data_4CB5 # _model_server_result.job_id gIddC1ZklIEzOFOKEMdngA _model_server_result.datetime_utc '2024-11-29 00:38:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4cb5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1484}' # _entry.id 4CB5 # _exptl.entry_id 4CB5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 343.317 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 9-N-(3-CARBOXY-4-HYDROXYPHENYL)KETOMETHYL-7-N-METHYLGUANINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4CB5 _cell.length_a 82.17 _cell.length_b 82.17 _cell.length_c 54.84 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CB5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H15 N6 O4 1' _chem_comp.formula_weight 343.317 _chem_comp.id 93G _chem_comp.mon_nstd_flag . _chem_comp.name 9-N-(3-CARBOXY-4-HYDROXYPHENYL)KETOMETHYL-7-N-METHYLGUANINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 93G sing 1 n n N1 C6 93G sing 2 n n C2 N2 93G sing 3 n n C2 N3 93G doub 4 n n N3 C4 93G sing 5 n n C4 C5 93G doub 6 n y C4 N9 93G sing 7 n y C5 C6 93G sing 8 n n C5 N7 93G sing 9 n y C6 O6 93G doub 10 n n N7 C8 93G sing 11 n y N7 CM7 93G sing 12 n n C8 N9 93G doub 13 n y N9 C1' 93G sing 14 n n CG C2' 93G sing 15 n n CG CD1 93G doub 16 n y CG CD2 93G sing 17 n y OH CZ 93G sing 18 n n CN NN 93G sing 19 n n CN ON 93G doub 20 n n CN CE2 93G sing 21 n n CZ CE1 93G doub 22 n y CZ CE2 93G sing 23 n y C1' C2' 93G sing 24 n n C2' O2' 93G doub 25 n n CD1 CE1 93G sing 26 n y CD2 CE2 93G doub 27 n y N1 HN1 93G sing 28 n n N2 HN2 93G sing 29 n n N2 HN2A 93G sing 30 n n C8 H8 93G sing 31 n n OH HOH 93G sing 32 n n NN HNN 93G sing 33 n n NN HNNA 93G sing 34 n n C1' H1' 93G sing 35 n n C1' "H1'A" 93G sing 36 n n CD1 HD1 93G sing 37 n n CD2 HD2 93G sing 38 n n CE1 HE1 93G sing 39 n n CM7 HM7 93G sing 40 n n CM7 HM7A 93G sing 41 n n CM7 HM7B 93G sing 42 n n # _atom_sites.entry_id 4CB5 _atom_sites.fract_transf_matrix[1][1] 0.01217 _atom_sites.fract_transf_matrix[1][2] 0.007026 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014053 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018235 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 93G A 1 1484 1484 93G 93G . C 3 CL A 1 1485 1485 CL CL . D 3 CL A 1 1486 1486 CL CL . E 3 CL A 1 1487 1487 CL CL . F 4 HOH A 1 2001 2001 HOH HOH . F 4 HOH A 2 2002 2002 HOH HOH . F 4 HOH A 3 2003 2003 HOH HOH . F 4 HOH A 4 2004 2004 HOH HOH . F 4 HOH A 5 2005 2005 HOH HOH . F 4 HOH A 6 2006 2006 HOH HOH . F 4 HOH A 7 2007 2007 HOH HOH . F 4 HOH A 8 2008 2008 HOH HOH . F 4 HOH A 9 2009 2009 HOH HOH . F 4 HOH A 10 2010 2010 HOH HOH . F 4 HOH A 11 2011 2011 HOH HOH . F 4 HOH A 12 2012 2012 HOH HOH . F 4 HOH A 13 2013 2013 HOH HOH . F 4 HOH A 14 2014 2014 HOH HOH . F 4 HOH A 15 2015 2015 HOH HOH . F 4 HOH A 16 2016 2016 HOH HOH . F 4 HOH A 17 2017 2017 HOH HOH . F 4 HOH A 18 2018 2018 HOH HOH . F 4 HOH A 19 2019 2019 HOH HOH . F 4 HOH A 20 2020 2020 HOH HOH . F 4 HOH A 21 2021 2021 HOH HOH . F 4 HOH A 22 2022 2022 HOH HOH . F 4 HOH A 23 2023 2023 HOH HOH . F 4 HOH A 24 2024 2024 HOH HOH . F 4 HOH A 25 2025 2025 HOH HOH . F 4 HOH A 26 2026 2026 HOH HOH . F 4 HOH A 27 2027 2027 HOH HOH . F 4 HOH A 28 2028 2028 HOH HOH . F 4 HOH A 29 2029 2029 HOH HOH . F 4 HOH A 30 2030 2030 HOH HOH . F 4 HOH A 31 2031 2031 HOH HOH . F 4 HOH A 32 2032 2032 HOH HOH . F 4 HOH A 33 2033 2033 HOH HOH . F 4 HOH A 34 2034 2034 HOH HOH . F 4 HOH A 35 2035 2035 HOH HOH . F 4 HOH A 36 2036 2036 HOH HOH . F 4 HOH A 37 2037 2037 HOH HOH . F 4 HOH A 38 2038 2038 HOH HOH . F 4 HOH A 39 2039 2039 HOH HOH . F 4 HOH A 40 2040 2040 HOH HOH . F 4 HOH A 41 2041 2041 HOH HOH . F 4 HOH A 42 2042 2042 HOH HOH . F 4 HOH A 43 2043 2043 HOH HOH . F 4 HOH A 44 2044 2044 HOH HOH . F 4 HOH A 45 2045 2045 HOH HOH . F 4 HOH A 46 2046 2046 HOH HOH . F 4 HOH A 47 2047 2047 HOH HOH . F 4 HOH A 48 2048 2048 HOH HOH . F 4 HOH A 49 2049 2049 HOH HOH . F 4 HOH A 50 2050 2050 HOH HOH . F 4 HOH A 51 2051 2051 HOH HOH . F 4 HOH A 52 2052 2052 HOH HOH . F 4 HOH A 53 2053 2053 HOH HOH . F 4 HOH A 54 2054 2054 HOH HOH . F 4 HOH A 55 2055 2055 HOH HOH . F 4 HOH A 56 2056 2056 HOH HOH . F 4 HOH A 57 2057 2057 HOH HOH . F 4 HOH A 58 2058 2058 HOH HOH . F 4 HOH A 59 2059 2059 HOH HOH . F 4 HOH A 60 2060 2060 HOH HOH . F 4 HOH A 61 2061 2061 HOH HOH . F 4 HOH A 62 2062 2062 HOH HOH . F 4 HOH A 63 2063 2063 HOH HOH . F 4 HOH A 64 2064 2064 HOH HOH . F 4 HOH A 65 2065 2065 HOH HOH . F 4 HOH A 66 2066 2066 HOH HOH . F 4 HOH A 67 2067 2067 HOH HOH . F 4 HOH A 68 2068 2068 HOH HOH . F 4 HOH A 69 2069 2069 HOH HOH . F 4 HOH A 70 2070 2070 HOH HOH . F 4 HOH A 71 2071 2071 HOH HOH . F 4 HOH A 72 2072 2072 HOH HOH . F 4 HOH A 73 2073 2073 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 93G . . . B 2 -48.776 2.923 1.561 1 16.12 ? N1 93G 1484 A 1 HETATM 2 C C2 93G . . . B 2 -49.955 2.97 0.9 1 16.44 ? C2 93G 1484 A 1 HETATM 3 N N2 93G . . . B 2 -51.072 2.449 1.434 1 17.8 ? N2 93G 1484 A 1 HETATM 4 N N3 93G . . . B 2 -50 3.487 -0.358 1 16.89 ? N3 93G 1484 A 1 HETATM 5 C C4 93G . . . B 2 -48.886 3.982 -0.969 1 15.67 ? C4 93G 1484 A 1 HETATM 6 C C5 93G . . . B 2 -47.7 3.998 -0.278 1 14.41 ? C5 93G 1484 A 1 HETATM 7 C C6 93G . . . B 2 -47.638 3.424 1.004 1 17.5 ? C6 93G 1484 A 1 HETATM 8 O O6 93G . . . B 2 -46.513 3.391 1.774 1 15.84 ? O6 93G 1484 A 1 HETATM 9 N N7 93G . . . B 2 -46.737 4.586 -1.046 1 15.92 ? N7 93G 1484 A 1 HETATM 10 C C8 93G . . . B 2 -47.331 4.948 -2.213 1 18.16 ? C8 93G 1484 A 1 HETATM 11 N N9 93G . . . B 2 -48.641 4.593 -2.165 1 17.74 ? N9 93G 1484 A 1 HETATM 12 C CG 93G . . . B 2 -50.347 4.756 -5.61 1 27.26 ? CG 93G 1484 A 1 HETATM 13 O OH 93G . . . B 2 -53.379 5.018 -8.344 1 32.24 ? OH 93G 1484 A 1 HETATM 14 C CN 93G . . . B 2 -53.932 5.934 -5.765 1 43.09 ? CN 93G 1484 A 1 HETATM 15 N NN 93G . . . B 2 -54.743 6.561 -6.739 1 48.83 ? NN 93G 1484 A 1 HETATM 16 O ON 93G . . . B 2 -54.313 5.843 -4.612 1 49.75 ? ON 93G 1484 A 1 HETATM 17 C CZ 93G . . . B 2 -52.382 4.927 -7.452 1 32.35 ? CZ 93G 1484 A 1 HETATM 18 C C1' 93G . . . B 2 -49.655 4.839 -3.184 1 20.68 ? C1' 93G 1484 A 1 HETATM 19 C C2' 93G . . . B 2 -49.238 4.668 -4.625 1 27.8 ? C2' 93G 1484 A 1 HETATM 20 O O2' 93G . . . B 2 -48.079 4.483 -5.016 1 34.13 ? O2' 93G 1484 A 1 HETATM 21 C CD1 93G . . . B 2 -50.117 4.332 -6.913 1 30.78 ? CD1 93G 1484 A 1 HETATM 22 C CD2 93G . . . B 2 -51.581 5.281 -5.254 1 25.56 ? CD2 93G 1484 A 1 HETATM 23 C CE1 93G . . . B 2 -51.149 4.416 -7.843 1 32.64 ? CE1 93G 1484 A 1 HETATM 24 C CE2 93G . . . B 2 -52.6 5.375 -6.176 1 32.98 ? CE2 93G 1484 A 1 HETATM 25 C CM7 93G . . . B 2 -45.285 4.706 -0.593 1 14.69 ? CM7 93G 1484 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 25 #