data_4C9G
#
_model_server_result.job_id            Ci4780xU3Q1LiLrYEKwcig 
_model_server_result.datetime_utc      '2024-11-23 21:58:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4c9g 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":801}' 
#
_entry.id    4C9G 
#
_exptl.entry_id    4C9G 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              1464.043 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            CARDIOLIPIN 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4C9G 
_cell.length_a            66.9 
_cell.length_b            105.67 
_cell.length_c            98.61 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4C9G 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
#
_chem_comp.formula           'C81 H156 O17 P2 -2' 
_chem_comp.formula_weight    1464.043 
_chem_comp.id                CDL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              CARDIOLIPIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "DIPHOSPHATIDYL GLYCEROL;BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 CDL sing 121 n n 
C1 CA2 CDL sing 122 n n 
C1 CB2 CDL sing 123 n n 
C1 H1 CDL sing 124 n n 
O1 H1O1 CDL sing 125 n n 
CA2 OA2 CDL sing 126 n n 
CA2 HA22 CDL sing 127 n n 
CA2 HA21 CDL sing 128 n n 
OA2 PA1 CDL sing 129 n n 
PA1 OA3 CDL doub 130 n n 
PA1 OA4 CDL sing 131 n n 
PA1 OA5 CDL sing 132 n n 
OA5 CA3 CDL sing 133 n n 
CA3 CA4 CDL sing 134 n n 
CA3 HA32 CDL sing 135 n n 
CA3 HA31 CDL sing 136 n n 
CA4 OA6 CDL sing 137 n n 
CA4 CA6 CDL sing 138 n n 
CA4 HA4 CDL sing 139 n n 
OA6 CA5 CDL sing 140 n n 
CA5 OA7 CDL doub 141 n n 
CA5 C11 CDL sing 142 n n 
C11 C12 CDL sing 143 n n 
C11 H112 CDL sing 144 n n 
C11 H111 CDL sing 145 n n 
C12 C13 CDL sing 146 n n 
C12 H122 CDL sing 147 n n 
C12 H121 CDL sing 148 n n 
C13 C14 CDL sing 149 n n 
C13 H132 CDL sing 150 n n 
C13 H131 CDL sing 151 n n 
C14 C15 CDL sing 152 n n 
C14 H142 CDL sing 153 n n 
C14 H141 CDL sing 154 n n 
C15 C16 CDL sing 155 n n 
C15 H152 CDL sing 156 n n 
C15 H151 CDL sing 157 n n 
C16 C17 CDL sing 158 n n 
C16 H162 CDL sing 159 n n 
C16 H161 CDL sing 160 n n 
C17 C18 CDL sing 161 n n 
C17 H172 CDL sing 162 n n 
C17 H171 CDL sing 163 n n 
C18 C19 CDL sing 164 n n 
C18 H182 CDL sing 165 n n 
C18 H181 CDL sing 166 n n 
C19 C20 CDL sing 167 n n 
C19 H192 CDL sing 168 n n 
C19 H191 CDL sing 169 n n 
C20 C21 CDL sing 170 n n 
C20 H202 CDL sing 171 n n 
C20 H201 CDL sing 172 n n 
C21 C22 CDL sing 173 n n 
C21 H212 CDL sing 174 n n 
C21 H211 CDL sing 175 n n 
C22 C23 CDL sing 176 n n 
C22 H222 CDL sing 177 n n 
C22 H221 CDL sing 178 n n 
C23 C24 CDL sing 179 n n 
C23 H232 CDL sing 180 n n 
C23 H231 CDL sing 181 n n 
C24 C25 CDL sing 182 n n 
C24 H242 CDL sing 183 n n 
C24 H241 CDL sing 184 n n 
C25 C26 CDL sing 185 n n 
C25 H252 CDL sing 186 n n 
C25 H251 CDL sing 187 n n 
C26 C27 CDL sing 188 n n 
C26 H262 CDL sing 189 n n 
C26 H261 CDL sing 190 n n 
C27 H273 CDL sing 191 n n 
C27 H272 CDL sing 192 n n 
C27 H271 CDL sing 193 n n 
CA6 OA8 CDL sing 194 n n 
CA6 HA62 CDL sing 195 n n 
CA6 HA61 CDL sing 196 n n 
OA8 CA7 CDL sing 197 n n 
CA7 OA9 CDL doub 198 n n 
CA7 C31 CDL sing 199 n n 
C31 C32 CDL sing 200 n n 
C31 H312 CDL sing 201 n n 
C31 H311 CDL sing 202 n n 
C32 C33 CDL sing 203 n n 
C32 H322 CDL sing 204 n n 
C32 H321 CDL sing 205 n n 
C33 C34 CDL sing 206 n n 
C33 H332 CDL sing 207 n n 
C33 H331 CDL sing 208 n n 
C34 C35 CDL sing 209 n n 
C34 H342 CDL sing 210 n n 
C34 H341 CDL sing 211 n n 
C35 C36 CDL sing 212 n n 
C35 H352 CDL sing 213 n n 
C35 H351 CDL sing 214 n n 
C36 C37 CDL sing 215 n n 
C36 H362 CDL sing 216 n n 
C36 H361 CDL sing 217 n n 
C37 C38 CDL sing 218 n n 
C37 H372 CDL sing 219 n n 
C37 H371 CDL sing 220 n n 
C38 C39 CDL sing 221 n n 
C38 H382 CDL sing 222 n n 
C38 H381 CDL sing 223 n n 
C39 C40 CDL sing 224 n n 
C39 H392 CDL sing 225 n n 
C39 H391 CDL sing 226 n n 
C40 C41 CDL sing 227 n n 
C40 H402 CDL sing 228 n n 
C40 H401 CDL sing 229 n n 
C41 C42 CDL sing 230 n n 
C41 H412 CDL sing 231 n n 
C41 H411 CDL sing 232 n n 
C42 C43 CDL sing 233 n n 
C42 H422 CDL sing 234 n n 
C42 H421 CDL sing 235 n n 
C43 C44 CDL sing 236 n n 
C43 H432 CDL sing 237 n n 
C43 H431 CDL sing 238 n n 
C44 C45 CDL sing 239 n n 
C44 H442 CDL sing 240 n n 
C44 H441 CDL sing 241 n n 
C45 C46 CDL sing 242 n n 
C45 H452 CDL sing 243 n n 
C45 H451 CDL sing 244 n n 
C46 C47 CDL sing 245 n n 
C46 H462 CDL sing 246 n n 
C46 H461 CDL sing 247 n n 
C47 H473 CDL sing 248 n n 
C47 H472 CDL sing 249 n n 
C47 H471 CDL sing 250 n n 
CB2 OB2 CDL sing 251 n n 
CB2 HB22 CDL sing 252 n n 
CB2 HB21 CDL sing 253 n n 
OB2 PB2 CDL sing 254 n n 
PB2 OB3 CDL doub 255 n n 
PB2 OB4 CDL sing 256 n n 
PB2 OB5 CDL sing 257 n n 
OB5 CB3 CDL sing 258 n n 
CB3 CB4 CDL sing 259 n n 
CB3 HB32 CDL sing 260 n n 
CB3 HB31 CDL sing 261 n n 
CB4 OB6 CDL sing 262 n n 
CB4 CB6 CDL sing 263 n n 
CB4 HB4 CDL sing 264 n n 
OB6 CB5 CDL sing 265 n n 
CB5 OB7 CDL doub 266 n n 
CB5 C51 CDL sing 267 n n 
C51 C52 CDL sing 268 n n 
C51 H512 CDL sing 269 n n 
C51 H511 CDL sing 270 n n 
C52 C53 CDL sing 271 n n 
C52 H522 CDL sing 272 n n 
C52 H521 CDL sing 273 n n 
C53 C54 CDL sing 274 n n 
C53 H532 CDL sing 275 n n 
C53 H531 CDL sing 276 n n 
C54 C55 CDL sing 277 n n 
C54 H542 CDL sing 278 n n 
C54 H541 CDL sing 279 n n 
C55 C56 CDL sing 280 n n 
C55 H552 CDL sing 281 n n 
C55 H551 CDL sing 282 n n 
C56 C57 CDL sing 283 n n 
C56 H562 CDL sing 284 n n 
C56 H561 CDL sing 285 n n 
C57 C58 CDL sing 286 n n 
C57 H572 CDL sing 287 n n 
C57 H571 CDL sing 288 n n 
C58 C59 CDL sing 289 n n 
C58 H582 CDL sing 290 n n 
C58 H581 CDL sing 291 n n 
C59 C60 CDL sing 292 n n 
C59 H592 CDL sing 293 n n 
C59 H591 CDL sing 294 n n 
C60 C61 CDL sing 295 n n 
C60 H602 CDL sing 296 n n 
C60 H601 CDL sing 297 n n 
C61 C62 CDL sing 298 n n 
C61 H612 CDL sing 299 n n 
C61 H611 CDL sing 300 n n 
C62 C63 CDL sing 301 n n 
C62 H622 CDL sing 302 n n 
C62 H621 CDL sing 303 n n 
C63 C64 CDL sing 304 n n 
C63 H632 CDL sing 305 n n 
C63 H631 CDL sing 306 n n 
C64 C65 CDL sing 307 n n 
C64 H642 CDL sing 308 n n 
C64 H641 CDL sing 309 n n 
C65 C66 CDL sing 310 n n 
C65 H652 CDL sing 311 n n 
C65 H651 CDL sing 312 n n 
C66 C67 CDL sing 313 n n 
C66 H662 CDL sing 314 n n 
C66 H661 CDL sing 315 n n 
C67 H673 CDL sing 316 n n 
C67 H672 CDL sing 317 n n 
C67 H671 CDL sing 318 n n 
CB6 OB8 CDL sing 319 n n 
CB6 HB62 CDL sing 320 n n 
CB6 HB61 CDL sing 321 n n 
OB8 CB7 CDL sing 322 n n 
CB7 OB9 CDL doub 323 n n 
CB7 C71 CDL sing 324 n n 
C71 C72 CDL sing 325 n n 
C71 H712 CDL sing 326 n n 
C71 H711 CDL sing 327 n n 
C72 C73 CDL sing 328 n n 
C72 H722 CDL sing 329 n n 
C72 H721 CDL sing 330 n n 
C73 C74 CDL sing 331 n n 
C73 H732 CDL sing 332 n n 
C73 H731 CDL sing 333 n n 
C74 C75 CDL sing 334 n n 
C74 H742 CDL sing 335 n n 
C74 H741 CDL sing 336 n n 
C75 C76 CDL sing 337 n n 
C75 H752 CDL sing 338 n n 
C75 H751 CDL sing 339 n n 
C76 C77 CDL sing 340 n n 
C76 H762 CDL sing 341 n n 
C76 H761 CDL sing 342 n n 
C77 C78 CDL sing 343 n n 
C77 H772 CDL sing 344 n n 
C77 H771 CDL sing 345 n n 
C78 C79 CDL sing 346 n n 
C78 H782 CDL sing 347 n n 
C78 H781 CDL sing 348 n n 
C79 C80 CDL sing 349 n n 
C79 H792 CDL sing 350 n n 
C79 H791 CDL sing 351 n n 
C80 C81 CDL sing 352 n n 
C80 H802 CDL sing 353 n n 
C80 H801 CDL sing 354 n n 
C81 C82 CDL sing 355 n n 
C81 H812 CDL sing 356 n n 
C81 H811 CDL sing 357 n n 
C82 C83 CDL sing 358 n n 
C82 H822 CDL sing 359 n n 
C82 H821 CDL sing 360 n n 
C83 C84 CDL sing 361 n n 
C83 H832 CDL sing 362 n n 
C83 H831 CDL sing 363 n n 
C84 C85 CDL sing 364 n n 
C84 H842 CDL sing 365 n n 
C84 H841 CDL sing 366 n n 
C85 C86 CDL sing 367 n n 
C85 H852 CDL sing 368 n n 
C85 H851 CDL sing 369 n n 
C86 C87 CDL sing 370 n n 
C86 H862 CDL sing 371 n n 
C86 H861 CDL sing 372 n n 
C87 H873 CDL sing 373 n n 
C87 H872 CDL sing 374 n n 
C87 H871 CDL sing 375 n n 
#
_atom_sites.entry_id                     4C9G 
_atom_sites.fract_transf_matrix[1][1]    0.014948 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009463 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010141 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CXT A 1 401 401 CXT CXT . 
C 3 CDL A 1 800 800 CDL CDL . 
D 3 CDL A 1 801 801 CDL CDL . 
E 3 CDL A 1 802 802 CDL CDL . 
F 4 BNG A 1 1310 1310 BNG BNG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 CDL . . . D 3 1.534 14.969 -23.008 1 87.08 ? C1 CDL 801 A 1 
HETATM 2 O O1 CDL . . . D 3 1.951 14.732 -24.359 1 86.92 ? O1 CDL 801 A 1 
HETATM 3 C CA2 CDL . . . D 3 2.726 15.397 -22.161 1 84.76 ? CA2 CDL 801 A 1 
HETATM 4 O OA2 CDL . . . D 3 3.899 14.886 -22.781 1 83.59 ? OA2 CDL 801 A 1 
HETATM 5 P PA1 CDL . . . D 3 5.323 15.618 -22.626 1 65.41 ? PA1 CDL 801 A 1 
HETATM 6 O OA3 CDL . . . D 3 5.186 16.824 -21.738 1 67.85 ? OA3 CDL 801 A 1 
HETATM 7 O OA4 CDL . . . D 3 6.354 14.569 -22.289 1 74.05 ? OA4 CDL 801 A 1 
HETATM 8 O OA5 CDL . . . D 3 5.527 16.083 -24.155 1 61.26 ? OA5 CDL 801 A 1 
HETATM 9 C CA3 CDL . . . D 3 6.26 17.251 -24.514 1 69.83 ? CA3 CDL 801 A 1 
HETATM 10 C CA4 CDL . . . D 3 5.822 17.654 -25.917 1 77.11 ? CA4 CDL 801 A 1 
HETATM 11 O OA6 CDL . . . D 3 6.848 18.367 -26.606 1 78.32 ? OA6 CDL 801 A 1 
HETATM 12 C CA5 CDL . . . D 3 6.791 18.078 -28.031 1 79.5 ? CA5 CDL 801 A 1 
HETATM 13 O OA7 CDL . . . D 3 6.512 16.946 -28.393 1 76.9 ? OA7 CDL 801 A 1 
HETATM 14 C C11 CDL . . . D 3 7.049 19.167 -29.046 1 82.37 ? C11 CDL 801 A 1 
HETATM 15 C C12 CDL . . . D 3 8.205 18.778 -29.959 1 84.48 ? C12 CDL 801 A 1 
HETATM 16 C C13 CDL . . . D 3 8.538 19.907 -30.928 1 84.32 ? C13 CDL 801 A 1 
HETATM 17 C C14 CDL . . . D 3 8.599 21.25 -30.209 1 82.46 ? C14 CDL 801 A 1 
HETATM 18 C C15 CDL . . . D 3 8.776 22.388 -31.207 1 82.88 ? C15 CDL 801 A 1 
HETATM 19 C C16 CDL . . . D 3 8.591 23.743 -30.534 1 85.11 ? C16 CDL 801 A 1 
HETATM 20 C CA6 CDL . . . D 3 4.606 18.561 -25.822 1 82.82 ? CA6 CDL 801 A 1 
HETATM 21 O OA8 CDL . . . D 3 4.982 19.743 -25.122 1 87.05 ? OA8 CDL 801 A 1 
HETATM 22 C CA7 CDL . . . D 3 5.05 20.997 -25.854 1 93.58 ? CA7 CDL 801 A 1 
HETATM 23 O OA9 CDL . . . D 3 5.559 21.004 -26.963 1 99.07 ? OA9 CDL 801 A 1 
HETATM 24 C C31 CDL . . . D 3 4.483 22.267 -25.267 1 90.58 ? C31 CDL 801 A 1 
HETATM 25 C CB2 CDL . . . D 3 0.941 13.693 -22.432 1 89.32 ? CB2 CDL 801 A 1 
HETATM 26 O OB2 CDL . . . D 3 0.463 14.007 -21.131 1 91.64 ? OB2 CDL 801 A 1 
HETATM 27 P PB2 CDL . . . D 3 -1.123 14.003 -20.881 1 75.05 ? PB2 CDL 801 A 1 
HETATM 28 O OB3 CDL . . . D 3 -1.463 12.906 -19.898 1 80.65 ? OB3 CDL 801 A 1 
HETATM 29 O OB4 CDL . . . D 3 -1.783 14.06 -22.24 1 62.96 ? OB4 CDL 801 A 1 
HETATM 30 O OB5 CDL . . . D 3 -1.282 15.413 -20.128 1 116.88 ? OB5 CDL 801 A 1 
HETATM 31 C CB3 CDL . . . D 3 -2.52 16.108 -20.028 1 115.45 ? CB3 CDL 801 A 1 
HETATM 32 C CB4 CDL . . . D 3 -2.157 17.511 -19.567 1 113.71 ? CB4 CDL 801 A 1 
HETATM 33 O OB6 CDL . . . D 3 -3.313 18.216 -19.125 1 112.25 ? OB6 CDL 801 A 1 
HETATM 34 C CB5 CDL . . . D 3 -2.944 19.299 -18.227 1 112.11 ? CB5 CDL 801 A 1 
HETATM 35 O OB7 CDL . . . D 3 -1.892 19.221 -17.613 1 112.89 ? OB7 CDL 801 A 1 
HETATM 36 C C51 CDL . . . D 3 -3.845 20.5 -18.064 1 110.34 ? C51 CDL 801 A 1 
HETATM 37 C CB6 CDL . . . D 3 -1.526 18.234 -20.751 1 114.29 ? CB6 CDL 801 A 1 
HETATM 38 O OB8 CDL . . . D 3 -0.642 19.245 -20.278 1 115.53 ? OB8 CDL 801 A 1 
HETATM 39 C CB7 CDL . . . D 3 0.239 19.921 -21.216 1 115.18 ? CB7 CDL 801 A 1 
HETATM 40 O OB9 CDL . . . D 3 0.254 19.552 -22.378 1 116.05 ? OB9 CDL 801 A 1 
HETATM 41 C C71 CDL . . . D 3 1.119 21.056 -20.749 1 113.01 ? C71 CDL 801 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           41 
#