data_4C9W # _model_server_result.job_id adc2MId0U9eAjKZ98yxNqg _model_server_result.datetime_utc '2024-11-24 04:23:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4c9w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1158}' # _entry.id 4C9W # _exptl.entry_id 4C9W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 450.337 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-[(1R)-1-(2,6-dichloro-3-fluorophenyl)ethoxy]-5-(1-piperidin-4-yl-1H-pyrazol-4-yl)pyridin-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4C9W _cell.length_a 36.2 _cell.length_b 59.96 _cell.length_c 66.87 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4C9W _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -59.96 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H22 Cl2 F N5 O' _chem_comp.formula_weight 450.337 _chem_comp.id VGH _chem_comp.mon_nstd_flag . _chem_comp.name 3-[(1R)-1-(2,6-dichloro-3-fluorophenyl)ethoxy]-5-(1-piperidin-4-yl-1H-pyrazol-4-yl)pyridin-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms CRIZOTINIB # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL C13 VGH sing 380 n n C13 C3 VGH sing 381 n y C13 C17 VGH doub 382 n y C3 C2 VGH doub 383 n y C2 C12 VGH sing 384 n y C12 F VGH sing 385 n n C12 C18 VGH doub 386 n y C17 C18 VGH sing 387 n y C17 C21 VGH sing 388 n n C18 CL2 VGH sing 389 n n C21 C1 VGH sing 390 n n C21 O27 VGH sing 391 n n O27 C15 VGH sing 392 n n C15 C4 VGH doub 393 n y C15 C19 VGH sing 394 n y C4 C14 VGH sing 395 n y C19 N22 VGH sing 396 n n C19 N23 VGH doub 397 n y N23 C5 VGH sing 398 n y C5 C14 VGH doub 399 n y C14 C16 VGH sing 400 n y C16 C6 VGH sing 401 n y C16 C7 VGH doub 402 n y C6 N24 VGH doub 403 n y C7 N26 VGH sing 404 n y N26 N24 VGH sing 405 n y N26 C20 VGH sing 406 n n C20 C8 VGH sing 407 n n C20 C9 VGH sing 408 n n C8 C10 VGH sing 409 n n C10 N25 VGH sing 410 n n N25 C11 VGH sing 411 n n C11 C9 VGH sing 412 n n C3 H3 VGH sing 413 n n C2 H2 VGH sing 414 n n C21 H21 VGH sing 415 n n C1 H11C VGH sing 416 n n C1 H12C VGH sing 417 n n C1 H13C VGH sing 418 n n C4 H4 VGH sing 419 n n N22 H221 VGH sing 420 n n N22 H222 VGH sing 421 n n C5 H5 VGH sing 422 n n C6 H6 VGH sing 423 n n C7 H7 VGH sing 424 n n C20 H20 VGH sing 425 n n C8 H81C VGH sing 426 n n C8 H82C VGH sing 427 n n C9 H91C VGH sing 428 n n C9 H92C VGH sing 429 n n C10 H101 VGH sing 430 n n C10 H102 VGH sing 431 n n N25 H25 VGH sing 432 n n C11 H111 VGH sing 433 n n C11 H112 VGH sing 434 n n # _atom_sites.entry_id 4C9W _atom_sites.fract_transf_matrix[1][1] 0.027624 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016678 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014954 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 1157 1157 CL CL . C 3 VGH A 1 1158 1158 VGH VGH . D 4 SO4 A 1 1159 1159 SO4 SO4 . E 4 SO4 A 1 1160 1160 SO4 SO4 . F 4 SO4 A 1 1161 1161 SO4 SO4 . G 4 SO4 A 1 1162 1162 SO4 SO4 . H 4 SO4 A 1 1163 1163 SO4 SO4 . I 5 HOH A 1 2001 2001 HOH HOH . I 5 HOH A 2 2002 2002 HOH HOH . I 5 HOH A 3 2003 2003 HOH HOH . I 5 HOH A 4 2004 2004 HOH HOH . I 5 HOH A 5 2005 2005 HOH HOH . I 5 HOH A 6 2006 2006 HOH HOH . I 5 HOH A 7 2007 2007 HOH HOH . I 5 HOH A 8 2008 2008 HOH HOH . I 5 HOH A 9 2009 2009 HOH HOH . I 5 HOH A 10 2010 2010 HOH HOH . I 5 HOH A 11 2011 2011 HOH HOH . I 5 HOH A 12 2012 2012 HOH HOH . I 5 HOH A 13 2013 2013 HOH HOH . I 5 HOH A 14 2014 2014 HOH HOH . I 5 HOH A 15 2015 2015 HOH HOH . I 5 HOH A 16 2016 2016 HOH HOH . I 5 HOH A 17 2017 2017 HOH HOH . I 5 HOH A 18 2018 2018 HOH HOH . I 5 HOH A 19 2019 2019 HOH HOH . I 5 HOH A 20 2020 2020 HOH HOH . I 5 HOH A 21 2021 2021 HOH HOH . I 5 HOH A 22 2022 2022 HOH HOH . I 5 HOH A 23 2023 2023 HOH HOH . I 5 HOH A 24 2024 2024 HOH HOH . I 5 HOH A 25 2025 2025 HOH HOH . I 5 HOH A 26 2026 2026 HOH HOH . I 5 HOH A 27 2027 2027 HOH HOH . I 5 HOH A 28 2028 2028 HOH HOH . I 5 HOH A 29 2029 2029 HOH HOH . I 5 HOH A 30 2030 2030 HOH HOH . I 5 HOH A 31 2031 2031 HOH HOH . I 5 HOH A 32 2032 2032 HOH HOH . I 5 HOH A 33 2033 2033 HOH HOH . I 5 HOH A 34 2034 2034 HOH HOH . I 5 HOH A 35 2035 2035 HOH HOH . I 5 HOH A 36 2036 2036 HOH HOH . I 5 HOH A 37 2037 2037 HOH HOH . I 5 HOH A 38 2038 2038 HOH HOH . I 5 HOH A 39 2039 2039 HOH HOH . I 5 HOH A 40 2040 2040 HOH HOH . I 5 HOH A 41 2041 2041 HOH HOH . I 5 HOH A 42 2042 2042 HOH HOH . I 5 HOH A 43 2043 2043 HOH HOH . I 5 HOH A 44 2044 2044 HOH HOH . I 5 HOH A 45 2045 2045 HOH HOH . I 5 HOH A 46 2046 2046 HOH HOH . I 5 HOH A 47 2047 2047 HOH HOH . I 5 HOH A 48 2048 2048 HOH HOH . I 5 HOH A 49 2049 2049 HOH HOH . I 5 HOH A 50 2050 2050 HOH HOH . I 5 HOH A 51 2051 2051 HOH HOH . I 5 HOH A 52 2052 2052 HOH HOH . I 5 HOH A 53 2053 2053 HOH HOH . I 5 HOH A 54 2054 2054 HOH HOH . I 5 HOH A 55 2055 2055 HOH HOH . I 5 HOH A 56 2056 2056 HOH HOH . I 5 HOH A 57 2057 2057 HOH HOH . I 5 HOH A 58 2058 2058 HOH HOH . I 5 HOH A 59 2059 2059 HOH HOH . I 5 HOH A 60 2060 2060 HOH HOH . I 5 HOH A 61 2061 2061 HOH HOH . I 5 HOH A 62 2062 2062 HOH HOH . I 5 HOH A 63 2063 2063 HOH HOH . I 5 HOH A 64 2064 2064 HOH HOH . I 5 HOH A 65 2065 2065 HOH HOH . I 5 HOH A 66 2066 2066 HOH HOH . I 5 HOH A 67 2067 2067 HOH HOH . I 5 HOH A 68 2068 2068 HOH HOH . I 5 HOH A 69 2069 2069 HOH HOH . I 5 HOH A 70 2070 2070 HOH HOH . I 5 HOH A 71 2071 2071 HOH HOH . I 5 HOH A 72 2072 2072 HOH HOH . I 5 HOH A 73 2073 2073 HOH HOH . I 5 HOH A 74 2074 2074 HOH HOH . I 5 HOH A 75 2075 2075 HOH HOH . I 5 HOH A 76 2076 2076 HOH HOH . I 5 HOH A 77 2077 2077 HOH HOH . I 5 HOH A 78 2078 2078 HOH HOH . I 5 HOH A 79 2079 2079 HOH HOH . I 5 HOH A 80 2080 2080 HOH HOH . I 5 HOH A 81 2081 2081 HOH HOH . I 5 HOH A 82 2082 2082 HOH HOH . I 5 HOH A 83 2083 2083 HOH HOH . I 5 HOH A 84 2084 2084 HOH HOH . I 5 HOH A 85 2085 2085 HOH HOH . I 5 HOH A 86 2086 2086 HOH HOH . I 5 HOH A 87 2087 2087 HOH HOH . I 5 HOH A 88 2088 2088 HOH HOH . I 5 HOH A 89 2089 2089 HOH HOH . I 5 HOH A 90 2090 2090 HOH HOH . I 5 HOH A 91 2091 2091 HOH HOH . I 5 HOH A 92 2092 2092 HOH HOH . I 5 HOH A 93 2093 2093 HOH HOH . I 5 HOH A 94 2094 2094 HOH HOH . I 5 HOH A 95 2095 2095 HOH HOH . I 5 HOH A 96 2096 2096 HOH HOH . I 5 HOH A 97 2097 2097 HOH HOH . I 5 HOH A 98 2098 2098 HOH HOH . I 5 HOH A 99 2099 2099 HOH HOH . I 5 HOH A 100 2100 2100 HOH HOH . I 5 HOH A 101 2101 2101 HOH HOH . I 5 HOH A 102 2102 2102 HOH HOH . I 5 HOH A 103 2103 2103 HOH HOH . I 5 HOH A 104 2104 2104 HOH HOH . I 5 HOH A 105 2105 2105 HOH HOH . I 5 HOH A 106 2106 2106 HOH HOH . I 5 HOH A 107 2107 2107 HOH HOH . I 5 HOH A 108 2108 2108 HOH HOH . I 5 HOH A 109 2109 2109 HOH HOH . I 5 HOH A 110 2110 2110 HOH HOH . I 5 HOH A 111 2111 2111 HOH HOH . I 5 HOH A 112 2112 2112 HOH HOH . I 5 HOH A 113 2113 2113 HOH HOH . I 5 HOH A 114 2114 2114 HOH HOH . I 5 HOH A 115 2115 2115 HOH HOH . I 5 HOH A 116 2116 2116 HOH HOH . I 5 HOH A 117 2117 2117 HOH HOH . I 5 HOH A 118 2118 2118 HOH HOH . I 5 HOH A 119 2119 2119 HOH HOH . I 5 HOH A 120 2120 2120 HOH HOH . I 5 HOH A 121 2121 2121 HOH HOH . I 5 HOH A 122 2122 2122 HOH HOH . I 5 HOH A 123 2123 2123 HOH HOH . I 5 HOH A 124 2124 2124 HOH HOH . I 5 HOH A 125 2125 2125 HOH HOH . I 5 HOH A 126 2126 2126 HOH HOH . I 5 HOH A 127 2127 2127 HOH HOH . I 5 HOH A 128 2128 2128 HOH HOH . I 5 HOH A 129 2129 2129 HOH HOH . I 5 HOH A 130 2130 2130 HOH HOH . I 5 HOH A 131 2131 2131 HOH HOH . I 5 HOH A 132 2132 2132 HOH HOH . I 5 HOH A 133 2133 2133 HOH HOH . I 5 HOH A 134 2134 2134 HOH HOH . I 5 HOH A 135 2135 2135 HOH HOH . I 5 HOH A 136 2136 2136 HOH HOH . I 5 HOH A 137 2137 2137 HOH HOH . I 5 HOH A 138 2138 2138 HOH HOH . I 5 HOH A 139 2139 2139 HOH HOH . I 5 HOH A 140 2140 2140 HOH HOH . I 5 HOH A 141 2141 2141 HOH HOH . I 5 HOH A 142 2142 2142 HOH HOH . I 5 HOH A 143 2143 2143 HOH HOH . I 5 HOH A 144 2144 2144 HOH HOH . I 5 HOH A 145 2145 2145 HOH HOH . I 5 HOH A 146 2146 2146 HOH HOH . I 5 HOH A 147 2147 2147 HOH HOH . I 5 HOH A 148 2148 2148 HOH HOH . I 5 HOH A 149 2149 2149 HOH HOH . I 5 HOH A 150 2150 2150 HOH HOH . I 5 HOH A 151 2151 2151 HOH HOH . I 5 HOH A 152 2152 2152 HOH HOH . I 5 HOH A 153 2153 2153 HOH HOH . I 5 HOH A 154 2154 2154 HOH HOH . I 5 HOH A 155 2155 2155 HOH HOH . I 5 HOH A 156 2156 2156 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CL CL VGH . . . C 3 -17.644 -12.306 12.826 1 37.86 ? CL VGH 1158 A 1 HETATM 2 C C13 VGH . . . C 3 -16.478 -12.345 11.59 1 31.65 ? C13 VGH 1158 A 1 HETATM 3 C C3 VGH . . . C 3 -16.726 -11.595 10.439 1 33.84 ? C3 VGH 1158 A 1 HETATM 4 C C2 VGH . . . C 3 -15.795 -11.588 9.409 1 32.28 ? C2 VGH 1158 A 1 HETATM 5 C C12 VGH . . . C 3 -14.624 -12.337 9.545 1 37.15 ? C12 VGH 1158 A 1 HETATM 6 F F VGH . . . C 3 -13.677 -12.385 8.578 1 41.12 ? F VGH 1158 A 1 HETATM 7 C C17 VGH . . . C 3 -15.31 -13.114 11.715 1 27.86 ? C17 VGH 1158 A 1 HETATM 8 C C18 VGH . . . C 3 -14.391 -13.091 10.676 1 32.52 ? C18 VGH 1158 A 1 HETATM 9 CL CL2 VGH . . . C 3 -12.947 -13.952 10.729 1 36.36 ? CL2 VGH 1158 A 1 HETATM 10 C C21 VGH . . . C 3 -14.982 -13.876 12.837 1 24.12 ? C21 VGH 1158 A 1 HETATM 11 C C1 VGH . . . C 3 -16.071 -13.944 13.886 1 29.43 ? C1 VGH 1158 A 1 HETATM 12 O O27 VGH . . . C 3 -14.579 -15.277 12.544 1 23.72 ? O27 VGH 1158 A 1 HETATM 13 C C15 VGH . . . C 3 -15.44 -16.203 11.99 1 22.93 ? C15 VGH 1158 A 1 HETATM 14 C C4 VGH . . . C 3 -16.753 -15.93 11.552 1 24.66 ? C4 VGH 1158 A 1 HETATM 15 C C19 VGH . . . C 3 -14.926 -17.498 11.837 1 20.51 ? C19 VGH 1158 A 1 HETATM 16 N N22 VGH . . . C 3 -13.671 -17.756 12.255 1 17.58 ? N22 VGH 1158 A 1 HETATM 17 N N23 VGH . . . C 3 -15.692 -18.464 11.307 1 18.82 ? N23 VGH 1158 A 1 HETATM 18 C C5 VGH . . . C 3 -17 -18.21 10.862 1 22.94 ? C5 VGH 1158 A 1 HETATM 19 C C14 VGH . . . C 3 -17.554 -16.931 10.991 1 22.76 ? C14 VGH 1158 A 1 HETATM 20 C C16 VGH . . . C 3 -18.817 -16.682 10.568 1 30.26 ? C16 VGH 1158 A 1 HETATM 21 C C6 VGH . . . C 3 -19.819 -17.549 10.553 1 33.02 ? C6 VGH 1158 A 1 HETATM 22 C C7 VGH . . . C 3 -19.299 -15.537 10.075 1 34.32 ? C7 VGH 1158 A 1 HETATM 23 N N26 VGH . . . C 3 -20.591 -15.744 9.775 1 36.33 ? N26 VGH 1158 A 1 HETATM 24 N N24 VGH . . . C 3 -20.887 -16.909 10.061 1 37.46 ? N24 VGH 1158 A 1 HETATM 25 C C20 VGH . . . C 3 -21.569 -14.778 9.189 1 39.44 ? C20 VGH 1158 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 674 _model_server_stats.encode_time_ms 25 _model_server_stats.element_count 25 #