data_4C8B
#
_model_server_result.job_id            t2SIbj2uWMLcLBI5qWi9OA 
_model_server_result.datetime_utc      '2024-12-23 06:59:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4c8b 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1000}' 
#
_entry.id    4C8B 
#
_exptl.entry_id    4C8B 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              532.559 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '3-(imidazo[1,2-b]pyridazin-3-ylethynyl)-4-methyl-N-{4-[(4-methylpiperazin-1-yl)methyl]-3-(trifluoromethyl)phenyl}benzam ide' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4C8B 
_cell.length_a            58.735 
_cell.length_b            86.682 
_cell.length_c            137.335 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4C8B 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C29 H27 F3 N6 O' 
_chem_comp.formula_weight    532.559 
_chem_comp.id                0LI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '3-(imidazo[1,2-b]pyridazin-3-ylethynyl)-4-methyl-N-{4-[(4-methylpiperazin-1-yl)methyl]-3-(trifluoromethyl)phenyl}benzam ide' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     Ponatinib 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C84 0LI doub 1 n y 
N1 C1 0LI sing 2 n y 
N3 C20 0LI sing 3 n n 
N3 C21 0LI sing 4 n n 
N3 C24 0LI sing 5 n n 
C4 C5 0LI sing 6 n n 
C4 C3 0LI trip 7 n n 
C5 C6 0LI doub 8 n y 
C5 C10 0LI sing 9 n y 
C6 C7 0LI sing 10 n y 
C6 C11 0LI sing 11 n n 
C7 C8 0LI doub 12 n y 
C7 H7 0LI sing 13 n n 
C8 C9 0LI sing 14 n y 
C8 H8 0LI sing 15 n n 
C10 C9 0LI doub 16 n y 
C10 H10 0LI sing 17 n n 
C13 N2 0LI sing 18 n n 
C13 C14 0LI doub 19 n y 
C13 C18 0LI sing 20 n y 
C15 C14 0LI sing 21 n y 
C15 C16 0LI doub 22 n y 
C15 H15 0LI sing 23 n n 
C17 C16 0LI sing 24 n y 
C17 C18 0LI doub 25 n y 
C17 C19 0LI sing 26 n n 
C20 C16 0LI sing 27 n n 
C20 H20 0LI sing 28 n n 
C20 H20A 0LI sing 29 n n 
C21 C22 0LI sing 30 n n 
C21 H21 0LI sing 31 n n 
C21 H21A 0LI sing 32 n n 
C22 N4 0LI sing 33 n n 
C22 H22 0LI sing 34 n n 
C22 H22A 0LI sing 35 n n 
C24 C23 0LI sing 36 n n 
C24 H24 0LI sing 37 n n 
C24 H24A 0LI sing 38 n n 
C81 C82 0LI doub 39 n y 
C81 C84 0LI sing 40 n y 
C81 H81 0LI sing 41 n n 
C82 C83 0LI sing 42 n y 
C82 H82 0LI sing 43 n n 
C83 N81 0LI doub 44 n y 
C83 H83 0LI sing 45 n n 
N81 N82 0LI sing 46 n y 
N82 C84 0LI sing 47 n y 
N82 C2 0LI sing 48 n y 
C1 C2 0LI doub 49 n y 
C1 H1 0LI sing 50 n n 
C2 C3 0LI sing 51 n n 
C9 C12 0LI sing 52 n n 
C11 H11 0LI sing 53 n n 
C11 H11A 0LI sing 54 n n 
C11 H11B 0LI sing 55 n n 
C12 O1 0LI doub 56 n n 
C12 N2 0LI sing 57 n n 
N2 HN2 0LI sing 58 n n 
C14 H14 0LI sing 59 n n 
C18 H18 0LI sing 60 n n 
C19 F1 0LI sing 61 n n 
C19 F2 0LI sing 62 n n 
C19 F3 0LI sing 63 n n 
C23 N4 0LI sing 64 n n 
C23 H23 0LI sing 65 n n 
C23 H23A 0LI sing 66 n n 
C25 N4 0LI sing 67 n n 
C25 H25 0LI sing 68 n n 
C25 H25A 0LI sing 69 n n 
C25 H25B 0LI sing 70 n n 
#
_atom_sites.entry_id                     4C8B 
_atom_sites.fract_transf_matrix[1][1]    0.017026 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011536 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007281 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 0LI A 1 1000 1000 0LI 0LI . 
D 3 EDO A 1 1317 1317 EDO EDO . 
E 2 0LI B 1 1000 1000 0LI 0LI . 
F 4 HOH A 1 2001 2001 HOH HOH . 
F 4 HOH A 2 2002 2002 HOH HOH . 
F 4 HOH A 3 2003 2003 HOH HOH . 
F 4 HOH A 4 2004 2004 HOH HOH . 
F 4 HOH A 5 2005 2005 HOH HOH . 
F 4 HOH A 6 2006 2006 HOH HOH . 
F 4 HOH A 7 2007 2007 HOH HOH . 
F 4 HOH A 8 2008 2008 HOH HOH . 
F 4 HOH A 9 2009 2009 HOH HOH . 
F 4 HOH A 10 2010 2010 HOH HOH . 
F 4 HOH A 11 2011 2011 HOH HOH . 
F 4 HOH A 12 2012 2012 HOH HOH . 
F 4 HOH A 13 2013 2013 HOH HOH . 
F 4 HOH A 14 2014 2014 HOH HOH . 
F 4 HOH A 15 2015 2015 HOH HOH . 
F 4 HOH A 16 2016 2016 HOH HOH . 
F 4 HOH A 17 2017 2017 HOH HOH . 
F 4 HOH A 18 2018 2018 HOH HOH . 
F 4 HOH A 19 2019 2019 HOH HOH . 
F 4 HOH A 20 2020 2020 HOH HOH . 
F 4 HOH A 21 2021 2021 HOH HOH . 
F 4 HOH A 22 2022 2022 HOH HOH . 
F 4 HOH A 23 2023 2023 HOH HOH . 
F 4 HOH A 24 2024 2024 HOH HOH . 
F 4 HOH A 25 2025 2025 HOH HOH . 
F 4 HOH A 26 2026 2026 HOH HOH . 
F 4 HOH A 27 2027 2027 HOH HOH . 
F 4 HOH A 28 2028 2028 HOH HOH . 
G 4 HOH B 1 2001 2001 HOH HOH . 
G 4 HOH B 2 2002 2002 HOH HOH . 
G 4 HOH B 3 2003 2003 HOH HOH . 
G 4 HOH B 4 2004 2004 HOH HOH . 
G 4 HOH B 5 2005 2005 HOH HOH . 
G 4 HOH B 6 2006 2006 HOH HOH . 
G 4 HOH B 7 2007 2007 HOH HOH . 
G 4 HOH B 8 2008 2008 HOH HOH . 
G 4 HOH B 9 2009 2009 HOH HOH . 
G 4 HOH B 10 2010 2010 HOH HOH . 
G 4 HOH B 11 2011 2011 HOH HOH . 
G 4 HOH B 12 2012 2012 HOH HOH . 
G 4 HOH B 13 2013 2013 HOH HOH . 
G 4 HOH B 14 2014 2014 HOH HOH . 
G 4 HOH B 15 2015 2015 HOH HOH . 
G 4 HOH B 16 2016 2016 HOH HOH . 
G 4 HOH B 17 2017 2017 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 0LI . . . E 2 22.565 2.939 20.677 1 44.48 ? N1 0LI 1000 B 1 
HETATM 2 N N3 0LI . . . E 2 7.066 5.506 24.688 1 52.43 ? N3 0LI 1000 B 1 
HETATM 3 C C4 0LI . . . E 2 18.605 1.677 23.027 1 46.96 ? C4 0LI 1000 B 1 
HETATM 4 C C5 0LI . . . E 2 17.254 1.181 23.45 1 44.55 ? C5 0LI 1000 B 1 
HETATM 5 C C6 0LI . . . E 2 17.074 -0.155 23.707 1 43.93 ? C6 0LI 1000 B 1 
HETATM 6 C C7 0LI . . . E 2 15.803 -0.607 24.054 1 43.04 ? C7 0LI 1000 B 1 
HETATM 7 C C8 0LI . . . E 2 14.722 0.293 24.123 1 42.76 ? C8 0LI 1000 B 1 
HETATM 8 C C10 0LI . . . E 2 16.18 2.097 23.502 1 44.37 ? C10 0LI 1000 B 1 
HETATM 9 C C13 0LI . . . E 2 11.26 2.979 23.993 1 47.66 ? C13 0LI 1000 B 1 
HETATM 10 C C15 0LI . . . E 2 9.03 3.654 24.577 1 54.31 ? C15 0LI 1000 B 1 
HETATM 11 C C17 0LI . . . E 2 10.113 4.683 22.703 1 48.46 ? C17 0LI 1000 B 1 
HETATM 12 C C20 0LI . . . E 2 7.727 5.388 23.372 1 52.54 ? C20 0LI 1000 B 1 
HETATM 13 C C21 0LI . . . E 2 7.671 6.531 25.545 1 52.91 ? C21 0LI 1000 B 1 
HETATM 14 C C22 0LI . . . E 2 6.916 6.622 26.861 1 52.35 ? C22 0LI 1000 B 1 
HETATM 15 C C24 0LI . . . E 2 5.638 5.331 24.681 1 53.91 ? C24 0LI 1000 B 1 
HETATM 16 C C81 0LI . . . E 2 24.023 4.328 22.225 1 55.33 ? C81 0LI 1000 B 1 
HETATM 17 C C82 0LI . . . E 2 24.059 4.85 23.502 1 59.08 ? C82 0LI 1000 B 1 
HETATM 18 C C83 0LI . . . E 2 23.02 4.634 24.368 1 59.9 ? C83 0LI 1000 B 1 
HETATM 19 N N81 0LI . . . E 2 21.945 3.9 24.022 1 52.69 ? N81 0LI 1000 B 1 
HETATM 20 N N82 0LI . . . E 2 21.893 3.367 22.776 1 50.18 ? N82 0LI 1000 B 1 
HETATM 21 C C84 0LI . . . E 2 22.898 3.561 21.843 1 50 ? C84 0LI 1000 B 1 
HETATM 22 C C1 0LI . . . E 2 21.377 2.348 20.836 1 43.42 ? C1 0LI 1000 B 1 
HETATM 23 C C2 0LI . . . E 2 20.94 2.599 22.157 1 46.08 ? C2 0LI 1000 B 1 
HETATM 24 C C3 0LI . . . E 2 19.635 2.116 22.652 1 45.25 ? C3 0LI 1000 B 1 
HETATM 25 C C9 0LI . . . E 2 14.917 1.637 23.888 1 43.76 ? C9 0LI 1000 B 1 
HETATM 26 C C11 0LI . . . E 2 18.21 -1.116 23.618 1 43.95 ? C11 0LI 1000 B 1 
HETATM 27 C C12 0LI . . . E 2 13.784 2.626 23.864 1 46.64 ? C12 0LI 1000 B 1 
HETATM 28 O O1 0LI . . . E 2 14.031 3.783 23.524 1 49.79 ? O1 0LI 1000 B 1 
HETATM 29 N N2 0LI . . . E 2 12.426 2.165 24.102 1 45.82 ? N2 0LI 1000 B 1 
HETATM 30 C C14 0LI . . . E 2 10.153 2.853 24.789 1 52.6 ? C14 0LI 1000 B 1 
HETATM 31 C C16 0LI . . . E 2 9.018 4.569 23.535 1 52.12 ? C16 0LI 1000 B 1 
HETATM 32 C C18 0LI . . . E 2 11.238 3.882 22.923 1 48.55 ? C18 0LI 1000 B 1 
HETATM 33 C C19 0LI . . . E 2 10.107 5.675 21.586 1 47.02 ? C19 0LI 1000 B 1 
HETATM 34 F F1 0LI . . . E 2 9.07 5.473 20.754 1 45.05 ? F1 0LI 1000 B 1 
HETATM 35 F F2 0LI . . . E 2 11.262 5.593 20.934 1 47.96 ? F2 0LI 1000 B 1 
HETATM 36 F F3 0LI . . . E 2 10.021 6.881 22.142 1 45.77 ? F3 0LI 1000 B 1 
HETATM 37 C C23 0LI . . . E 2 4.937 6.484 25.347 1 53.43 ? C23 0LI 1000 B 1 
HETATM 38 C C25 0LI . . . E 2 4.652 7.267 27.703 1 62.49 ? C25 0LI 1000 B 1 
HETATM 39 N N4 0LI . . . E 2 5.481 6.668 26.662 1 53.39 ? N4 0LI 1000 B 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           217 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           39 
#