data_4C9J # _model_server_result.job_id 8klH80HF3QlCLmIIBeXvgw _model_server_result.datetime_utc '2024-11-04 22:54:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4c9j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":801}' # _entry.id 4C9J # _exptl.entry_id 4C9J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 1464.043 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CARDIOLIPIN _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4C9J _cell.length_a 40.286 _cell.length_b 104.168 _cell.length_c 154.143 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4C9J _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F 1 1 B,G,H,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 H N N ? 3 I N N ? 3 J N N # _chem_comp.formula 'C81 H156 O17 P2 -2' _chem_comp.formula_weight 1464.043 _chem_comp.id CDL _chem_comp.mon_nstd_flag . _chem_comp.name CARDIOLIPIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "DIPHOSPHATIDYL GLYCEROL;BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CDL sing 70 n n C1 CA2 CDL sing 71 n n C1 CB2 CDL sing 72 n n C1 H1 CDL sing 73 n n O1 H1O1 CDL sing 74 n n CA2 OA2 CDL sing 75 n n CA2 HA22 CDL sing 76 n n CA2 HA21 CDL sing 77 n n OA2 PA1 CDL sing 78 n n PA1 OA3 CDL doub 79 n n PA1 OA4 CDL sing 80 n n PA1 OA5 CDL sing 81 n n OA5 CA3 CDL sing 82 n n CA3 CA4 CDL sing 83 n n CA3 HA32 CDL sing 84 n n CA3 HA31 CDL sing 85 n n CA4 OA6 CDL sing 86 n n CA4 CA6 CDL sing 87 n n CA4 HA4 CDL sing 88 n n OA6 CA5 CDL sing 89 n n CA5 OA7 CDL doub 90 n n CA5 C11 CDL sing 91 n n C11 C12 CDL sing 92 n n C11 H112 CDL sing 93 n n C11 H111 CDL sing 94 n n C12 C13 CDL sing 95 n n C12 H122 CDL sing 96 n n C12 H121 CDL sing 97 n n C13 C14 CDL sing 98 n n C13 H132 CDL sing 99 n n C13 H131 CDL sing 100 n n C14 C15 CDL sing 101 n n C14 H142 CDL sing 102 n n C14 H141 CDL sing 103 n n C15 C16 CDL sing 104 n n C15 H152 CDL sing 105 n n C15 H151 CDL sing 106 n n C16 C17 CDL sing 107 n n C16 H162 CDL sing 108 n n C16 H161 CDL sing 109 n n C17 C18 CDL sing 110 n n C17 H172 CDL sing 111 n n C17 H171 CDL sing 112 n n C18 C19 CDL sing 113 n n C18 H182 CDL sing 114 n n C18 H181 CDL sing 115 n n C19 C20 CDL sing 116 n n C19 H192 CDL sing 117 n n C19 H191 CDL sing 118 n n C20 C21 CDL sing 119 n n C20 H202 CDL sing 120 n n C20 H201 CDL sing 121 n n C21 C22 CDL sing 122 n n C21 H212 CDL sing 123 n n C21 H211 CDL sing 124 n n C22 C23 CDL sing 125 n n C22 H222 CDL sing 126 n n C22 H221 CDL sing 127 n n C23 C24 CDL sing 128 n n C23 H232 CDL sing 129 n n C23 H231 CDL sing 130 n n C24 C25 CDL sing 131 n n C24 H242 CDL sing 132 n n C24 H241 CDL sing 133 n n C25 C26 CDL sing 134 n n C25 H252 CDL sing 135 n n C25 H251 CDL sing 136 n n C26 C27 CDL sing 137 n n C26 H262 CDL sing 138 n n C26 H261 CDL sing 139 n n C27 H273 CDL sing 140 n n C27 H272 CDL sing 141 n n C27 H271 CDL sing 142 n n CA6 OA8 CDL sing 143 n n CA6 HA62 CDL sing 144 n n CA6 HA61 CDL sing 145 n n OA8 CA7 CDL sing 146 n n CA7 OA9 CDL doub 147 n n CA7 C31 CDL sing 148 n n C31 C32 CDL sing 149 n n C31 H312 CDL sing 150 n n C31 H311 CDL sing 151 n n C32 C33 CDL sing 152 n n C32 H322 CDL sing 153 n n C32 H321 CDL sing 154 n n C33 C34 CDL sing 155 n n C33 H332 CDL sing 156 n n C33 H331 CDL sing 157 n n C34 C35 CDL sing 158 n n C34 H342 CDL sing 159 n n C34 H341 CDL sing 160 n n C35 C36 CDL sing 161 n n C35 H352 CDL sing 162 n n C35 H351 CDL sing 163 n n C36 C37 CDL sing 164 n n C36 H362 CDL sing 165 n n C36 H361 CDL sing 166 n n C37 C38 CDL sing 167 n n C37 H372 CDL sing 168 n n C37 H371 CDL sing 169 n n C38 C39 CDL sing 170 n n C38 H382 CDL sing 171 n n C38 H381 CDL sing 172 n n C39 C40 CDL sing 173 n n C39 H392 CDL sing 174 n n C39 H391 CDL sing 175 n n C40 C41 CDL sing 176 n n C40 H402 CDL sing 177 n n C40 H401 CDL sing 178 n n C41 C42 CDL sing 179 n n C41 H412 CDL sing 180 n n C41 H411 CDL sing 181 n n C42 C43 CDL sing 182 n n C42 H422 CDL sing 183 n n C42 H421 CDL sing 184 n n C43 C44 CDL sing 185 n n C43 H432 CDL sing 186 n n C43 H431 CDL sing 187 n n C44 C45 CDL sing 188 n n C44 H442 CDL sing 189 n n C44 H441 CDL sing 190 n n C45 C46 CDL sing 191 n n C45 H452 CDL sing 192 n n C45 H451 CDL sing 193 n n C46 C47 CDL sing 194 n n C46 H462 CDL sing 195 n n C46 H461 CDL sing 196 n n C47 H473 CDL sing 197 n n C47 H472 CDL sing 198 n n C47 H471 CDL sing 199 n n CB2 OB2 CDL sing 200 n n CB2 HB22 CDL sing 201 n n CB2 HB21 CDL sing 202 n n OB2 PB2 CDL sing 203 n n PB2 OB3 CDL doub 204 n n PB2 OB4 CDL sing 205 n n PB2 OB5 CDL sing 206 n n OB5 CB3 CDL sing 207 n n CB3 CB4 CDL sing 208 n n CB3 HB32 CDL sing 209 n n CB3 HB31 CDL sing 210 n n CB4 OB6 CDL sing 211 n n CB4 CB6 CDL sing 212 n n CB4 HB4 CDL sing 213 n n OB6 CB5 CDL sing 214 n n CB5 OB7 CDL doub 215 n n CB5 C51 CDL sing 216 n n C51 C52 CDL sing 217 n n C51 H512 CDL sing 218 n n C51 H511 CDL sing 219 n n C52 C53 CDL sing 220 n n C52 H522 CDL sing 221 n n C52 H521 CDL sing 222 n n C53 C54 CDL sing 223 n n C53 H532 CDL sing 224 n n C53 H531 CDL sing 225 n n C54 C55 CDL sing 226 n n C54 H542 CDL sing 227 n n C54 H541 CDL sing 228 n n C55 C56 CDL sing 229 n n C55 H552 CDL sing 230 n n C55 H551 CDL sing 231 n n C56 C57 CDL sing 232 n n C56 H562 CDL sing 233 n n C56 H561 CDL sing 234 n n C57 C58 CDL sing 235 n n C57 H572 CDL sing 236 n n C57 H571 CDL sing 237 n n C58 C59 CDL sing 238 n n C58 H582 CDL sing 239 n n C58 H581 CDL sing 240 n n C59 C60 CDL sing 241 n n C59 H592 CDL sing 242 n n C59 H591 CDL sing 243 n n C60 C61 CDL sing 244 n n C60 H602 CDL sing 245 n n C60 H601 CDL sing 246 n n C61 C62 CDL sing 247 n n C61 H612 CDL sing 248 n n C61 H611 CDL sing 249 n n C62 C63 CDL sing 250 n n C62 H622 CDL sing 251 n n C62 H621 CDL sing 252 n n C63 C64 CDL sing 253 n n C63 H632 CDL sing 254 n n C63 H631 CDL sing 255 n n C64 C65 CDL sing 256 n n C64 H642 CDL sing 257 n n C64 H641 CDL sing 258 n n C65 C66 CDL sing 259 n n C65 H652 CDL sing 260 n n C65 H651 CDL sing 261 n n C66 C67 CDL sing 262 n n C66 H662 CDL sing 263 n n C66 H661 CDL sing 264 n n C67 H673 CDL sing 265 n n C67 H672 CDL sing 266 n n C67 H671 CDL sing 267 n n CB6 OB8 CDL sing 268 n n CB6 HB62 CDL sing 269 n n CB6 HB61 CDL sing 270 n n OB8 CB7 CDL sing 271 n n CB7 OB9 CDL doub 272 n n CB7 C71 CDL sing 273 n n C71 C72 CDL sing 274 n n C71 H712 CDL sing 275 n n C71 H711 CDL sing 276 n n C72 C73 CDL sing 277 n n C72 H722 CDL sing 278 n n C72 H721 CDL sing 279 n n C73 C74 CDL sing 280 n n C73 H732 CDL sing 281 n n C73 H731 CDL sing 282 n n C74 C75 CDL sing 283 n n C74 H742 CDL sing 284 n n C74 H741 CDL sing 285 n n C75 C76 CDL sing 286 n n C75 H752 CDL sing 287 n n C75 H751 CDL sing 288 n n C76 C77 CDL sing 289 n n C76 H762 CDL sing 290 n n C76 H761 CDL sing 291 n n C77 C78 CDL sing 292 n n C77 H772 CDL sing 293 n n C77 H771 CDL sing 294 n n C78 C79 CDL sing 295 n n C78 H782 CDL sing 296 n n C78 H781 CDL sing 297 n n C79 C80 CDL sing 298 n n C79 H792 CDL sing 299 n n C79 H791 CDL sing 300 n n C80 C81 CDL sing 301 n n C80 H802 CDL sing 302 n n C80 H801 CDL sing 303 n n C81 C82 CDL sing 304 n n C81 H812 CDL sing 305 n n C81 H811 CDL sing 306 n n C82 C83 CDL sing 307 n n C82 H822 CDL sing 308 n n C82 H821 CDL sing 309 n n C83 C84 CDL sing 310 n n C83 H832 CDL sing 311 n n C83 H831 CDL sing 312 n n C84 C85 CDL sing 313 n n C84 H842 CDL sing 314 n n C84 H841 CDL sing 315 n n C85 C86 CDL sing 316 n n C85 H852 CDL sing 317 n n C85 H851 CDL sing 318 n n C86 C87 CDL sing 319 n n C86 H862 CDL sing 320 n n C86 H861 CDL sing 321 n n C87 H873 CDL sing 322 n n C87 H872 CDL sing 323 n n C87 H871 CDL sing 324 n n # _atom_sites.entry_id 4C9J _atom_sites.fract_transf_matrix[1][1] 0.024823 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0096 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006487 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CXT A 1 401 401 CXT CXT . D 3 CDL A 1 800 800 CDL CDL . E 3 CDL A 1 801 801 CDL CDL . F 3 CDL A 1 802 802 CDL CDL . G 2 CXT B 1 401 401 CXT CXT . H 3 CDL B 1 800 800 CDL CDL . I 3 CDL B 1 801 801 CDL CDL . J 3 CDL B 1 802 802 CDL CDL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CDL . . . I 3 13.375 -12.26 202.336 1 43.28 ? C1 CDL 801 B 1 HETATM 2 O O1 CDL . . . I 3 12.712 -13.527 202.263 1 87.94 ? O1 CDL 801 B 1 HETATM 3 C CA2 CDL . . . I 3 14.718 -12.346 201.625 1 57.94 ? CA2 CDL 801 B 1 HETATM 4 O OA2 CDL . . . I 3 15.042 -11.044 201.151 1 72.38 ? OA2 CDL 801 B 1 HETATM 5 P PA1 CDL . . . I 3 15.983 -10.845 199.861 1 63.97 ? PA1 CDL 801 B 1 HETATM 6 O OA3 CDL . . . I 3 17.086 -9.879 200.223 1 42.31 ? OA3 CDL 801 B 1 HETATM 7 O OA4 CDL . . . I 3 16.315 -12.202 199.287 1 34.55 ? OA4 CDL 801 B 1 HETATM 8 O OA5 CDL . . . I 3 14.948 -10.098 198.881 1 58.42 ? OA5 CDL 801 B 1 HETATM 9 C CA3 CDL . . . I 3 15.263 -9.814 197.522 1 49.12 ? CA3 CDL 801 B 1 HETATM 10 C CA4 CDL . . . I 3 13.958 -9.727 196.74 1 59.57 ? CA4 CDL 801 B 1 HETATM 11 O OA6 CDL . . . I 3 14.204 -9.187 195.444 1 69.9 ? OA6 CDL 801 B 1 HETATM 12 C CA5 CDL . . . I 3 13.439 -9.881 194.42 1 62.56 ? CA5 CDL 801 B 1 HETATM 13 O OA7 CDL . . . I 3 13.074 -11.027 194.623 1 69.68 ? OA7 CDL 801 B 1 HETATM 14 C C11 CDL . . . I 3 13.101 -9.179 193.127 1 61.05 ? C11 CDL 801 B 1 HETATM 15 C C12 CDL . . . I 3 12.506 -7.812 193.439 1 54.76 ? C12 CDL 801 B 1 HETATM 16 C C13 CDL . . . I 3 12.116 -7.085 192.157 1 69.22 ? C13 CDL 801 B 1 HETATM 17 C CA6 CDL . . . I 3 12.976 -8.824 197.477 1 65.18 ? CA6 CDL 801 B 1 HETATM 18 O OA8 CDL . . . I 3 13.169 -7.474 197.061 1 68.04 ? OA8 CDL 801 B 1 HETATM 19 C CA7 CDL . . . I 3 12.38 -6.409 197.658 1 83.8 ? CA7 CDL 801 B 1 HETATM 20 O OA9 CDL . . . I 3 11.702 -6.649 198.644 1 75.96 ? OA9 CDL 801 B 1 HETATM 21 C C31 CDL . . . I 3 12.399 -5.024 197.056 1 90.97 ? C31 CDL 801 B 1 HETATM 22 C CB2 CDL . . . I 3 13.605 -11.886 203.793 1 67.67 ? CB2 CDL 801 B 1 HETATM 23 O OB2 CDL . . . I 3 12.395 -11.403 204.367 1 84.09 ? OB2 CDL 801 B 1 HETATM 24 P PB2 CDL . . . I 3 12.193 -11.435 205.962 1 62.81 ? PB2 CDL 801 B 1 HETATM 25 O OB3 CDL . . . I 3 13.542 -11.617 206.618 1 49.18 ? OB3 CDL 801 B 1 HETATM 26 O OB4 CDL . . . I 3 11.063 -12.387 206.272 1 70.19 ? OB4 CDL 801 B 1 HETATM 27 O OB5 CDL . . . I 3 11.688 -9.934 206.236 1 62.34 ? OB5 CDL 801 B 1 HETATM 28 C CB3 CDL . . . I 3 11.814 -9.336 207.523 1 94.59 ? CB3 CDL 801 B 1 HETATM 29 C CB4 CDL . . . I 3 12.229 -7.888 207.299 1 106.28 ? CB4 CDL 801 B 1 HETATM 30 O OB6 CDL . . . I 3 12.195 -7.169 208.53 1 101.73 ? OB6 CDL 801 B 1 HETATM 31 C CB5 CDL . . . I 3 13.529 -6.773 208.954 1 101.33 ? CB5 CDL 801 B 1 HETATM 32 O OB7 CDL . . . I 3 14.489 -7.415 208.554 1 97.25 ? OB7 CDL 801 B 1 HETATM 33 C C51 CDL . . . I 3 13.709 -5.576 209.861 1 90.69 ? C51 CDL 801 B 1 HETATM 34 C C52 CDL . . . I 3 14.829 -5.822 210.867 1 40.03 ? C52 CDL 801 B 1 HETATM 35 C C53 CDL . . . I 3 16.189 -5.411 210.313 1 45.6 ? C53 CDL 801 B 1 HETATM 36 C CB6 CDL . . . I 3 11.259 -7.263 206.304 1 106.66 ? CB6 CDL 801 B 1 HETATM 37 O OB8 CDL . . . I 3 11.974 -6.425 205.399 1 116.37 ? OB8 CDL 801 B 1 HETATM 38 C CB7 CDL . . . I 3 11.414 -6.139 204.088 1 108.63 ? CB7 CDL 801 B 1 HETATM 39 O OB9 CDL . . . I 3 10.431 -6.758 203.716 1 89.85 ? OB9 CDL 801 B 1 HETATM 40 C C71 CDL . . . I 3 12.05 -5.095 203.2 1 92.97 ? C71 CDL 801 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 40 #