data_4C9H # _model_server_result.job_id Arb7hk7z_SQLNJmtqRnY3A _model_server_result.datetime_utc '2024-11-23 21:41:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4c9h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 4C9H # _exptl.entry_id 4C9H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 770.816 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Carboxyatractyloside _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4C9H _cell.length_a 67.354 _cell.length_b 98.203 _cell.length_c 105.061 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4C9H _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G 1 1 B,H,I,J,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 H N N # _chem_comp.formula 'C31 H46 O18 S2' _chem_comp.formula_weight 770.816 _chem_comp.id CXT _chem_comp.mon_nstd_flag . _chem_comp.name Carboxyatractyloside _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 CXT sing 403 n n O2 C1 CXT sing 404 n n C1 C2 CXT sing 405 n n C1 H1 CXT sing 406 n n O1 C5 CXT sing 407 n n O4 S1 CXT sing 408 n n S1 O7 CXT doub 409 n n S1 O6 CXT doub 410 n n S1 O8 CXT sing 411 n n C2 C3 CXT sing 412 n n C2 O3 CXT sing 413 n n C2 H2 CXT sing 414 n n O2 C22 CXT sing 415 n n O11 S2 CXT doub 416 n n O9 S2 CXT doub 417 n n S2 O5 CXT sing 418 n n S2 O10 CXT sing 419 n n C4 C3 CXT sing 420 n n C3 O4 CXT sing 421 n n C3 H3 CXT sing 422 n n O3 C7 CXT sing 423 n n C5 C4 CXT sing 424 n n C4 O5 CXT sing 425 n n C4 H4 CXT sing 426 n n C6 C5 CXT sing 427 n n C5 H5 CXT sing 428 n n O12 C6 CXT sing 429 n n C6 H6 CXT sing 430 n n C6 H6A CXT sing 431 n n O13 C7 CXT doub 432 n n C7 C8 CXT sing 433 n n C9 C8 CXT sing 434 n n C8 H8 CXT sing 435 n n C8 H8A CXT sing 436 n n O8 HO8 CXT sing 437 n n C11 C9 CXT sing 438 n n C9 C10 CXT sing 439 n n C9 H9 CXT sing 440 n n C10 H10 CXT sing 441 n n C10 H10A CXT sing 442 n n C10 H10B CXT sing 443 n n O10 HO10 CXT sing 444 n n C11 H11 CXT sing 445 n n C11 H11A CXT sing 446 n n C11 H11B CXT sing 447 n n O12 HO12 CXT sing 448 n n C30 C21 CXT sing 449 n n C21 C22 CXT sing 450 n n C21 H21 CXT sing 451 n n C21 H21A CXT sing 452 n n C35 O21 CXT sing 453 n n O21 HO21 CXT sing 454 n n C22 C23 CXT sing 455 n n C22 H22 CXT sing 456 n n C37 O22 CXT sing 457 n n O22 HO22 CXT sing 458 n n C23 C24 CXT sing 459 n n C23 H23 CXT sing 460 n n C23 H23A CXT sing 461 n n O23 C37 CXT doub 462 n n C25 C24 CXT sing 463 n n C24 C37 CXT sing 464 n n C24 C38 CXT sing 465 n n C38 O24 CXT sing 466 n n O24 HO24 CXT sing 467 n n C30 C25 CXT sing 468 n n C25 C26 CXT sing 469 n n C25 H25 CXT sing 470 n n C38 O25 CXT doub 471 n n C27 C26 CXT sing 472 n n C26 H26 CXT sing 473 n n C26 H26A CXT sing 474 n n C28 C27 CXT sing 475 n n C27 H27 CXT sing 476 n n C27 H27A CXT sing 477 n n C34 C28 CXT sing 478 n n C35 C28 CXT sing 479 n n C29 C28 CXT sing 480 n n C31 C29 CXT sing 481 n n C29 C30 CXT sing 482 n n C29 H29 CXT sing 483 n n C39 C30 CXT sing 484 n n C32 C31 CXT sing 485 n n C31 H31 CXT sing 486 n n C31 H31A CXT sing 487 n n C32 C33 CXT sing 488 n n C32 H32 CXT sing 489 n n C32 H32A CXT sing 490 n n C33 C36 CXT sing 491 n n C33 C34 CXT sing 492 n n C33 H33 CXT sing 493 n n C34 H34 CXT sing 494 n n C34 H34A CXT sing 495 n n C36 C35 CXT sing 496 n n C35 H35 CXT sing 497 n n C40 C36 CXT doub 498 n n C39 H39 CXT sing 499 n n C39 H39A CXT sing 500 n n C39 H39B CXT sing 501 n n C40 H40 CXT sing 502 n n C40 H40A CXT sing 503 n n # _atom_sites.entry_id 4C9H _atom_sites.fract_transf_matrix[1][1] 0.014847 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010183 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009518 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CXT A 1 401 401 CXT CXT . D 3 CDL A 1 800 800 CDL CDL . E 3 CDL A 1 801 801 CDL CDL . F 3 CDL A 1 802 802 CDL CDL . G 4 CM5 A 1 1319 1319 CM5 CM5 . H 2 CXT B 1 401 401 CXT CXT . I 3 CDL B 1 800 800 CDL CDL . J 3 CDL B 1 801 801 CDL CDL . K 3 CDL B 1 802 802 CDL CDL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CXT . . . C 2 -20.804 -9.185 -4.162 1 30.28 ? C1 CXT 401 A 1 HETATM 2 O O1 CXT . . . C 2 -20.377 -8.239 -5.142 1 31.9 ? O1 CXT 401 A 1 HETATM 3 S S1 CXT . . . C 2 -23.162 -12.597 -6.793 1 49.53 ? S1 CXT 401 A 1 HETATM 4 C C2 CXT . . . C 2 -22.014 -9.967 -4.657 1 31.05 ? C2 CXT 401 A 1 HETATM 5 O O2 CXT . . . C 2 -21.184 -8.484 -2.985 1 24.17 ? O2 CXT 401 A 1 HETATM 6 S S2 CXT . . . C 2 -21.486 -9.907 -9.493 1 36.43 ? S2 CXT 401 A 1 HETATM 7 C C3 CXT . . . C 2 -21.75 -10.594 -6.021 1 34.48 ? C3 CXT 401 A 1 HETATM 8 O O3 CXT . . . C 2 -22.314 -10.983 -3.702 1 28.33 ? O3 CXT 401 A 1 HETATM 9 C C4 CXT . . . C 2 -21.169 -9.565 -6.981 1 36.61 ? C4 CXT 401 A 1 HETATM 10 O O4 CXT . . . C 2 -22.97 -11.092 -6.564 1 40.2 ? O4 CXT 401 A 1 HETATM 11 C C5 CXT . . . C 2 -19.972 -8.858 -6.36 1 39.51 ? C5 CXT 401 A 1 HETATM 12 O O5 CXT . . . C 2 -20.768 -10.226 -8.177 1 37.18 ? O5 CXT 401 A 1 HETATM 13 C C6 CXT . . . C 2 -19.414 -7.797 -7.302 1 40.71 ? C6 CXT 401 A 1 HETATM 14 O O6 CXT . . . C 2 -22.101 -13.096 -7.697 1 57.67 ? O6 CXT 401 A 1 HETATM 15 C C7 CXT . . . C 2 -23.712 -10.967 -3.304 1 27.94 ? C7 CXT 401 A 1 HETATM 16 O O7 CXT . . . C 2 -24.487 -12.835 -7.409 1 51.6 ? O7 CXT 401 A 1 HETATM 17 C C8 CXT . . . C 2 -24.312 -12.164 -2.607 1 23.5 ? C8 CXT 401 A 1 HETATM 18 O O8 CXT . . . C 2 -23.084 -13.309 -5.497 1 41.36 ? O8 CXT 401 A 1 HETATM 19 C C9 CXT . . . C 2 -24.728 -11.77 -1.195 1 19.5 ? C9 CXT 401 A 1 HETATM 20 O O9 CXT . . . C 2 -22.921 -9.664 -9.223 1 38.56 ? O9 CXT 401 A 1 HETATM 21 C C10 CXT . . . C 2 -25.153 -12.992 -0.391 1 25.76 ? C10 CXT 401 A 1 HETATM 22 O O10 CXT . . . C 2 -21.344 -11.059 -10.409 1 55.47 ? O10 CXT 401 A 1 HETATM 23 C C11 CXT . . . C 2 -23.614 -11.009 -0.487 1 25.03 ? C11 CXT 401 A 1 HETATM 24 O O11 CXT . . . C 2 -20.884 -8.703 -10.109 1 41.47 ? O11 CXT 401 A 1 HETATM 25 O O12 CXT . . . C 2 -20.409 -6.793 -7.532 1 31.13 ? O12 CXT 401 A 1 HETATM 26 O O13 CXT . . . C 2 -24.386 -9.976 -3.532 1 33.67 ? O13 CXT 401 A 1 HETATM 27 C C21 CXT . . . C 2 -20.562 -7.53 -0.901 1 25.61 ? C21 CXT 401 A 1 HETATM 28 O O21 CXT . . . C 2 -20.513 -6.563 5.003 1 19.13 ? O21 CXT 401 A 1 HETATM 29 C C22 CXT . . . C 2 -20.199 -8.555 -1.961 1 25.74 ? C22 CXT 401 A 1 HETATM 30 O O22 CXT . . . C 2 -17.715 -10.564 -1.921 1 36.32 ? O22 CXT 401 A 1 HETATM 31 C C23 CXT . . . C 2 -20.207 -9.952 -1.351 1 30.14 ? C23 CXT 401 A 1 HETATM 32 O O23 CXT . . . C 2 -16.839 -9.936 -0.023 1 42.55 ? O23 CXT 401 A 1 HETATM 33 C C24 CXT . . . C 2 -19.242 -10.083 -0.179 1 37.75 ? C24 CXT 401 A 1 HETATM 34 O O24 CXT . . . C 2 -18.622 -12.249 0.556 1 44.68 ? O24 CXT 401 A 1 HETATM 35 C C25 CXT . . . C 2 -19.53 -8.957 0.842 1 26.01 ? C25 CXT 401 A 1 HETATM 36 O O25 CXT . . . C 2 -20.662 -11.569 1.008 1 49.26 ? O25 CXT 401 A 1 HETATM 37 C C26 CXT . . . C 2 -18.672 -8.977 2.103 1 22.01 ? C26 CXT 401 A 1 HETATM 38 C C27 CXT . . . C 2 -19.38 -8.166 3.177 1 19.07 ? C27 CXT 401 A 1 HETATM 39 C C28 CXT . . . C 2 -19.636 -6.722 2.749 1 15.41 ? C28 CXT 401 A 1 HETATM 40 C C29 CXT . . . C 2 -20.19 -6.594 1.315 1 21.29 ? C29 CXT 401 A 1 HETATM 41 C C30 CXT . . . C 2 -19.581 -7.539 0.259 1 23.55 ? C30 CXT 401 A 1 HETATM 42 C C31 CXT . . . C 2 -20.254 -5.136 0.824 1 19.07 ? C31 CXT 401 A 1 HETATM 43 C C32 CXT . . . C 2 -19.243 -4.156 1.426 1 16.86 ? C32 CXT 401 A 1 HETATM 44 C C33 CXT . . . C 2 -18.963 -4.45 2.886 1 15.19 ? C33 CXT 401 A 1 HETATM 45 C C34 CXT . . . C 2 -18.395 -5.852 2.925 1 15.75 ? C34 CXT 401 A 1 HETATM 46 C C35 CXT . . . C 2 -20.665 -6.076 3.668 1 16.43 ? C35 CXT 401 A 1 HETATM 47 C C36 CXT . . . C 2 -20.256 -4.644 3.599 1 16.7 ? C36 CXT 401 A 1 HETATM 48 C C37 CXT . . . C 2 -17.837 -10.188 -0.734 1 39.48 ? C37 CXT 401 A 1 HETATM 49 C C38 CXT . . . C 2 -19.529 -11.39 0.509 1 45.28 ? C38 CXT 401 A 1 HETATM 50 C C39 CXT . . . C 2 -18.232 -7.036 -0.246 1 17 ? C39 CXT 401 A 1 HETATM 51 C C40 CXT . . . C 2 -20.964 -3.657 4.113 1 16.02 ? C40 CXT 401 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 51 #