data_4CA4
#
_model_server_result.job_id            euCyx_eYcMt-9POxaMHtwQ 
_model_server_result.datetime_utc      '2025-02-18 01:44:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ca4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":201}' 
#
_entry.id    4CA4 
#
_exptl.entry_id    4CA4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              278.342 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'heptyl alpha-D-mannopyranoside' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4CA4 
_cell.length_a            89.85 
_cell.length_b            89.85 
_cell.length_c            91.87 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4CA4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 3 A CYS 3 1_555 A SG CYS 44 A CYS 44 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf2 B SG CYS 3 B CYS 3 1_555 B SG CYS 44 B CYS 44 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.036 ? 
#
_chem_comp.formula           'C13 H26 O6' 
_chem_comp.formula_weight    278.342 
_chem_comp.id                KGM 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              'heptyl alpha-D-mannopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     'Heptyl Alpha-D-mannopyrannoside;heptyl alpha-D-mannoside;heptyl D-mannoside;heptyl mannoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C13 C12 KGM sing 173 n n 
C12 C11 KGM sing 174 n n 
C11 C10 KGM sing 175 n n 
C10 C9 KGM sing 176 n n 
C9 C8 KGM sing 177 n n 
C8 C7 KGM sing 178 n n 
C7 O1 KGM sing 179 n n 
O1 C1 KGM sing 180 n n 
C1 C2 KGM sing 181 n n 
C1 O5 KGM sing 182 n n 
C2 O2 KGM sing 183 n n 
C2 C3 KGM sing 184 n n 
C3 O3 KGM sing 185 n n 
C3 C4 KGM sing 186 n n 
C4 O4 KGM sing 187 n n 
C4 C5 KGM sing 188 n n 
C5 O5 KGM sing 189 n n 
C5 C6 KGM sing 190 n n 
C6 O6 KGM sing 191 n n 
C13 H131 KGM sing 192 n n 
C13 H132 KGM sing 193 n n 
C13 H133 KGM sing 194 n n 
C12 H121 KGM sing 195 n n 
C12 H122 KGM sing 196 n n 
C11 H111 KGM sing 197 n n 
C11 H112 KGM sing 198 n n 
C10 H101 KGM sing 199 n n 
C10 H102 KGM sing 200 n n 
C9 H91C KGM sing 201 n n 
C9 H92C KGM sing 202 n n 
C8 H81C KGM sing 203 n n 
C8 H82C KGM sing 204 n n 
C7 H71C KGM sing 205 n n 
C7 H72C KGM sing 206 n n 
C1 H1 KGM sing 207 n n 
C2 H2 KGM sing 208 n n 
O2 HO2 KGM sing 209 n n 
C3 H3 KGM sing 210 n n 
O3 HO3 KGM sing 211 n n 
C4 H4 KGM sing 212 n n 
O4 HO4 KGM sing 213 n n 
C5 H5 KGM sing 214 n n 
C6 H61 KGM sing 215 n n 
C6 H62 KGM sing 216 n n 
O6 HO6 KGM sing 217 n n 
#
_atom_sites.entry_id                     4CA4 
_atom_sites.fract_transf_matrix[1][1]    0.01113 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01113 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010885 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 KGM A 1 201 201 KGM KGM . 
D 2 KGM B 1 201 201 KGM KGM . 
E 3 HOH A 1 2001 2001 HOH HOH . 
E 3 HOH A 2 2002 2002 HOH HOH . 
E 3 HOH A 3 2003 2003 HOH HOH . 
E 3 HOH A 4 2004 2004 HOH HOH . 
E 3 HOH A 5 2005 2005 HOH HOH . 
E 3 HOH A 6 2006 2006 HOH HOH . 
E 3 HOH A 7 2007 2007 HOH HOH . 
E 3 HOH A 8 2008 2008 HOH HOH . 
E 3 HOH A 9 2009 2009 HOH HOH . 
E 3 HOH A 10 2010 2010 HOH HOH . 
E 3 HOH A 11 2011 2011 HOH HOH . 
E 3 HOH A 12 2012 2012 HOH HOH . 
E 3 HOH A 13 2013 2013 HOH HOH . 
E 3 HOH A 14 2014 2014 HOH HOH . 
E 3 HOH A 15 2015 2015 HOH HOH . 
E 3 HOH A 16 2016 2016 HOH HOH . 
E 3 HOH A 17 2017 2017 HOH HOH . 
E 3 HOH A 18 2018 2018 HOH HOH . 
E 3 HOH A 19 2019 2019 HOH HOH . 
E 3 HOH A 20 2020 2020 HOH HOH . 
E 3 HOH A 21 2021 2021 HOH HOH . 
E 3 HOH A 22 2022 2022 HOH HOH . 
E 3 HOH A 23 2023 2023 HOH HOH . 
E 3 HOH A 24 2024 2024 HOH HOH . 
E 3 HOH A 25 2025 2025 HOH HOH . 
E 3 HOH A 26 2026 2026 HOH HOH . 
E 3 HOH A 27 2027 2027 HOH HOH . 
E 3 HOH A 28 2028 2028 HOH HOH . 
E 3 HOH A 29 2029 2029 HOH HOH . 
E 3 HOH A 30 2030 2030 HOH HOH . 
E 3 HOH A 31 2031 2031 HOH HOH . 
E 3 HOH A 32 2032 2032 HOH HOH . 
E 3 HOH A 33 2033 2033 HOH HOH . 
E 3 HOH A 34 2034 2034 HOH HOH . 
E 3 HOH A 35 2035 2035 HOH HOH . 
F 3 HOH B 1 2001 2001 HOH HOH . 
F 3 HOH B 2 2002 2002 HOH HOH . 
F 3 HOH B 3 2003 2003 HOH HOH . 
F 3 HOH B 4 2004 2004 HOH HOH . 
F 3 HOH B 5 2005 2005 HOH HOH . 
F 3 HOH B 6 2006 2006 HOH HOH . 
F 3 HOH B 7 2007 2007 HOH HOH . 
F 3 HOH B 8 2008 2008 HOH HOH . 
F 3 HOH B 9 2009 2009 HOH HOH . 
F 3 HOH B 10 2010 2010 HOH HOH . 
F 3 HOH B 11 2011 2011 HOH HOH . 
F 3 HOH B 12 2012 2012 HOH HOH . 
F 3 HOH B 13 2013 2013 HOH HOH . 
F 3 HOH B 14 2014 2014 HOH HOH . 
F 3 HOH B 15 2015 2015 HOH HOH . 
F 3 HOH B 16 2016 2016 HOH HOH . 
F 3 HOH B 17 2017 2017 HOH HOH . 
F 3 HOH B 18 2018 2018 HOH HOH . 
F 3 HOH B 19 2019 2019 HOH HOH . 
F 3 HOH B 20 2020 2020 HOH HOH . 
F 3 HOH B 21 2021 2021 HOH HOH . 
F 3 HOH B 22 2022 2022 HOH HOH . 
F 3 HOH B 23 2023 2023 HOH HOH . 
F 3 HOH B 24 2024 2024 HOH HOH . 
F 3 HOH B 25 2025 2025 HOH HOH . 
F 3 HOH B 26 2026 2026 HOH HOH . 
F 3 HOH B 27 2027 2027 HOH HOH . 
F 3 HOH B 28 2028 2028 HOH HOH . 
F 3 HOH B 29 2029 2029 HOH HOH . 
F 3 HOH B 30 2030 2030 HOH HOH . 
F 3 HOH B 31 2031 2031 HOH HOH . 
F 3 HOH B 32 2032 2032 HOH HOH . 
F 3 HOH B 33 2033 2033 HOH HOH . 
F 3 HOH B 34 2034 2034 HOH HOH . 
F 3 HOH B 35 2035 2035 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O6 KGM . A . D 2 6.301 -35.272 -29.442 0.54 14.78 ? O6 KGM 201 B 1 
HETATM 2 O O6 KGM . B . D 2 6.369 -35.501 -29.653 0.33 14.61 ? O6 KGM 201 B 1 
HETATM 3 C C6 KGM . A . D 2 5.404 -36.117 -30.163 0.54 11.89 ? C6 KGM 201 B 1 
HETATM 4 C C6 KGM . B . D 2 5.295 -36.242 -30.235 0.33 12.03 ? C6 KGM 201 B 1 
HETATM 5 C C5 KGM . A . D 2 5.255 -37.488 -29.475 0.54 15.63 ? C5 KGM 201 B 1 
HETATM 6 C C5 KGM . B . D 2 5.129 -37.597 -29.532 0.33 15.67 ? C5 KGM 201 B 1 
HETATM 7 C C10 KGM . A . D 2 4.102 -39.372 -33.893 0.54 17.84 ? C10 KGM 201 B 1 
HETATM 8 C C10 KGM . B . D 2 1.712 -43.425 -31.191 0.33 30.25 ? C10 KGM 201 B 1 
HETATM 9 O O5 KGM . A . D 2 6.456 -38.336 -29.31 0.54 19.23 ? O5 KGM 201 B 1 
HETATM 10 O O5 KGM . B . D 2 6.257 -38.53 -29.572 0.33 18.8 ? O5 KGM 201 B 1 
HETATM 11 C C4 KGM . A . D 2 4.568 -37.343 -28.115 0.54 15.79 ? C4 KGM 201 B 1 
HETATM 12 C C4 KGM . B . D 2 4.831 -37.362 -28.039 0.33 15.98 ? C4 KGM 201 B 1 
HETATM 13 O O4 KGM . A . D 2 3.443 -36.463 -28.252 0.54 14.36 ? O4 KGM 201 B 1 
HETATM 14 O O4 KGM . B . D 2 3.76 -36.415 -27.944 0.33 13.94 ? O4 KGM 201 B 1 
HETATM 15 C C3 KGM . A . D 2 4.17 -38.754 -27.619 0.54 18.84 ? C3 KGM 201 B 1 
HETATM 16 C C3 KGM . B . D 2 4.468 -38.665 -27.293 0.33 19.22 ? C3 KGM 201 B 1 
HETATM 17 O O3 KGM . A . D 2 3.489 -38.69 -26.354 0.54 18.75 ? O3 KGM 201 B 1 
HETATM 18 O O3 KGM . B . D 2 4.165 -38.432 -25.909 0.33 18.67 ? O3 KGM 201 B 1 
HETATM 19 C C2 KGM . A . D 2 5.424 -39.635 -27.477 0.54 20.47 ? C2 KGM 201 B 1 
HETATM 20 C C2 KGM . B . D 2 5.678 -39.602 -27.435 0.33 20.14 ? C2 KGM 201 B 1 
HETATM 21 O O2 KGM . A . D 2 6.354 -39.076 -26.535 0.54 17.73 ? O2 KGM 201 B 1 
HETATM 22 O O2 KGM . B . D 2 6.739 -38.867 -26.827 0.33 16.53 ? O2 KGM 201 B 1 
HETATM 23 C C1 KGM . A . D 2 6.142 -39.698 -28.813 0.54 23.53 ? C1 KGM 201 B 1 
HETATM 24 C C1 KGM . B . D 2 5.971 -39.86 -28.931 0.33 23.19 ? C1 KGM 201 B 1 
HETATM 25 O O1 KGM . A . D 2 5.285 -40.247 -29.817 0.54 27.78 ? O1 KGM 201 B 1 
HETATM 26 O O1 KGM . B . D 2 4.837 -40.656 -29.575 0.33 27.07 ? O1 KGM 201 B 1 
HETATM 27 C C7 KGM . A . D 2 6.179 -40.42 -30.917 0.54 19.9 ? C7 KGM 201 B 1 
HETATM 28 C C7 KGM . B . D 2 3.444 -40.324 -29.784 0.33 23.47 ? C7 KGM 201 B 1 
HETATM 29 C C8 KGM . A . D 2 5.476 -40.53 -32.258 0.54 17.77 ? C8 KGM 201 B 1 
HETATM 30 C C8 KGM . B . D 2 2.495 -41.5 -29.954 0.33 22.25 ? C8 KGM 201 B 1 
HETATM 31 C C9 KGM . A . D 2 4.698 -39.254 -32.505 0.54 9.7 ? C9 KGM 201 B 1 
HETATM 32 C C9 KGM . B . D 2 2.82 -42.375 -31.158 0.33 30.97 ? C9 KGM 201 B 1 
HETATM 33 C C13 KGM . A . D 2 1.95 -39.282 -35.752 0.54 16.55 ? C13 KGM 201 B 1 
HETATM 34 C C13 KGM . B . D 2 0.694 -46.079 -31.253 0.33 15.27 ? C13 KGM 201 B 1 
HETATM 35 C C12 KGM . A . D 2 2.675 -40.599 -35.441 0.54 25.16 ? C12 KGM 201 B 1 
HETATM 36 C C12 KGM . B . D 2 0.536 -45.221 -30.004 0.33 22.41 ? C12 KGM 201 B 1 
HETATM 37 C C11 KGM . A . D 2 3.181 -40.577 -33.999 0.54 23.92 ? C11 KGM 201 B 1 
HETATM 38 C C11 KGM . B . D 2 1.706 -44.251 -29.905 0.33 29.42 ? C11 KGM 201 B 1 
#
_model_server_stats.io_time_ms              44 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           333 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           38 
#