data_4CAK # _model_server_result.job_id XEqjQtjQ6xybEs2COxU_oQ _model_server_result.datetime_utc '2024-11-04 20:08:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4cak # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":3015}' # _entry.id 4CAK # _exptl.entry_id 4CAK _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 7 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4CAK _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CAK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 H N N ? 7 I N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide 5 oligosaccharide 6 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 4 ? 4 4 3 MAN BMA C1 O1 . O3 HO3 . sing 5 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 6 ? 5 3 2 BMA NAG C1 O1 . O4 HO4 . sing 7 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing 8 ? 6 3 2 BMA NAG C1 O1 . O4 HO4 . sing 9 ? 6 4 3 MAN BMA C1 O1 . O3 HO3 . sing 10 ? 6 5 4 MAN MAN C1 O1 . O2 HO2 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG B 3099 NAG 3 n C NAG 2 C 2 NAG B 3100 NAG 4 n D NAG 1 D 1 NAG B 3320 NAG 4 n D NAG 2 D 2 NAG B 3321 NAG 4 n D BMA 3 D 3 BMA B 3322 BMA 4 n D MAN 4 D 4 MAN B 3323 MAN 5 n E NAG 1 E 1 NAG B 3371 NAG 5 n E NAG 2 E 2 NAG B 3372 NAG 5 n E BMA 3 E 3 BMA B 3373 BMA 3 n F NAG 1 F 1 NAG B 3452 NAG 3 n F NAG 2 F 2 NAG B 3453 NAG 6 n G NAG 1 G 1 NAG B 3559 NAG 6 n G NAG 2 G 2 NAG B 3560 NAG 6 n G BMA 3 G 3 BMA B 3561 BMA 6 n G MAN 4 G 4 MAN B 3562 MAN 6 n G MAN 5 G 5 MAN B 3563 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 56 A CYS 56 1_555 A SG CYS 65 A CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 107 A CYS 107 1_555 A SG CYS 130 A CYS 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf3 A SG CYS 146 A CYS 146 1_555 A SG CYS 167 A CYS 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 A SG CYS 473 A CYS 473 1_555 A SG CYS 484 A CYS 484 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 A SG CYS 490 A CYS 490 1_555 A SG CYS 545 A CYS 545 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf6 A SG CYS 602 A CYS 602 1_555 A SG CYS 608 A CYS 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf7 A SG CYS 674 A CYS 674 1_555 A SG CYS 687 A CYS 687 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf8 A SG CYS 826 A CYS 826 1_555 A SG CYS 890 A CYS 890 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf9 A SG CYS 880 A CYS 880 1_555 A SG CYS 885 A CYS 885 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf10 B SG CYS 5 B CYS 5 1_555 B SG CYS 23 B CYS 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf11 B SG CYS 16 B CYS 16 1_555 B SG CYS 38 B CYS 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf12 B SG CYS 26 B CYS 26 1_555 B SG CYS 49 B CYS 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf13 B SG CYS 177 B CYS 177 1_555 B SG CYS 184 B CYS 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf14 B SG CYS 374 B CYS 374 1_555 B SG CYS 386 B CYS 386 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf15 B SG CYS 406 B CYS 406 1_555 B SG CYS 433 B CYS 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf16 B SG CYS 437 B CYS 437 1_555 B SG CYS 457 B CYS 457 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf17 B SG CYS 448 B CYS 448 1_555 B SG CYS 460 B CYS 460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf18 B SG CYS 462 B CYS 462 1_555 B SG CYS 471 B CYS 471 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf19 B SG CYS 473 B CYS 473 1_555 B SG CYS 503 B CYS 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf20 B SG CYS 486 B CYS 486 1_555 B SG CYS 501 B CYS 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf21 B SG CYS 495 B CYS 495 1_555 B SG CYS 506 B CYS 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf22 B SG CYS 508 B CYS 508 1_555 B SG CYS 521 B CYS 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf23 B SG CYS 523 B CYS 523 1_555 B SG CYS 544 B CYS 544 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf24 B SG CYS 528 B CYS 528 1_555 B SG CYS 542 B CYS 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf25 B SG CYS 536 B CYS 536 1_555 B SG CYS 547 B CYS 547 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf26 B SG CYS 560 B CYS 560 1_555 B SG CYS 583 B CYS 583 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf27 B SG CYS 567 B CYS 567 1_555 B SG CYS 581 B CYS 581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf28 B SG CYS 575 B CYS 575 1_555 B SG CYS 586 B CYS 586 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf29 B SG CYS 588 B CYS 588 1_555 B SG CYS 598 B CYS 598 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf30 B SG CYS 601 B CYS 601 1_555 B SG CYS 604 B CYS 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf31 B SG CYS 608 B CYS 608 1_555 B SG CYS 655 B CYS 655 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf32 B SG CYS 614 B CYS 614 1_555 B SG CYS 635 B CYS 635 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf33 B SG CYS 617 B CYS 617 1_555 B SG CYS 631 B CYS 631 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf34 B SG CYS 663 B CYS 663 1_555 B SG CYS 687 B CYS 687 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 A ND2 ASN 15 A ASN 15 1_555 H C1 NAG . A NAG 3015 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.488 ? covale ? covale2 A ND2 ASN 15 A ASN 15 1_555 H C1 NAG . A NAG 3015 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale3 A ND2 ASN 570 A ASN 570 1_555 I C1 NAG . A NAG 3570 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale4 A OG SER 572 A SER 572 1_555 I C8 NAG . A NAG 3570 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.294 ? covale ? covale5 B ND2 ASN 99 B ASN 99 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale6 B ND2 ASN 320 B ASN 320 1_555 D C1 NAG . D NAG 1 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale7 B ND2 ASN 371 B ASN 371 1_555 E C1 NAG . E NAG 1 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale8 B ND2 ASN 371 B ASN 371 1_555 E C1 NAG . E NAG 1 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale9 B ND2 ASN 452 B ASN 452 1_555 F C1 NAG . F NAG 1 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale10 B ND2 ASN 452 B ASN 452 1_555 F C1 NAG . F NAG 1 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale11 B ND2 ASN 559 B ASN 559 1_555 G C1 NAG . G NAG 1 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale12 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale13 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale14 D O4 NAG . D NAG 2 1_555 D C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale15 D O3 BMA . D BMA 3 1_555 D C1 MAN . D MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale16 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale17 E O4 NAG . E NAG 2 1_555 E C1 BMA . E BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale18 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale19 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale20 G O4 NAG . G NAG 2 1_555 G C1 BMA . G BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale21 G O3 BMA . G BMA 3 1_555 G C1 MAN . G MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale22 G O2 MAN . G MAN 4 1_555 G C1 MAN . G MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms ? # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4CAK _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 7 NAG A 1 3015 3015 NAG NAG . I 7 NAG A 1 3570 3570 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . H 7 285.653 225.618 184.15 1 52.87 ? C1 NAG 3015 A 1 HETATM 2 C C2 NAG . . . H 7 285.64 226.976 183.448 1 55.4 ? C2 NAG 3015 A 1 HETATM 3 C C3 NAG . . . H 7 284.631 226.99 182.304 1 55.69 ? C3 NAG 3015 A 1 HETATM 4 C C4 NAG . . . H 7 284.811 225.777 181.396 1 55.93 ? C4 NAG 3015 A 1 HETATM 5 C C5 NAG . . . H 7 284.897 224.493 182.217 1 56.2 ? C5 NAG 3015 A 1 HETATM 6 C C6 NAG . . . H 7 285.167 223.274 181.336 1 56.6 ? C6 NAG 3015 A 1 HETATM 7 C C7 NAG . . . H 7 286.268 228.908 184.815 1 57.93 ? C7 NAG 3015 A 1 HETATM 8 C C8 NAG . . . H 7 285.802 229.946 185.795 1 58.42 ? C8 NAG 3015 A 1 HETATM 9 N N2 NAG . . . H 7 285.346 228.04 184.395 1 56.58 ? N2 NAG 3015 A 1 HETATM 10 O O3 NAG . . . H 7 284.785 228.172 181.547 1 55.7 ? O3 NAG 3015 A 1 HETATM 11 O O4 NAG . . . H 7 283.725 225.696 180.5 1 55.91 ? O4 NAG 3015 A 1 HETATM 12 O O5 NAG . . . H 7 285.921 224.616 183.188 1 54.79 ? O5 NAG 3015 A 1 HETATM 13 O O6 NAG . . . H 7 286.414 223.402 180.688 1 56.31 ? O6 NAG 3015 A 1 HETATM 14 O O7 NAG . . . H 7 287.444 228.892 184.447 1 57.92 ? O7 NAG 3015 A 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #