data_4CB6
#
_model_server_result.job_id            GCko026ZwMV5JZCYXBOYGQ 
_model_server_result.datetime_utc      '2024-11-08 10:42:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4cb6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1483}' 
#
_entry.id    4CB6 
#
_exptl.entry_id    4CB6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              366.392 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2,9-N,N-DI(4-CARBOXYBUTYL)-7-N-METHYLGUANINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          118.27 
_cell.angle_gamma         90 
_cell.entry_id            4CB6 
_cell.length_a            116.17 
_cell.length_b            31.13 
_cell.length_c            98.79 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4CB6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,R 1 1 
B,K,L,M,N,O,P,Q,S 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 K N N 
#
_chem_comp.formula           'C16 H24 N5 O5 1' 
_chem_comp.formula_weight    366.392 
_chem_comp.id                29R 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2,9-N,N-DI(4-CARBOXYBUTYL)-7-N-METHYLGUANINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 29R sing 1 n n 
N1 C6 29R sing 2 n n 
C2 N2 29R sing 3 n n 
C2 N3 29R doub 4 n n 
N2 C31 29R sing 5 n n 
N3 C4 29R sing 6 n n 
C4 C5 29R doub 7 n y 
C4 N9 29R sing 8 n y 
C5 C6 29R sing 9 n n 
C5 N7 29R sing 10 n y 
C6 O6 29R doub 11 n n 
N7 C8 29R sing 12 n y 
N7 CM7 29R sing 13 n n 
C8 N9 29R doub 14 n y 
N9 C11 29R sing 15 n n 
C11 C12 29R sing 16 n n 
C12 C13 29R sing 17 n n 
C13 C14 29R sing 18 n n 
C14 C15 29R sing 19 n n 
C15 O16 29R doub 20 n n 
C15 O17 29R sing 21 n n 
C31 C32 29R sing 22 n n 
C32 C33 29R sing 23 n n 
C33 C34 29R sing 24 n n 
C34 C35 29R sing 25 n n 
C35 O36 29R doub 26 n n 
C35 O37 29R sing 27 n n 
N1 HN1 29R sing 28 n n 
N2 HN2 29R sing 29 n n 
C8 H8 29R sing 30 n n 
C11 H11 29R sing 31 n n 
C11 H11A 29R sing 32 n n 
C12 H12 29R sing 33 n n 
C12 H12A 29R sing 34 n n 
C13 H13 29R sing 35 n n 
C13 H13A 29R sing 36 n n 
C14 H14 29R sing 37 n n 
C14 H14A 29R sing 38 n n 
C31 H31 29R sing 39 n n 
C31 H31A 29R sing 40 n n 
C32 H32 29R sing 41 n n 
C32 H32A 29R sing 42 n n 
C33 H33 29R sing 43 n n 
C33 H33A 29R sing 44 n n 
C34 H34 29R sing 45 n n 
C34 H34A 29R sing 46 n n 
CM7 HM7 29R sing 47 n n 
CM7 HM7A 29R sing 48 n n 
CM7 HM7B 29R sing 49 n n 
O17 H17 29R sing 50 n n 
O37 H37 29R sing 51 n n 
#
_atom_sites.entry_id                     4CB6 
_atom_sites.fract_transf_matrix[1][1]    0.008608 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004629 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.032123 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011493 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 29R A 1 1483 1483 29R 29R . 
D 3 IOD A 1 1484 1484 IOD IOD . 
E 3 IOD A 1 1485 1485 IOD IOD . 
F 3 IOD A 1 1486 1486 IOD IOD . 
G 3 IOD A 1 1487 1487 IOD IOD . 
H 3 IOD A 1 1488 1488 IOD IOD . 
I 3 IOD A 1 1489 1489 IOD IOD . 
J 3 IOD A 1 1490 1490 IOD IOD . 
K 2 29R B 1 1483 1483 29R 29R . 
L 3 IOD B 1 1484 1484 IOD IOD . 
M 3 IOD B 1 1485 1485 IOD IOD . 
N 3 IOD B 1 1486 1486 IOD IOD . 
O 3 IOD B 1 1487 1487 IOD IOD . 
P 3 IOD B 1 1488 1488 IOD IOD . 
Q 3 IOD B 1 1489 1489 IOD IOD . 
R 4 HOH A 1 2001 2001 HOH HOH . 
R 4 HOH A 2 2002 2002 HOH HOH . 
R 4 HOH A 3 2003 2003 HOH HOH . 
R 4 HOH A 4 2004 2004 HOH HOH . 
R 4 HOH A 5 2005 2005 HOH HOH . 
R 4 HOH A 6 2006 2006 HOH HOH . 
R 4 HOH A 7 2007 2007 HOH HOH . 
R 4 HOH A 8 2008 2008 HOH HOH . 
R 4 HOH A 9 2009 2009 HOH HOH . 
R 4 HOH A 10 2010 2010 HOH HOH . 
R 4 HOH A 11 2011 2011 HOH HOH . 
R 4 HOH A 12 2012 2012 HOH HOH . 
R 4 HOH A 13 2013 2013 HOH HOH . 
R 4 HOH A 14 2014 2014 HOH HOH . 
R 4 HOH A 15 2015 2015 HOH HOH . 
R 4 HOH A 16 2016 2016 HOH HOH . 
R 4 HOH A 17 2017 2017 HOH HOH . 
R 4 HOH A 18 2018 2018 HOH HOH . 
R 4 HOH A 19 2019 2019 HOH HOH . 
R 4 HOH A 20 2020 2020 HOH HOH . 
R 4 HOH A 21 2021 2021 HOH HOH . 
R 4 HOH A 22 2022 2022 HOH HOH . 
R 4 HOH A 23 2023 2023 HOH HOH . 
R 4 HOH A 24 2024 2024 HOH HOH . 
R 4 HOH A 25 2025 2025 HOH HOH . 
R 4 HOH A 26 2026 2026 HOH HOH . 
R 4 HOH A 27 2027 2027 HOH HOH . 
R 4 HOH A 28 2028 2028 HOH HOH . 
R 4 HOH A 29 2029 2029 HOH HOH . 
R 4 HOH A 30 2030 2030 HOH HOH . 
R 4 HOH A 31 2031 2031 HOH HOH . 
R 4 HOH A 32 2032 2032 HOH HOH . 
R 4 HOH A 33 2033 2033 HOH HOH . 
R 4 HOH A 34 2034 2034 HOH HOH . 
R 4 HOH A 35 2035 2035 HOH HOH . 
R 4 HOH A 36 2036 2036 HOH HOH . 
R 4 HOH A 37 2037 2037 HOH HOH . 
R 4 HOH A 38 2038 2038 HOH HOH . 
R 4 HOH A 39 2039 2039 HOH HOH . 
R 4 HOH A 40 2040 2040 HOH HOH . 
R 4 HOH A 41 2041 2041 HOH HOH . 
R 4 HOH A 42 2042 2042 HOH HOH . 
R 4 HOH A 43 2043 2043 HOH HOH . 
R 4 HOH A 44 2044 2044 HOH HOH . 
R 4 HOH A 45 2045 2045 HOH HOH . 
R 4 HOH A 46 2046 2046 HOH HOH . 
R 4 HOH A 47 2047 2047 HOH HOH . 
R 4 HOH A 48 2048 2048 HOH HOH . 
R 4 HOH A 49 2049 2049 HOH HOH . 
R 4 HOH A 50 2050 2050 HOH HOH . 
R 4 HOH A 51 2051 2051 HOH HOH . 
R 4 HOH A 52 2052 2052 HOH HOH . 
R 4 HOH A 53 2053 2053 HOH HOH . 
R 4 HOH A 54 2054 2054 HOH HOH . 
R 4 HOH A 55 2055 2055 HOH HOH . 
R 4 HOH A 56 2056 2056 HOH HOH . 
R 4 HOH A 57 2057 2057 HOH HOH . 
R 4 HOH A 58 2058 2058 HOH HOH . 
R 4 HOH A 59 2059 2059 HOH HOH . 
R 4 HOH A 60 2060 2060 HOH HOH . 
R 4 HOH A 61 2061 2061 HOH HOH . 
R 4 HOH A 62 2062 2062 HOH HOH . 
R 4 HOH A 63 2063 2063 HOH HOH . 
R 4 HOH A 64 2064 2064 HOH HOH . 
R 4 HOH A 65 2065 2065 HOH HOH . 
R 4 HOH A 66 2066 2066 HOH HOH . 
R 4 HOH A 67 2067 2067 HOH HOH . 
R 4 HOH A 68 2068 2068 HOH HOH . 
R 4 HOH A 69 2069 2069 HOH HOH . 
R 4 HOH A 70 2070 2070 HOH HOH . 
R 4 HOH A 71 2071 2071 HOH HOH . 
R 4 HOH A 72 2072 2072 HOH HOH . 
R 4 HOH A 73 2073 2073 HOH HOH . 
R 4 HOH A 74 2074 2074 HOH HOH . 
R 4 HOH A 75 2075 2075 HOH HOH . 
R 4 HOH A 76 2076 2076 HOH HOH . 
R 4 HOH A 77 2077 2077 HOH HOH . 
R 4 HOH A 78 2078 2078 HOH HOH . 
R 4 HOH A 79 2079 2079 HOH HOH . 
R 4 HOH A 80 2080 2080 HOH HOH . 
R 4 HOH A 81 2081 2081 HOH HOH . 
R 4 HOH A 82 2082 2082 HOH HOH . 
R 4 HOH A 83 2083 2083 HOH HOH . 
R 4 HOH A 84 2084 2084 HOH HOH . 
R 4 HOH A 85 2085 2085 HOH HOH . 
R 4 HOH A 86 2086 2086 HOH HOH . 
R 4 HOH A 87 2087 2087 HOH HOH . 
R 4 HOH A 88 2088 2088 HOH HOH . 
R 4 HOH A 89 2089 2089 HOH HOH . 
R 4 HOH A 90 2090 2090 HOH HOH . 
S 4 HOH B 1 2001 2001 HOH HOH . 
S 4 HOH B 2 2002 2002 HOH HOH . 
S 4 HOH B 3 2003 2003 HOH HOH . 
S 4 HOH B 4 2004 2004 HOH HOH . 
S 4 HOH B 5 2005 2005 HOH HOH . 
S 4 HOH B 6 2006 2006 HOH HOH . 
S 4 HOH B 7 2007 2007 HOH HOH . 
S 4 HOH B 8 2008 2008 HOH HOH . 
S 4 HOH B 9 2009 2009 HOH HOH . 
S 4 HOH B 10 2010 2010 HOH HOH . 
S 4 HOH B 11 2011 2011 HOH HOH . 
S 4 HOH B 12 2012 2012 HOH HOH . 
S 4 HOH B 13 2013 2013 HOH HOH . 
S 4 HOH B 14 2014 2014 HOH HOH . 
S 4 HOH B 15 2015 2015 HOH HOH . 
S 4 HOH B 16 2016 2016 HOH HOH . 
S 4 HOH B 17 2017 2017 HOH HOH . 
S 4 HOH B 18 2018 2018 HOH HOH . 
S 4 HOH B 19 2019 2019 HOH HOH . 
S 4 HOH B 20 2020 2020 HOH HOH . 
S 4 HOH B 21 2021 2021 HOH HOH . 
S 4 HOH B 22 2022 2022 HOH HOH . 
S 4 HOH B 23 2023 2023 HOH HOH . 
S 4 HOH B 24 2024 2024 HOH HOH . 
S 4 HOH B 25 2025 2025 HOH HOH . 
S 4 HOH B 26 2026 2026 HOH HOH . 
S 4 HOH B 27 2027 2027 HOH HOH . 
S 4 HOH B 28 2028 2028 HOH HOH . 
S 4 HOH B 29 2029 2029 HOH HOH . 
S 4 HOH B 30 2030 2030 HOH HOH . 
S 4 HOH B 31 2031 2031 HOH HOH . 
S 4 HOH B 32 2032 2032 HOH HOH . 
S 4 HOH B 33 2033 2033 HOH HOH . 
S 4 HOH B 34 2034 2034 HOH HOH . 
S 4 HOH B 35 2035 2035 HOH HOH . 
S 4 HOH B 36 2036 2036 HOH HOH . 
S 4 HOH B 37 2037 2037 HOH HOH . 
S 4 HOH B 38 2038 2038 HOH HOH . 
S 4 HOH B 39 2039 2039 HOH HOH . 
S 4 HOH B 40 2040 2040 HOH HOH . 
S 4 HOH B 41 2041 2041 HOH HOH . 
S 4 HOH B 42 2042 2042 HOH HOH . 
S 4 HOH B 43 2043 2043 HOH HOH . 
S 4 HOH B 44 2044 2044 HOH HOH . 
S 4 HOH B 45 2045 2045 HOH HOH . 
S 4 HOH B 46 2046 2046 HOH HOH . 
S 4 HOH B 47 2047 2047 HOH HOH . 
S 4 HOH B 48 2048 2048 HOH HOH . 
S 4 HOH B 49 2049 2049 HOH HOH . 
S 4 HOH B 50 2050 2050 HOH HOH . 
S 4 HOH B 51 2051 2051 HOH HOH . 
S 4 HOH B 52 2052 2052 HOH HOH . 
S 4 HOH B 53 2053 2053 HOH HOH . 
S 4 HOH B 54 2054 2054 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 29R . . . C 2 -8.699 5.993 43.907 1 17.12 ? N1 29R 1483 A 1 
HETATM 2 C C2 29R . . . C 2 -8.455 7.351 44.065 1 19.1 ? C2 29R 1483 A 1 
HETATM 3 N N2 29R . . . C 2 -9.065 8.029 45.038 1 19.74 ? N2 29R 1483 A 1 
HETATM 4 N N3 29R . . . C 2 -7.586 8.008 43.26 1 16.38 ? N3 29R 1483 A 1 
HETATM 5 C C4 29R . . . C 2 -6.932 7.32 42.299 1 18.14 ? C4 29R 1483 A 1 
HETATM 6 C C5 29R . . . C 2 -7.162 5.959 42.132 1 17.98 ? C5 29R 1483 A 1 
HETATM 7 C C6 29R . . . C 2 -8.049 5.277 42.94 1 17.35 ? C6 29R 1483 A 1 
HETATM 8 O O6 29R . . . C 2 -8.267 4.042 42.81 1 16.77 ? O6 29R 1483 A 1 
HETATM 9 N N7 29R . . . C 2 -6.399 5.525 41.108 1 19.73 ? N7 29R 1483 A 1 
HETATM 10 C C8 29R . . . C 2 -5.707 6.602 40.641 1 20.77 ? C8 29R 1483 A 1 
HETATM 11 N N9 29R . . . C 2 -6.024 7.694 41.387 1 19.68 ? N9 29R 1483 A 1 
HETATM 12 C C11 29R . . . C 2 -5.504 9.064 41.288 1 22.64 ? C11 29R 1483 A 1 
HETATM 13 C C12 29R . . . C 2 -6.322 9.933 40.389 1 23.49 ? C12 29R 1483 A 1 
HETATM 14 C C13 29R . . . C 2 -5.687 11.319 40.226 1 28.92 ? C13 29R 1483 A 1 
HETATM 15 C C14 29R . . . C 2 -6.087 12.187 41.414 1 33.09 ? C14 29R 1483 A 1 
HETATM 16 C C15 29R . . . C 2 -5.666 13.624 41.268 1 37.91 ? C15 29R 1483 A 1 
HETATM 17 O O16 29R . . . C 2 -5.033 13.943 40.233 1 36.85 ? O16 29R 1483 A 1 
HETATM 18 O O17 29R . . . C 2 -5.979 14.416 42.199 1 43.85 ? O17 29R 1483 A 1 
HETATM 19 C C31 29R . . . C 2 -8.726 9.42 45.324 1 22.37 ? C31 29R 1483 A 1 
HETATM 20 C C32 29R . . . C 2 -9.692 10.389 44.706 1 24.86 ? C32 29R 1483 A 1 
HETATM 21 C C33 29R . . . C 2 -9.449 11.757 45.387 1 31.44 ? C33 29R 1483 A 1 
HETATM 22 C C34 29R . . . C 2 -10.153 12.924 44.674 1 37.08 ? C34 29R 1483 A 1 
HETATM 23 C C35 29R . . . C 2 -9.176 14.083 44.603 1 44.23 ? C35 29R 1483 A 1 
HETATM 24 O O36 29R . . . C 2 -8.803 14.513 43.479 1 50.46 ? O36 29R 1483 A 1 
HETATM 25 O O37 29R . . . C 2 -8.746 14.566 45.679 1 47.64 ? O37 29R 1483 A 1 
HETATM 26 C CM7 29R . . . C 2 -6.309 4.162 40.552 1 19.58 ? CM7 29R 1483 A 1 
#
_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           228 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           26 
#