 n n C24 O25 CM5 sing 126 n n C24 C29 CM5 sing 127 n n C24 H24 CM5 sing 128 n n O25 C26 CM5 sing 129 n n C26 C30 CM5 sing 130 n n C26 C27 CM5 sing 131 n n C26 H26 CM5 sing 132 n n C30 O31 CM5 sing 133 n n C30 H301 CM5 sing 134 n n C30 H302 CM5 sing 135 n n O31 H31 CM5 sing 136 n n C27 O32 CM5 sing 137 n n C27 C28 CM5 sing 138 n n C27 H27 CM5 sing 139 n n O32 H32 CM5 sing 140 n n C28 O33 CM5 sing 141 n n C28 C29 CM5 sing 142 n n C28 H28 CM5 sing 143 n n O33 H33 CM5 sing 144 n n C29 O34 CM5 sing 145 n n C29 H29 CM5 sing 146 n n O34 H34 CM5 sing 147 n n # _atom_sites.entry_id 4C7R _atom_sites.fract_transf_matrix[1][1] 0.008654 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007722 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005954 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 FLC A 1 1001 1001 FLC FLC . E 3 CL A 1 1587 1587 CL CL . F 4 PGT A 1 1588 1588 PGT PGT . G 4 PGT A 1 1589 1589 PGT PGT . H 4 PGT A 1 1590 1590 PGT PGT . I 4 PGT A 1 1591 1591 PGT PGT . J 4 PGT A 1 1592 1592 PGT PGT . K 2 FLC B 1 1001 1001 FLC FLC . L 3 CL B 1 1553 1553 CL CL . M 4 PGT B 1 1554 1554 PGT PGT . N 5 PEG B 1 1555 1555 PEG PEG . O 2 FLC C 1 1001 1001 FLC FLC . P 3 CL C 1 1562 1562 CL CL . Q 3 CL C 1 1563 1563 CL CL . R 3 CL C 1 1564 1564 CL CL . S 4 PGT C 1 1565 1565 PGT PGT . T 4 PGT C 1 1566 1566 PGT PGT . U 4 PGT C 1 1567 1567 PGT PGT . V 6 CM5 C 1 1568 1568 CM5 CM5 . W 2 FLC C 1 1569 1569 FLC FLC . X 7 HOH A 1 2001 2001 HOH HOH . X 7 HOH A 2 2002 2002 HOH HOH . X 7 HOH A 3 2003 2003 HOH HOH . X 7 HOH A 4 2004 2004 HOH HOH . X 7 HOH A 5 2005 2005 HOH HOH . X 7 HOH A 6 2006 2006 HOH HOH . X 7 HOH A 7 2007 2007 HOH HOH . X 7 HOH A 8 2008 2008 HOH HOH . X 7 HOH A 9 2009 2009 HOH HOH . X 7 HOH A 10 2010 2010 HOH HOH . X 7 HOH A 11 2011 2011 HOH HOH . X 7 HOH A 12 2012 2012 HOH HOH . X 7 HOH A 13 2013 2013 HOH HOH . Y 7 HOH B 1 2001 2001 HOH HOH . Y 7 HOH B 2 2002 2002 HOH HOH . Y 7 HOH B 3 2003 2003 HOH HOH . Y 7 HOH B 4 2004 2004 HOH HOH . Y 7 HOH B 5 2005 2005 HOH HOH . Y 7 HOH B 6 2006 2006 HOH HOH . Y 7 HOH B 7 2007 2007 HOH HOH . Y 7 HOH B 8 2008 2008 HOH HOH . Y 7 HOH B 9 2009 2009 HOH HOH . Y 7 HOH B 10 2010 2010 HOH HOH . Y 7 HOH B 11 2011 2011 HOH HOH . Y 7 HOH B 12 2012 2012 HOH HOH . Y 7 HOH B 13 2013 2013 HOH HOH . Y 7 HOH B 14 2014 2014 HOH HOH . Y 7 HOH B 15 2015 2015 HOH HOH . Y 7 HOH B 16 2016 2016 HOH HOH . Y 7 HOH B 17 2017 2017 HOH HOH . Y 7 HOH B 18 2018 2018 HOH HOH . Y 7 HOH B 19 2019 2019 HOH HOH . Y 7 HOH B 20 2020 2020 HOH HOH . Y 7 HOH B 21 2021 2021 HOH HOH . Y 7 HOH B 22 2022 2022 HOH HOH . Y 7 HOH B 23 2023 2023 HOH HOH . Z 7 HOH C 1 2001 2001 HOH HOH . Z 7 HOH C 2 2002 2002 HOH HOH . Z 7 HOH C 3 2003 2003 HOH HOH . Z 7 HOH C 4 2004 2004 HOH HOH . Z 7 HOH C 5 2005 2005 HOH HOH . Z 7 HOH C 6 2006 2006 HOH HOH . Z 7 HOH C 7 2007 2007 HOH HOH . Z 7 HOH C 8 2008 2008 HOH HOH . Z 7 HOH C 9 2009 2009 HOH HOH . Z 7 HOH C 10 2010 2010 HOH HOH . Z 7 HOH C 11 2011 2011 HOH HOH . Z 7 HOH C 12 2012 2012 HOH HOH . Z 7 HOH C 13 2013 2013 HOH HOH . Z 7 HOH C 14 2014 2014 HOH HOH . Z 7 HOH C 15 2015 2015 HOH HOH . Z 7 HOH C 16 2016 2016 HOH HOH . Z 7 HOH C 17 2017 2017 HOH HOH . Z 7 HOH C 18 2018 2018 HOH HOH . Z 7 HOH C 19 2019 2019 HOH HOH . Z 7 HOH C 20 2020 2020 HOH HOH . Z 7 HOH C 21 2021 2021 HOH HOH . Z 7 HOH C 22 2022 2022 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 CM5 . . . V 6 9.536 8.519 -61.743 1 119.21 ? C7 CM5 1568 C 1 HETATM 2 C C8 CM5 . . . V 6 10.143 8.948 -60.412 1 121.25 ? C8 CM5 1568 C 1 HETATM 3 C C9 CM5 . . . V 6 9.672 10.345 -60.035 1 120.89 ? C9 CM5 1568 C 1 HETATM 4 C C10 CM5 . . . V 6 8.153 10.358 -59.934 1 118.03 ? C10 CM5 1568 C 1 HETATM 5 C C11 CM5 . . . V 6 7.52 9.928 -61.252 1 115.75 ? C11 CM5 1568 C 1 HETATM 6 C C6 CM5 . . . V 6 8.013 8.563 -61.718 1 112.83 ? C6 CM5 1568 C 1 HETATM 7 C C5 CM5 . . . V 6 7.511 8.333 -63.133 1 113.54 ? C5 CM5 1568 C 1 HETATM 8 C C4 CM5 . . . V 6 6.007 8.098 -63.162 1 118.33 ? C4 CM5 1568 C 1 HETATM 9 C C3 CM5 . . . V 6 5.532 7.971 -64.605 1 127.19 ? C3 CM5 1568 C 1 HETATM 10 C C2 CM5 . . . V 6 4.337 7.035 -64.73 1 134.43 ? C2 CM5 1568 C 1 HETATM 11 C C1 CM5 . . . V 6 4.298 6.434 -66.129 1 143.13 ? C1 CM5 1568 C 1 HETATM 12 O O12 CM5 . . . V 6 5.587 6.605 -66.71 1 154.64 ? O12 CM5 1568 C 1 HETATM 13 C C13 CM5 . . . V 6 5.963 5.521 -67.554 1 168.17 ? C13 CM5 1568 C 1 HETATM 14 C C18 CM5 . . . V 6 5.271 5.69 -68.901 1 175.4 ? C18 CM5 1568 C 1 HETATM 15 O O22 CM5 . . . V 6 4.058 4.927 -68.899 1 174.91 ? O22 CM5 1568 C 1 HETATM 16 C C17 CM5 . . . V 6 6.157 5.219 -70.048 1 183.67 ? C17 CM5 1568 C 1 HETATM 17 O O21 CM5 . . . V 6 6.944 6.315 -70.528 1 183.21 ? O21 CM5 1568 C 1 HETATM 18 O O14 CM5 . . . V 6 7.38 5.569 -67.706 1 174.99 ? O14 CM5 1568 C 1 HETATM 19 C C15 CM5 . . . V 6 7.934 4.468 -68.432 1 182.41 ? C15 CM5 1568 C 1 HETATM 20 C C19 CM5 . . . V 6 9.357 4.8 -68.875 1 182.63 ? C19 CM5 1568 C 1 HETATM 21 O O20 CM5 . . . V 6 9.343 5.815 -69.886 1 183.14 ? O20 CM5 1568 C 1 HETATM 22 C C16 CM5 . . . V 6 7.053 4.065 -69.611 1 189.98 ? C16 CM5 1568 C 1 HETATM 23 O O23 CM5 . . . V 6 6.23 2.956 -69.25 1 199.09 ? O23 CM5 1568 C 1 HETATM 24 C C24 CM5 . . . V 6 6.297 1.928 -70.239 1 206.91 ? C24 CM5 1568 C 1 HETATM 25 O O25 CM5 . . . V 6 7.153 0.883 -69.759 1 208.65 ? O25 CM5 1568 C 1 HETATM 26 C C26 CM5 . . . V 6 6.602 -0.431 -69.861 1 209.03 ? C26 CM5 1568 C 1 HETATM 27 C C30 CM5 . . . V 6 7.647 -1.465 -69.456 1 207.83 ? C30 CM5 1568 C 1 HETATM 28 O O31 CM5 . . . V 6 7.016 -2.733 -69.237 1 205.64 ? O31 CM5 1568 C 1 HETATM 29 C C27 CM5 . . . V 6 6.113 -0.648 -71.287 1 211.18 ? C27 CM5 1568 C 1 HETATM 30 O O32 CM5 . . . V 6 5.717 -2.012 -71.474 1 211.31 ? O32 CM5 1568 C 1 HETATM 31 C C28 CM5 . . . V 6 4.937 0.276 -71.573 1 209.84 ? C28 CM5 1568 C 1 HETATM 32 O O33 CM5 . . . V 6 5.06 0.813 -72.895 1 209.75 ? O33 CM5 1568 C 1 HETATM 33 C C29 CM5 . . . V 6 4.891 1.42 -70.564 1 208.33 ? C29 CM5 1568 C 1 HETATM 34 O O34 CM5 . . . V 6 4.217 1.018 -69.363 1 207.06 ? O34 CM5 1568 C 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 34 #