data_4CB0 # _model_server_result.job_id hnTnJrpeBqUGvz6sIHxaPQ _model_server_result.datetime_utc '2025-02-22 00:44:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4cb0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 4CB0 # _exptl.entry_id 4CB0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4CB0 _cell.length_a 145.198 _cell.length_b 145.198 _cell.length_c 246.051 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CB0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLN 68 A GLN 227 1_555 A N MSE 69 A MSE 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale2 A C MSE 69 A MSE 228 1_555 A N VAL 70 A VAL 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C ARG 75 A ARG 234 1_555 A N MSE 76 A MSE 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 A C MSE 76 A MSE 235 1_555 A N MSE 77 A MSE 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 A C MSE 77 A MSE 236 1_555 A N THR 78 A THR 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale6 A C SER 127 A SER 286 1_555 A N MSE 128 A MSE 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale7 A C MSE 128 A MSE 287 1_555 A N ILE 129 A ILE 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale8 A C VAL 134 A VAL 293 1_555 A N MSE 135 A MSE 294 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale9 A C MSE 135 A MSE 294 1_555 A N SER 136 A SER 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale10 A C GLN 168 A GLN 327 1_555 A N MSE 169 A MSE 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale11 A C MSE 169 A MSE 328 1_555 A N GLY 170 A GLY 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale12 B C GLN 68 B GLN 227 1_555 B N MSE 69 B MSE 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale13 B C MSE 69 B MSE 228 1_555 B N VAL 70 B VAL 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale14 B C ARG 75 B ARG 234 1_555 B N MSE 76 B MSE 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale15 B C MSE 76 B MSE 235 1_555 B N MSE 77 B MSE 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale16 B C MSE 77 B MSE 236 1_555 B N THR 78 B THR 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale17 B C SER 127 B SER 286 1_555 B N MSE 128 B MSE 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale18 B C MSE 128 B MSE 287 1_555 B N ILE 129 B ILE 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale19 B C GLN 168 B GLN 327 1_555 B N MSE 169 B MSE 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale20 B C MSE 169 B MSE 328 1_555 B N GLY 170 B GLY 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 4CB0 _atom_sites.fract_transf_matrix[1][1] 0.006887 _atom_sites.fract_transf_matrix[1][2] 0.003976 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007953 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004064 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ATP A 1 501 501 ATP ATP . D 3 SO4 A 1 1456 1456 SO4 SO4 . E 3 SO4 A 1 1457 1457 SO4 SO4 . F 3 SO4 A 1 1458 1458 SO4 SO4 . G 3 SO4 A 1 1459 1459 SO4 SO4 . H 2 ATP B 1 501 501 ATP ATP . I 3 SO4 B 1 1456 1456 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . C 2 54.719 -44.014 2.502 1 258.97 ? PG ATP 501 A 1 HETATM 2 O O1G ATP . . . C 2 53.835 -45.11 3.057 1 259.89 ? O1G ATP 501 A 1 HETATM 3 O O2G ATP . . . C 2 54.026 -43.17 1.457 1 255.15 ? O2G ATP 501 A 1 HETATM 4 O O3G ATP . . . C 2 56.116 -44.47 2.123 1 256.53 ? O3G ATP 501 A 1 HETATM 5 P PB ATP . . . C 2 56.212 -42.98 4.721 1 179.72 ? PB ATP 501 A 1 HETATM 6 O O1B ATP . . . C 2 56.048 -41.884 5.739 1 182.86 ? O1B ATP 501 A 1 HETATM 7 O O2B ATP . . . C 2 57.429 -42.943 3.847 1 187.72 ? O2B ATP 501 A 1 HETATM 8 O O3B ATP . . . C 2 54.916 -43.012 3.756 1 177.85 ? O3B ATP 501 A 1 HETATM 9 P PA ATP . . . C 2 57.423 -45.222 5.785 1 167.88 ? PA ATP 501 A 1 HETATM 10 O O1A ATP . . . C 2 58.054 -45.443 4.412 1 153.36 ? O1A ATP 501 A 1 HETATM 11 O O2A ATP . . . C 2 57.092 -46.373 6.711 1 174.98 ? O2A ATP 501 A 1 HETATM 12 O O3A ATP . . . C 2 56.096 -44.363 5.526 1 203.77 ? O3A ATP 501 A 1 HETATM 13 O O5' ATP . . . C 2 58.165 -44.154 6.703 1 160.89 ? O5' ATP 501 A 1 HETATM 14 C C5' ATP . . . C 2 58.247 -44.337 8.108 1 164.62 ? C5' ATP 501 A 1 HETATM 15 C C4' ATP . . . C 2 58.802 -43.037 8.69 1 177.63 ? C4' ATP 501 A 1 HETATM 16 O O4' ATP . . . C 2 60.187 -43.203 9.024 1 179.64 ? O4' ATP 501 A 1 HETATM 17 C C3' ATP . . . C 2 58.734 -41.847 7.731 1 180.27 ? C3' ATP 501 A 1 HETATM 18 O O3' ATP . . . C 2 57.536 -41.076 7.798 1 187.69 ? O3' ATP 501 A 1 HETATM 19 C C2' ATP . . . C 2 59.859 -40.999 8.242 1 184.32 ? C2' ATP 501 A 1 HETATM 20 O O2' ATP . . . C 2 59.357 -40.28 9.368 1 187.78 ? O2' ATP 501 A 1 HETATM 21 C C1' ATP . . . C 2 60.901 -42.014 8.679 1 187.25 ? C1' ATP 501 A 1 HETATM 22 N N9 ATP . . . C 2 61.787 -42.2 7.486 1 195.54 ? N9 ATP 501 A 1 HETATM 23 C C8 ATP . . . C 2 61.566 -42.993 6.408 1 193.9 ? C8 ATP 501 A 1 HETATM 24 N N7 ATP . . . C 2 62.567 -42.889 5.493 1 190.47 ? N7 ATP 501 A 1 HETATM 25 C C5 ATP . . . C 2 63.458 -42.005 5.989 1 189.63 ? C5 ATP 501 A 1 HETATM 26 C C6 ATP . . . C 2 64.749 -41.434 5.557 1 199.72 ? C6 ATP 501 A 1 HETATM 27 N N6 ATP . . . C 2 65.311 -41.784 4.378 1 209.76 ? N6 ATP 501 A 1 HETATM 28 N N1 ATP . . . C 2 65.357 -40.551 6.372 1 202.41 ? N1 ATP 501 A 1 HETATM 29 C C2 ATP . . . C 2 64.815 -40.195 7.545 1 197.44 ? C2 ATP 501 A 1 HETATM 30 N N3 ATP . . . C 2 63.649 -40.667 8 1 182.4 ? N3 ATP 501 A 1 HETATM 31 C C4 ATP . . . C 2 62.941 -41.555 7.285 1 187.2 ? C4 ATP 501 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #