data_4C9G # _model_server_result.job_id sY_eHi_ASMP-bYAdTJ-E-A _model_server_result.datetime_utc '2024-11-23 21:30:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4c9g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4C9G # _exptl.entry_id 4C9G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 770.816 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Carboxyatractyloside _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4C9G _cell.length_a 66.9 _cell.length_b 105.67 _cell.length_c 98.61 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4C9G _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C31 H46 O18 S2' _chem_comp.formula_weight 770.816 _chem_comp.id CXT _chem_comp.mon_nstd_flag . _chem_comp.name Carboxyatractyloside _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 CXT sing 376 n n O2 C1 CXT sing 377 n n C1 C2 CXT sing 378 n n C1 H1 CXT sing 379 n n O1 C5 CXT sing 380 n n O4 S1 CXT sing 381 n n S1 O7 CXT doub 382 n n S1 O6 CXT doub 383 n n S1 O8 CXT sing 384 n n C2 C3 CXT sing 385 n n C2 O3 CXT sing 386 n n C2 H2 CXT sing 387 n n O2 C22 CXT sing 388 n n O11 S2 CXT doub 389 n n O9 S2 CXT doub 390 n n S2 O5 CXT sing 391 n n S2 O10 CXT sing 392 n n C4 C3 CXT sing 393 n n C3 O4 CXT sing 394 n n C3 H3 CXT sing 395 n n O3 C7 CXT sing 396 n n C5 C4 CXT sing 397 n n C4 O5 CXT sing 398 n n C4 H4 CXT sing 399 n n C6 C5 CXT sing 400 n n C5 H5 CXT sing 401 n n O12 C6 CXT sing 402 n n C6 H6 CXT sing 403 n n C6 H6A CXT sing 404 n n O13 C7 CXT doub 405 n n C7 C8 CXT sing 406 n n C9 C8 CXT sing 407 n n C8 H8 CXT sing 408 n n C8 H8A CXT sing 409 n n O8 HO8 CXT sing 410 n n C11 C9 CXT sing 411 n n C9 C10 CXT sing 412 n n C9 H9 CXT sing 413 n n C10 H10 CXT sing 414 n n C10 H10A CXT sing 415 n n C10 H10B CXT sing 416 n n O10 HO10 CXT sing 417 n n C11 H11 CXT sing 418 n n C11 H11A CXT sing 419 n n C11 H11B CXT sing 420 n n O12 HO12 CXT sing 421 n n C30 C21 CXT sing 422 n n C21 C22 CXT sing 423 n n C21 H21 CXT sing 424 n n C21 H21A CXT sing 425 n n C35 O21 CXT sing 426 n n O21 HO21 CXT sing 427 n n C22 C23 CXT sing 428 n n C22 H22 CXT sing 429 n n C37 O22 CXT sing 430 n n O22 HO22 CXT sing 431 n n C23 C24 CXT sing 432 n n C23 H23 CXT sing 433 n n C23 H23A CXT sing 434 n n O23 C37 CXT doub 435 n n C25 C24 CXT sing 436 n n C24 C37 CXT sing 437 n n C24 C38 CXT sing 438 n n C38 O24 CXT sing 439 n n O24 HO24 CXT sing 440 n n C30 C25 CXT sing 441 n n C25 C26 CXT sing 442 n n C25 H25 CXT sing 443 n n C38 O25 CXT doub 444 n n C27 C26 CXT sing 445 n n C26 H26 CXT sing 446 n n C26 H26A CXT sing 447 n n C28 C27 CXT sing 448 n n C27 H27 CXT sing 449 n n C27 H27A CXT sing 450 n n C34 C28 CXT sing 451 n n C35 C28 CXT sing 452 n n C29 C28 CXT sing 453 n n C31 C29 CXT sing 454 n n C29 C30 CXT sing 455 n n C29 H29 CXT sing 456 n n C39 C30 CXT sing 457 n n C32 C31 CXT sing 458 n n C31 H31 CXT sing 459 n n C31 H31A CXT sing 460 n n C32 C33 CXT sing 461 n n C32 H32 CXT sing 462 n n C32 H32A CXT sing 463 n n C33 C36 CXT sing 464 n n C33 C34 CXT sing 465 n n C33 H33 CXT sing 466 n n C34 H34 CXT sing 467 n n C34 H34A CXT sing 468 n n C36 C35 CXT sing 469 n n C35 H35 CXT sing 470 n n C40 C36 CXT doub 471 n n C39 H39 CXT sing 472 n n C39 H39A CXT sing 473 n n C39 H39B CXT sing 474 n n C40 H40 CXT sing 475 n n C40 H40A CXT sing 476 n n # _atom_sites.entry_id 4C9G _atom_sites.fract_transf_matrix[1][1] 0.014948 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009463 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010141 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CXT A 1 401 401 CXT CXT . C 3 CDL A 1 800 800 CDL CDL . D 3 CDL A 1 801 801 CDL CDL . E 3 CDL A 1 802 802 CDL CDL . F 4 BNG A 1 1310 1310 BNG BNG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CXT . . . B 2 20.184 30.401 -15.386 1 59.97 ? C1 CXT 401 A 1 HETATM 2 O O1 CXT . . . B 2 19.793 31.361 -16.363 1 62.05 ? O1 CXT 401 A 1 HETATM 3 S S1 CXT . . . B 2 22.401 33.204 -11.983 1 77.42 ? S1 CXT 401 A 1 HETATM 4 C C2 CXT . . . B 2 21.378 30.909 -14.6 1 62.09 ? C2 CXT 401 A 1 HETATM 5 O O2 CXT . . . B 2 20.606 29.217 -16.048 1 62.06 ? O2 CXT 401 A 1 HETATM 6 S S2 CXT . . . B 2 20.782 35.788 -14.589 1 66.13 ? S2 CXT 401 A 1 HETATM 7 C C3 CXT . . . B 2 21.099 32.277 -13.992 1 66.97 ? C3 CXT 401 A 1 HETATM 8 O O3 CXT . . . B 2 21.646 29.96 -13.574 1 62.02 ? O3 CXT 401 A 1 HETATM 9 C C4 CXT . . . B 2 20.555 33.244 -15.033 1 66.76 ? C4 CXT 401 A 1 HETATM 10 O O4 CXT . . . B 2 22.304 32.824 -13.464 1 72.5 ? O4 CXT 401 A 1 HETATM 11 C C5 CXT . . . B 2 19.396 32.614 -15.804 1 66.22 ? C5 CXT 401 A 1 HETATM 12 O O5 CXT . . . B 2 20.126 34.417 -14.342 1 69.58 ? O5 CXT 401 A 1 HETATM 13 C C6 CXT . . . B 2 18.949 33.506 -16.953 1 68.99 ? C6 CXT 401 A 1 HETATM 14 O O6 CXT . . . B 2 21.313 34.147 -11.641 1 80.73 ? O6 CXT 401 A 1 HETATM 15 C C7 CXT . . . B 2 23.044 29.575 -13.528 1 63.45 ? C7 CXT 401 A 1 HETATM 16 O O7 CXT . . . B 2 23.711 33.844 -11.729 1 72.91 ? O7 CXT 401 A 1 HETATM 17 C C8 CXT . . . B 2 23.591 28.901 -12.297 1 60.99 ? C8 CXT 401 A 1 HETATM 18 O O8 CXT . . . B 2 22.272 31.984 -11.157 1 77.64 ? O8 CXT 401 A 1 HETATM 19 C C9 CXT . . . B 2 24 27.481 -12.665 1 59.14 ? C9 CXT 401 A 1 HETATM 20 O O9 CXT . . . B 2 22.25 35.651 -14.741 1 64.78 ? O9 CXT 401 A 1 HETATM 21 C C10 CXT . . . B 2 24.333 26.664 -11.423 1 56.91 ? C10 CXT 401 A 1 HETATM 22 O O10 CXT . . . B 2 20.498 36.671 -13.439 1 67.36 ? O10 CXT 401 A 1 HETATM 23 C C11 CXT . . . B 2 22.917 26.799 -13.49 1 62.65 ? C11 CXT 401 A 1 HETATM 24 O O11 CXT . . . B 2 20.202 36.375 -15.816 1 60.71 ? O11 CXT 401 A 1 HETATM 25 O O12 CXT . . . B 2 19.981 33.537 -17.945 1 70.09 ? O12 CXT 401 A 1 HETATM 26 O O13 CXT . . . B 2 23.759 29.787 -14.493 1 68.27 ? O13 CXT 401 A 1 HETATM 27 C C21 CXT . . . B 2 20.098 27.101 -16.993 1 55.78 ? C21 CXT 401 A 1 HETATM 28 O O21 CXT . . . B 2 20.039 21.158 -18.042 1 43.54 ? O21 CXT 401 A 1 HETATM 29 C C22 CXT . . . B 2 19.643 28.172 -16.012 1 57.33 ? C22 CXT 401 A 1 HETATM 30 O O22 CXT . . . B 2 17.046 28.066 -14.149 1 75.5 ? O22 CXT 401 A 1 HETATM 31 C C23 CXT . . . B 2 19.581 27.592 -14.602 1 58.64 ? C23 CXT 401 A 1 HETATM 32 O O23 CXT . . . B 2 16.28 26.119 -14.769 1 78.38 ? O23 CXT 401 A 1 HETATM 33 C C24 CXT . . . B 2 18.663 26.38 -14.515 1 62.59 ? C24 CXT 401 A 1 HETATM 34 O O24 CXT . . . B 2 17.954 25.666 -12.376 1 76.29 ? O24 CXT 401 A 1 HETATM 35 C C25 CXT . . . B 2 19.053 25.354 -15.606 1 50.51 ? C25 CXT 401 A 1 HETATM 36 O O25 CXT . . . B 2 20.034 25.243 -12.951 1 74.69 ? O25 CXT 401 A 1 HETATM 37 C C26 CXT . . . B 2 18.256 24.054 -15.591 1 50.79 ? C26 CXT 401 A 1 HETATM 38 C C27 CXT . . . B 2 19.004 22.996 -16.388 1 44.79 ? C27 CXT 401 A 1 HETATM 39 C C28 CXT . . . B 2 19.241 23.429 -17.832 1 40.09 ? C28 CXT 401 A 1 HETATM 40 C C29 CXT . . . B 2 19.796 24.866 -17.945 1 38.07 ? C29 CXT 401 A 1 HETATM 41 C C30 CXT . . . B 2 19.141 25.921 -17.026 1 46.87 ? C30 CXT 401 A 1 HETATM 42 C C31 CXT . . . B 2 19.895 25.342 -19.404 1 34.66 ? C31 CXT 401 A 1 HETATM 43 C C32 CXT . . . B 2 18.856 24.777 -20.38 1 39.01 ? C32 CXT 401 A 1 HETATM 44 C C33 CXT . . . B 2 18.546 23.318 -20.098 1 37.5 ? C33 CXT 401 A 1 HETATM 45 C C34 CXT . . . B 2 17.99 23.27 -18.69 1 34.03 ? C34 CXT 401 A 1 HETATM 46 C C35 CXT . . . B 2 20.244 22.494 -18.497 1 40.49 ? C35 CXT 401 A 1 HETATM 47 C C36 CXT . . . B 2 19.832 22.591 -19.928 1 38.52 ? C36 CXT 401 A 1 HETATM 48 C C37 CXT . . . B 2 17.234 26.877 -14.487 1 72.72 ? C37 CXT 401 A 1 HETATM 49 C C38 CXT . . . B 2 18.902 25.717 -13.189 1 72.01 ? C38 CXT 401 A 1 HETATM 50 C C39 CXT . . . B 2 17.809 26.423 -17.578 1 40.18 ? C39 CXT 401 A 1 HETATM 51 C C40 CXT . . . B 2 20.531 22.093 -20.93 1 37.53 ? C40 CXT 401 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 51 #