data_4C7R # _model_server_result.job_id 0_0rwl9qzAxvZvarZagDNA _model_server_result.datetime_utc '2024-11-24 23:40:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4c7r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1590}' # _entry.id 4C7R # _exptl.entry_id 4C7R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 751.023 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE' _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4C7R _cell.length_a 115.56 _cell.length_b 129.5 _cell.length_c 167.95 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4C7R _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 M N N ? 4 S N N ? 4 T N N ? 4 U N N # _chem_comp.formula 'C40 H79 O10 P' _chem_comp.formula_weight 751.023 _chem_comp.id PGT _chem_comp.mon_nstd_flag . _chem_comp.name '(1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'PHOSPHATIDYLGLYCEROL;1-PALMITOYL-2-OLEOYL-SN-GLYCERO-3-[PHOSPHO-RAC-(1-GLYCEROL)](SODIUM SALT)' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C48 C47 PGT sing 348 n n C48 H481 PGT sing 349 n n C48 H482 PGT sing 350 n n C48 H483 PGT sing 351 n n C47 C46 PGT sing 352 n n C47 H471 PGT sing 353 n n C47 H472 PGT sing 354 n n C46 C45 PGT sing 355 n n C46 H461 PGT sing 356 n n C46 H462 PGT sing 357 n n C45 C44 PGT sing 358 n n C45 H451 PGT sing 359 n n C45 H452 PGT sing 360 n n C44 C43 PGT sing 361 n n C44 H441 PGT sing 362 n n C44 H442 PGT sing 363 n n C43 C42 PGT sing 364 n n C43 H431 PGT sing 365 n n C43 H432 PGT sing 366 n n C42 C41 PGT sing 367 n n C42 H421 PGT sing 368 n n C42 H422 PGT sing 369 n n C41 C40 PGT sing 370 n n C41 H411 PGT sing 371 n n C41 H412 PGT sing 372 n n C40 C39 PGT sing 373 n n C40 H401 PGT sing 374 n n C40 H402 PGT sing 375 n n C39 C38 PGT sing 376 n n C39 H391 PGT sing 377 n n C39 H392 PGT sing 378 n n C38 C37 PGT sing 379 n n C38 H381 PGT sing 380 n n C38 H382 PGT sing 381 n n C37 C36 PGT sing 382 n n C37 H371 PGT sing 383 n n C37 H372 PGT sing 384 n n C36 C35 PGT sing 385 n n C36 H361 PGT sing 386 n n C36 H362 PGT sing 387 n n C35 C34 PGT sing 388 n n C35 H351 PGT sing 389 n n C35 H352 PGT sing 390 n n C34 C33 PGT sing 391 n n C34 H341 PGT sing 392 n n C34 H342 PGT sing 393 n n C33 C32 PGT sing 394 n n C33 H331 PGT sing 395 n n C33 H332 PGT sing 396 n n C32 C31 PGT sing 397 n n C32 H321 PGT sing 398 n n C32 H322 PGT sing 399 n n C31 O31 PGT doub 400 n n C31 O2 PGT sing 401 n n O2 C2 PGT sing 402 n n C2 C1 PGT sing 403 n n C2 C3 PGT sing 404 n n C2 H2 PGT sing 405 n n C1 O3P PGT sing 406 n n C1 H11 PGT sing 407 n n C1 H12 PGT sing 408 n n O3P P PGT sing 409 n n P O1P PGT doub 410 n n P O2P PGT sing 411 n n P O4P PGT sing 412 n n O2P HO2P PGT sing 413 n n O4P C4 PGT sing 414 n n C4 C5 PGT sing 415 n n C4 H41 PGT sing 416 n n C4 H42 PGT sing 417 n n C5 O5 PGT sing 418 n n C5 C6 PGT sing 419 n n C5 H5 PGT sing 420 n n O5 HO5 PGT sing 421 n n C6 O6 PGT sing 422 n n C6 H61 PGT sing 423 n n C6 H62 PGT sing 424 n n O6 HO6 PGT sing 425 n n C3 O3 PGT sing 426 n n C3 H31 PGT sing 427 n n C3 H32 PGT sing 428 n n O3 C11 PGT sing 429 n n C11 O11 PGT doub 430 n n C11 C12 PGT sing 431 n n C12 C13 PGT sing 432 n n C12 H121 PGT sing 433 n n C12 H122 PGT sing 434 n n C13 C14 PGT sing 435 n n C13 H131 PGT sing 436 n n C13 H132 PGT sing 437 n n C14 C15 PGT sing 438 n n C14 H141 PGT sing 439 n n C14 H142 PGT sing 440 n n C15 C16 PGT sing 441 n n C15 H151 PGT sing 442 n n C15 H152 PGT sing 443 n n C16 C17 PGT sing 444 n n C16 H161 PGT sing 445 n n C16 H162 PGT sing 446 n n C17 C18 PGT sing 447 n n C17 H171 PGT sing 448 n n C17 H172 PGT sing 449 n n C18 C19 PGT sing 450 n n C18 H181 PGT sing 451 n n C18 H182 PGT sing 452 n n C19 C20 PGT sing 453 n n C19 H191 PGT sing 454 n n C19 H192 PGT sing 455 n n C20 C21 PGT sing 456 n n C20 H201 PGT sing 457 n n C20 H202 PGT sing 458 n n C21 C22 PGT sing 459 n n C21 H211 PGT sing 460 n n C21 H212 PGT sing 461 n n C22 C23 PGT sing 462 n n C22 H221 PGT sing 463 n n C22 H222 PGT sing 464 n n C23 C24 PGT sing 465 n n C23 H231 PGT sing 466 n n C23 H232 PGT sing 467 n n C24 C25 PGT sing 468 n n C24 H241 PGT sing 469 n n C24 H242 PGT sing 470 n n C25 C26 PGT sing 471 n n C25 H251 PGT sing 472 n n C25 H252 PGT sing 473 n n C26 H261 PGT sing 474 n n C26 H262 PGT sing 475 n n C26 H263 PGT sing 476 n n # _atom_sites.entry_id 4C7R _atom_sites.fract_transf_matrix[1][1] 0.008654 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007722 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005954 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 FLC A 1 1001 1001 FLC FLC . E 3 CL A 1 1587 1587 CL CL . F 4 PGT A 1 1588 1588 PGT PGT . G 4 PGT A 1 1589 1589 PGT PGT . H 4 PGT A 1 1590 1590 PGT PGT . I 4 PGT A 1 1591 1591 PGT PGT . J 4 PGT A 1 1592 1592 PGT PGT . K 2 FLC B 1 1001 1001 FLC FLC . L 3 CL B 1 1553 1553 CL CL . M 4 PGT B 1 1554 1554 PGT PGT . N 5 PEG B 1 1555 1555 PEG PEG . O 2 FLC C 1 1001 1001 FLC FLC . P 3 CL C 1 1562 1562 CL CL . Q 3 CL C 1 1563 1563 CL CL . R 3 CL C 1 1564 1564 CL CL . S 4 PGT C 1 1565 1565 PGT PGT . T 4 PGT C 1 1566 1566 PGT PGT . U 4 PGT C 1 1567 1567 PGT PGT . V 6 CM5 C 1 1568 1568 CM5 CM5 . W 2 FLC C 1 1569 1569 FLC FLC . X 7 HOH A 1 2001 2001 HOH HOH . X 7 HOH A 2 2002 2002 HOH HOH . X 7 HOH A 3 2003 2003 HOH HOH . X 7 HOH A 4 2004 2004 HOH HOH . X 7 HOH A 5 2005 2005 HOH HOH . X 7 HOH A 6 2006 2006 HOH HOH . X 7 HOH A 7 2007 2007 HOH HOH . X 7 HOH A 8 2008 2008 HOH HOH . X 7 HOH A 9 2009 2009 HOH HOH . X 7 HOH A 10 2010 2010 HOH HOH . X 7 HOH A 11 2011 2011 HOH HOH . X 7 HOH A 12 2012 2012 HOH HOH . X 7 HOH A 13 2013 2013 HOH HOH . Y 7 HOH B 1 2001 2001 HOH HOH . Y 7 HOH B 2 2002 2002 HOH HOH . Y 7 HOH B 3 2003 2003 HOH HOH . Y 7 HOH B 4 2004 2004 HOH HOH . Y 7 HOH B 5 2005 2005 HOH HOH . Y 7 HOH B 6 2006 2006 HOH HOH . Y 7 HOH B 7 2007 2007 HOH HOH . Y 7 HOH B 8 2008 2008 HOH HOH . Y 7 HOH B 9 2009 2009 HOH HOH . Y 7 HOH B 10 2010 2010 HOH HOH . Y 7 HOH B 11 2011 2011 HOH HOH . Y 7 HOH B 12 2012 2012 HOH HOH . Y 7 HOH B 13 2013 2013 HOH HOH . Y 7 HOH B 14 2014 2014 HOH HOH . Y 7 HOH B 15 2015 2015 HOH HOH . Y 7 HOH B 16 2016 2016 HOH HOH . Y 7 HOH B 17 2017 2017 HOH HOH . Y 7 HOH B 18 2018 2018 HOH HOH . Y 7 HOH B 19 2019 2019 HOH HOH . Y 7 HOH B 20 2020 2020 HOH HOH . Y 7 HOH B 21 2021 2021 HOH HOH . Y 7 HOH B 22 2022 2022 HOH HOH . Y 7 HOH B 23 2023 2023 HOH HOH . Z 7 HOH C 1 2001 2001 HOH HOH . Z 7 HOH C 2 2002 2002 HOH HOH . Z 7 HOH C 3 2003 2003 HOH HOH . Z 7 HOH C 4 2004 2004 HOH HOH . Z 7 HOH C 5 2005 2005 HOH HOH . Z 7 HOH C 6 2006 2006 HOH HOH . Z 7 HOH C 7 2007 2007 HOH HOH . Z 7 HOH C 8 2008 2008 HOH HOH . Z 7 HOH C 9 2009 2009 HOH HOH . Z 7 HOH C 10 2010 2010 HOH HOH . Z 7 HOH C 11 2011 2011 HOH HOH . Z 7 HOH C 12 2012 2012 HOH HOH . Z 7 HOH C 13 2013 2013 HOH HOH . Z 7 HOH C 14 2014 2014 HOH HOH . Z 7 HOH C 15 2015 2015 HOH HOH . Z 7 HOH C 16 2016 2016 HOH HOH . Z 7 HOH C 17 2017 2017 HOH HOH . Z 7 HOH C 18 2018 2018 HOH HOH . Z 7 HOH C 19 2019 2019 HOH HOH . Z 7 HOH C 20 2020 2020 HOH HOH . Z 7 HOH C 21 2021 2021 HOH HOH . Z 7 HOH C 22 2022 2022 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C48 PGT . . . H 4 6.277 5.531 -26.726 1 104.77 ? C48 PGT 1590 A 1 HETATM 2 C C47 PGT . . . H 4 7.701 5.548 -26.214 1 107.83 ? C47 PGT 1590 A 1 HETATM 3 C C46 PGT . . . H 4 8.077 4.22 -25.565 1 105.78 ? C46 PGT 1590 A 1 HETATM 4 C C45 PGT . . . H 4 7.638 3.047 -26.433 1 109.1 ? C45 PGT 1590 A 1 HETATM 5 C C44 PGT . . . H 4 6.614 2.179 -25.71 1 110.71 ? C44 PGT 1590 A 1 HETATM 6 C C43 PGT . . . H 4 6.053 1.083 -26.614 1 118.56 ? C43 PGT 1590 A 1 HETATM 7 C C42 PGT . . . H 4 4.903 1.587 -27.489 1 121.6 ? C42 PGT 1590 A 1 HETATM 8 C C41 PGT . . . H 4 5.355 1.962 -28.9 1 116.83 ? C41 PGT 1590 A 1 HETATM 9 C C40 PGT . . . H 4 5.47 0.752 -29.825 1 100.64 ? C40 PGT 1590 A 1 HETATM 10 C C39 PGT . . . H 4 4.126 0.374 -30.439 1 89.71 ? C39 PGT 1590 A 1 HETATM 11 C C38 PGT . . . H 4 4.295 -0.79 -31.413 1 91.11 ? C38 PGT 1590 A 1 HETATM 12 C C37 PGT . . . H 4 3.012 -1.602 -31.583 1 89 ? C37 PGT 1590 A 1 HETATM 13 C C36 PGT . . . H 4 1.821 -0.725 -31.962 1 90.53 ? C36 PGT 1590 A 1 HETATM 14 C C35 PGT . . . H 4 0.555 -1.553 -32.168 1 88.82 ? C35 PGT 1590 A 1 HETATM 15 C C34 PGT . . . H 4 0.626 -2.344 -33.47 1 92.48 ? C34 PGT 1590 A 1 HETATM 16 C C33 PGT . . . H 4 -0.649 -3.131 -33.766 1 87.43 ? C33 PGT 1590 A 1 HETATM 17 C C32 PGT . . . H 4 -0.837 -3.216 -35.277 1 89.77 ? C32 PGT 1590 A 1 HETATM 18 C C31 PGT . . . H 4 -1.308 -4.582 -35.73 1 89.32 ? C31 PGT 1590 A 1 HETATM 19 O O31 PGT . . . H 4 -0.53 -5.516 -35.875 1 82.76 ? O31 PGT 1590 A 1 HETATM 20 O O2 PGT . . . H 4 -2.715 -4.788 -36.022 1 96.61 ? O2 PGT 1590 A 1 HETATM 21 C C2 PGT . . . H 4 -3.239 -5.768 -35.136 1 117.18 ? C2 PGT 1590 A 1 HETATM 22 C C1 PGT . . . H 4 -3.64 -6.985 -35.957 1 128.09 ? C1 PGT 1590 A 1 HETATM 23 O O3P PGT . . . H 4 -2.495 -7.443 -36.674 1 130.35 ? O3P PGT 1590 A 1 HETATM 24 P P PGT . . . H 4 -1.398 -8.317 -35.887 1 230.88 ? P PGT 1590 A 1 HETATM 25 O O1P PGT . . . H 4 -0.125 -8.316 -36.697 1 229.08 ? O1P PGT 1590 A 1 HETATM 26 O O2P PGT . . . H 4 -1.355 -7.889 -34.44 1 231.47 ? O2P PGT 1590 A 1 HETATM 27 O O4P PGT . . . H 4 -2.043 -9.789 -35.95 1 99.45 ? O4P PGT 1590 A 1 HETATM 28 C C4 PGT . . . H 4 -2.199 -10.524 -34.74 1 96.11 ? C4 PGT 1590 A 1 HETATM 29 C C5 PGT . . . H 4 -0.987 -11.439 -34.593 1 96.67 ? C5 PGT 1590 A 1 HETATM 30 O O5 PGT . . . H 4 0.201 -10.639 -34.727 1 84.88 ? O5 PGT 1590 A 1 HETATM 31 C C6 PGT . . . H 4 -1.026 -12.571 -35.629 1 80.77 ? C6 PGT 1590 A 1 HETATM 32 O O6 PGT . . . H 4 -1.988 -12.296 -36.663 1 72.28 ? O6 PGT 1590 A 1 HETATM 33 C C3 PGT . . . H 4 -4.432 -5.233 -34.355 1 124.32 ? C3 PGT 1590 A 1 HETATM 34 O O3 PGT . . . H 4 -4.616 -6.03 -33.184 1 128.79 ? O3 PGT 1590 A 1 HETATM 35 C C11 PGT . . . H 4 -3.594 -6.036 -32.143 1 129.4 ? C11 PGT 1590 A 1 HETATM 36 O O11 PGT . . . H 4 -2.531 -6.606 -32.341 1 126.27 ? O11 PGT 1590 A 1 HETATM 37 C C12 PGT . . . H 4 -3.845 -5.361 -30.817 1 127.18 ? C12 PGT 1590 A 1 HETATM 38 C C13 PGT . . . H 4 -2.694 -5.686 -29.872 1 127.71 ? C13 PGT 1590 A 1 HETATM 39 C C14 PGT . . . H 4 -3.007 -6.906 -29.012 1 128.06 ? C14 PGT 1590 A 1 HETATM 40 C C15 PGT . . . H 4 -3.328 -6.51 -27.572 1 126.12 ? C15 PGT 1590 A 1 HETATM 41 C C16 PGT . . . H 4 -4.333 -5.361 -27.519 1 124.27 ? C16 PGT 1590 A 1 HETATM 42 C C17 PGT . . . H 4 -3.937 -4.322 -26.474 1 112.77 ? C17 PGT 1590 A 1 HETATM 43 C C18 PGT . . . H 4 -4.832 -3.091 -26.547 1 99.57 ? C18 PGT 1590 A 1 HETATM 44 C C19 PGT . . . H 4 -4.497 -2.129 -25.414 1 98.37 ? C19 PGT 1590 A 1 HETATM 45 C C20 PGT . . . H 4 -4.781 -0.69 -25.826 1 97.82 ? C20 PGT 1590 A 1 HETATM 46 C C21 PGT . . . H 4 -4.249 0.3 -24.796 1 97.77 ? C21 PGT 1590 A 1 HETATM 47 C C22 PGT . . . H 4 -3.771 1.581 -25.472 1 94.43 ? C22 PGT 1590 A 1 HETATM 48 C C23 PGT . . . H 4 -3.417 2.655 -24.448 1 90.91 ? C23 PGT 1590 A 1 HETATM 49 C C24 PGT . . . H 4 -2.683 3.829 -25.095 1 80.73 ? C24 PGT 1590 A 1 HETATM 50 C C25 PGT . . . H 4 -3.534 5.094 -25.099 1 73.38 ? C25 PGT 1590 A 1 HETATM 51 C C26 PGT . . . H 4 -2.658 6.328 -25.178 1 74.24 ? C26 PGT 1590 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 51 #