data_4C9J # _model_server_result.job_id div8tbPaWesW6iuagxKVJw _model_server_result.datetime_utc '2024-11-23 23:55:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4c9j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":401}' # _entry.id 4C9J # _exptl.entry_id 4C9J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 770.816 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Carboxyatractyloside _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4C9J _cell.length_a 40.286 _cell.length_b 104.168 _cell.length_c 154.143 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4C9J _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F 1 1 B,G,H,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # _chem_comp.formula 'C31 H46 O18 S2' _chem_comp.formula_weight 770.816 _chem_comp.id CXT _chem_comp.mon_nstd_flag . _chem_comp.name Carboxyatractyloside _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 CXT sing 325 n n O2 C1 CXT sing 326 n n C1 C2 CXT sing 327 n n C1 H1 CXT sing 328 n n O1 C5 CXT sing 329 n n O4 S1 CXT sing 330 n n S1 O7 CXT doub 331 n n S1 O6 CXT doub 332 n n S1 O8 CXT sing 333 n n C2 C3 CXT sing 334 n n C2 O3 CXT sing 335 n n C2 H2 CXT sing 336 n n O2 C22 CXT sing 337 n n O11 S2 CXT doub 338 n n O9 S2 CXT doub 339 n n S2 O5 CXT sing 340 n n S2 O10 CXT sing 341 n n C4 C3 CXT sing 342 n n C3 O4 CXT sing 343 n n C3 H3 CXT sing 344 n n O3 C7 CXT sing 345 n n C5 C4 CXT sing 346 n n C4 O5 CXT sing 347 n n C4 H4 CXT sing 348 n n C6 C5 CXT sing 349 n n C5 H5 CXT sing 350 n n O12 C6 CXT sing 351 n n C6 H6 CXT sing 352 n n C6 H6A CXT sing 353 n n O13 C7 CXT doub 354 n n C7 C8 CXT sing 355 n n C9 C8 CXT sing 356 n n C8 H8 CXT sing 357 n n C8 H8A CXT sing 358 n n O8 HO8 CXT sing 359 n n C11 C9 CXT sing 360 n n C9 C10 CXT sing 361 n n C9 H9 CXT sing 362 n n C10 H10 CXT sing 363 n n C10 H10A CXT sing 364 n n C10 H10B CXT sing 365 n n O10 HO10 CXT sing 366 n n C11 H11 CXT sing 367 n n C11 H11A CXT sing 368 n n C11 H11B CXT sing 369 n n O12 HO12 CXT sing 370 n n C30 C21 CXT sing 371 n n C21 C22 CXT sing 372 n n C21 H21 CXT sing 373 n n C21 H21A CXT sing 374 n n C35 O21 CXT sing 375 n n O21 HO21 CXT sing 376 n n C22 C23 CXT sing 377 n n C22 H22 CXT sing 378 n n C37 O22 CXT sing 379 n n O22 HO22 CXT sing 380 n n C23 C24 CXT sing 381 n n C23 H23 CXT sing 382 n n C23 H23A CXT sing 383 n n O23 C37 CXT doub 384 n n C25 C24 CXT sing 385 n n C24 C37 CXT sing 386 n n C24 C38 CXT sing 387 n n C38 O24 CXT sing 388 n n O24 HO24 CXT sing 389 n n C30 C25 CXT sing 390 n n C25 C26 CXT sing 391 n n C25 H25 CXT sing 392 n n C38 O25 CXT doub 393 n n C27 C26 CXT sing 394 n n C26 H26 CXT sing 395 n n C26 H26A CXT sing 396 n n C28 C27 CXT sing 397 n n C27 H27 CXT sing 398 n n C27 H27A CXT sing 399 n n C34 C28 CXT sing 400 n n C35 C28 CXT sing 401 n n C29 C28 CXT sing 402 n n C31 C29 CXT sing 403 n n C29 C30 CXT sing 404 n n C29 H29 CXT sing 405 n n C39 C30 CXT sing 406 n n C32 C31 CXT sing 407 n n C31 H31 CXT sing 408 n n C31 H31A CXT sing 409 n n C32 C33 CXT sing 410 n n C32 H32 CXT sing 411 n n C32 H32A CXT sing 412 n n C33 C36 CXT sing 413 n n C33 C34 CXT sing 414 n n C33 H33 CXT sing 415 n n C34 H34 CXT sing 416 n n C34 H34A CXT sing 417 n n C36 C35 CXT sing 418 n n C35 H35 CXT sing 419 n n C40 C36 CXT doub 420 n n C39 H39 CXT sing 421 n n C39 H39A CXT sing 422 n n C39 H39B CXT sing 423 n n C40 H40 CXT sing 424 n n C40 H40A CXT sing 425 n n # _atom_sites.entry_id 4C9J _atom_sites.fract_transf_matrix[1][1] 0.024823 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0096 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006487 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CXT A 1 401 401 CXT CXT . D 3 CDL A 1 800 800 CDL CDL . E 3 CDL A 1 801 801 CDL CDL . F 3 CDL A 1 802 802 CDL CDL . G 2 CXT B 1 401 401 CXT CXT . H 3 CDL B 1 800 800 CDL CDL . I 3 CDL B 1 801 801 CDL CDL . J 3 CDL B 1 802 802 CDL CDL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CXT . . . G 2 30.714 4.215 192.27 1 59.64 ? C1 CXT 401 B 1 HETATM 2 O O1 CXT . . . G 2 29.698 4.972 191.612 1 72.75 ? O1 CXT 401 B 1 HETATM 3 S S1 CXT . . . G 2 34.465 7.323 192.623 1 108.34 ? S1 CXT 401 B 1 HETATM 4 C C2 CXT . . . G 2 32.088 4.827 192.017 1 68.52 ? C2 CXT 401 B 1 HETATM 5 O O2 CXT . . . G 2 30.71 2.885 191.757 1 44.94 ? O2 CXT 401 B 1 HETATM 6 S S2 CXT . . . G 2 31.21 9.585 191.362 1 81 ? S2 CXT 401 B 1 HETATM 7 C C3 CXT . . . G 2 32.122 6.326 192.293 1 71.46 ? C3 CXT 401 B 1 HETATM 8 O O3 CXT . . . G 2 33.036 4.178 192.863 1 74.31 ? O3 CXT 401 B 1 HETATM 9 C C4 CXT . . . G 2 30.914 7.047 191.708 1 65.81 ? C4 CXT 401 B 1 HETATM 10 O O4 CXT . . . G 2 33.311 6.866 191.721 1 71.99 ? O4 CXT 401 B 1 HETATM 11 C C5 CXT . . . G 2 29.627 6.319 192.074 1 71.73 ? C5 CXT 401 B 1 HETATM 12 O O5 CXT . . . G 2 30.867 8.37 192.237 1 89.59 ? O5 CXT 401 B 1 HETATM 13 C C6 CXT . . . G 2 28.419 7.007 191.449 1 86.5 ? C6 CXT 401 B 1 HETATM 14 O O6 CXT . . . G 2 34.191 8.69 193.121 1 92.19 ? O6 CXT 401 B 1 HETATM 15 C C7 CXT . . . G 2 33.923 3.282 192.137 1 61.71 ? C7 CXT 401 B 1 HETATM 16 O O7 CXT . . . G 2 35.722 7.321 191.84 1 88.41 ? O7 CXT 401 B 1 HETATM 17 C C8 CXT . . . G 2 35.146 2.725 192.828 1 68.5 ? C8 CXT 401 B 1 HETATM 18 O O8 CXT . . . G 2 34.6 6.392 193.767 1 89.64 ? O8 CXT 401 B 1 HETATM 19 C C9 CXT . . . G 2 35.664 1.492 192.097 1 55.11 ? C9 CXT 401 B 1 HETATM 20 O O9 CXT . . . G 2 32.32 9.241 190.445 1 78.83 ? O9 CXT 401 B 1 HETATM 21 C C10 CXT . . . G 2 37.07 1.14 192.567 1 56.91 ? C10 CXT 401 B 1 HETATM 22 O O10 CXT . . . G 2 31.627 10.709 192.231 1 83.43 ? O10 CXT 401 B 1 HETATM 23 C C11 CXT . . . G 2 34.727 0.304 192.284 1 30.39 ? C11 CXT 401 B 1 HETATM 24 O O11 CXT . . . G 2 30.02 9.982 190.578 1 72.65 ? O11 CXT 401 B 1 HETATM 25 O O12 CXT . . . G 2 28.573 7.041 190.026 1 100.15 ? O12 CXT 401 B 1 HETATM 26 O O13 CXT . . . G 2 33.667 2.997 190.978 1 50.47 ? O13 CXT 401 B 1 HETATM 27 C C21 CXT . . . G 2 29.716 0.708 191.807 1 50.05 ? C21 CXT 401 B 1 HETATM 28 O O21 CXT . . . G 2 29.649 -5.241 192.2 1 53.53 ? O21 CXT 401 B 1 HETATM 29 C C22 CXT . . . G 2 30.049 1.957 192.613 1 47.92 ? C22 CXT 401 B 1 HETATM 30 O O22 CXT . . . G 2 29.426 2.455 195.727 1 68.18 ? O22 CXT 401 B 1 HETATM 31 C C23 CXT . . . G 2 30.984 1.599 193.762 1 51.44 ? C23 CXT 401 B 1 HETATM 32 O O23 CXT . . . G 2 28.397 0.562 196.064 1 73.69 ? O23 CXT 401 B 1 HETATM 33 C C24 CXT . . . G 2 30.384 0.554 194.693 1 71.22 ? C24 CXT 401 B 1 HETATM 34 O O24 CXT . . . G 2 31.415 0.426 196.827 1 55.65 ? O24 CXT 401 B 1 HETATM 35 C C25 CXT . . . G 2 29.963 -0.676 193.855 1 59 ? C25 CXT 401 B 1 HETATM 36 O O25 CXT . . . G 2 32.412 -0.587 195.153 1 78.48 ? O25 CXT 401 B 1 HETATM 37 C C26 CXT . . . G 2 29.414 -1.854 194.653 1 59.99 ? C26 CXT 401 B 1 HETATM 38 C C27 CXT . . . G 2 29.558 -3.102 193.795 1 51.45 ? C27 CXT 401 B 1 HETATM 39 C C28 CXT . . . G 2 28.806 -2.984 192.47 1 39.89 ? C28 CXT 401 B 1 HETATM 40 C C29 CXT . . . G 2 29.01 -1.631 191.755 1 57.11 ? C29 CXT 401 B 1 HETATM 41 C C30 CXT . . . G 2 29.06 -0.376 192.651 1 47.92 ? C30 CXT 401 B 1 HETATM 42 C C31 CXT . . . G 2 28.072 -1.446 190.546 1 63.84 ? C31 CXT 401 B 1 HETATM 43 C C32 CXT . . . G 2 26.746 -2.216 190.559 1 58.15 ? C32 CXT 401 B 1 HETATM 44 C C33 CXT . . . G 2 26.866 -3.57 191.233 1 49.14 ? C33 CXT 401 B 1 HETATM 45 C C34 CXT . . . G 2 27.32 -3.286 192.648 1 44.59 ? C34 CXT 401 B 1 HETATM 46 C C35 CXT . . . G 2 29.284 -4.052 191.495 1 46.82 ? C35 CXT 401 B 1 HETATM 47 C C36 CXT . . . G 2 28.053 -4.282 190.683 1 45.31 ? C36 CXT 401 B 1 HETATM 48 C C37 CXT . . . G 2 29.324 1.222 195.545 1 71.93 ? C37 CXT 401 B 1 HETATM 49 C C38 CXT . . . G 2 31.478 0.098 195.622 1 70.42 ? C38 CXT 401 B 1 HETATM 50 C C39 CXT . . . G 2 27.657 0.084 193.036 1 41.46 ? C39 CXT 401 B 1 HETATM 51 C C40 CXT . . . G 2 28.021 -5.03 189.596 1 39.47 ? C40 CXT 401 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 708 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 51 #