data_4CB7 # _model_server_result.job_id Wd8Y1oySLV-6vGsfAyY0cA _model_server_result.datetime_utc '2024-11-08 10:35:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4cb7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1479}' # _entry.id 4CB7 # _exptl.entry_id 4CB7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.08 _cell.angle_gamma 90 _cell.entry_id 4CB7 _cell.length_a 36.94 _cell.length_b 108.18 _cell.length_c 39.05 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CB7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,H 1 1 B,E,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 170 n n C1 C2 GOL sing 171 n n C1 H11 GOL sing 172 n n C1 H12 GOL sing 173 n n O1 HO1 GOL sing 174 n n C2 O2 GOL sing 175 n n C2 C3 GOL sing 176 n n C2 H2 GOL sing 177 n n O2 HO2 GOL sing 178 n n C3 O3 GOL sing 179 n n C3 H31 GOL sing 180 n n C3 H32 GOL sing 181 n n O3 HO3 GOL sing 182 n n # _atom_sites.entry_id 4CB7 _atom_sites.fract_transf_matrix[1][1] 0.027071 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00051 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009244 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025613 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 1478 1478 GOL GOL . D 2 GOL A 1 1479 1479 GOL GOL . E 2 GOL B 1 1479 1479 GOL GOL . F 2 GOL B 1 1480 1480 GOL GOL . G 3 41G B 1 1481 1481 41G 41G . H 4 HOH A 1 2001 2001 HOH HOH . H 4 HOH A 2 2002 2002 HOH HOH . H 4 HOH A 3 2003 2003 HOH HOH . H 4 HOH A 4 2004 2004 HOH HOH . H 4 HOH A 5 2005 2005 HOH HOH . H 4 HOH A 6 2006 2006 HOH HOH . H 4 HOH A 7 2007 2007 HOH HOH . H 4 HOH A 8 2008 2008 HOH HOH . H 4 HOH A 9 2009 2009 HOH HOH . H 4 HOH A 10 2010 2010 HOH HOH . H 4 HOH A 11 2011 2011 HOH HOH . H 4 HOH A 12 2012 2012 HOH HOH . H 4 HOH A 13 2013 2013 HOH HOH . H 4 HOH A 14 2014 2014 HOH HOH . H 4 HOH A 15 2015 2015 HOH HOH . H 4 HOH A 16 2016 2016 HOH HOH . H 4 HOH A 17 2017 2017 HOH HOH . H 4 HOH A 18 2018 2018 HOH HOH . H 4 HOH A 19 2019 2019 HOH HOH . H 4 HOH A 20 2020 2020 HOH HOH . H 4 HOH A 21 2021 2021 HOH HOH . H 4 HOH A 22 2022 2022 HOH HOH . H 4 HOH A 23 2023 2023 HOH HOH . H 4 HOH A 24 2024 2024 HOH HOH . H 4 HOH A 25 2025 2025 HOH HOH . H 4 HOH A 26 2026 2026 HOH HOH . H 4 HOH A 27 2027 2027 HOH HOH . H 4 HOH A 28 2028 2028 HOH HOH . H 4 HOH A 29 2029 2029 HOH HOH . H 4 HOH A 30 2030 2030 HOH HOH . H 4 HOH A 31 2031 2031 HOH HOH . H 4 HOH A 32 2032 2032 HOH HOH . H 4 HOH A 33 2033 2033 HOH HOH . H 4 HOH A 34 2034 2034 HOH HOH . H 4 HOH A 35 2035 2035 HOH HOH . H 4 HOH A 36 2036 2036 HOH HOH . H 4 HOH A 37 2037 2037 HOH HOH . H 4 HOH A 38 2038 2038 HOH HOH . H 4 HOH A 39 2039 2039 HOH HOH . H 4 HOH A 40 2040 2040 HOH HOH . H 4 HOH A 41 2041 2041 HOH HOH . H 4 HOH A 42 2042 2042 HOH HOH . H 4 HOH A 43 2043 2043 HOH HOH . H 4 HOH A 44 2044 2044 HOH HOH . H 4 HOH A 45 2045 2045 HOH HOH . H 4 HOH A 46 2046 2046 HOH HOH . H 4 HOH A 47 2047 2047 HOH HOH . H 4 HOH A 48 2048 2048 HOH HOH . H 4 HOH A 49 2049 2049 HOH HOH . H 4 HOH A 50 2050 2050 HOH HOH . H 4 HOH A 51 2051 2051 HOH HOH . H 4 HOH A 52 2052 2052 HOH HOH . H 4 HOH A 53 2053 2053 HOH HOH . H 4 HOH A 54 2054 2054 HOH HOH . H 4 HOH A 55 2055 2055 HOH HOH . H 4 HOH A 56 2056 2056 HOH HOH . H 4 HOH A 57 2057 2057 HOH HOH . H 4 HOH A 58 2058 2058 HOH HOH . H 4 HOH A 59 2059 2059 HOH HOH . H 4 HOH A 60 2060 2060 HOH HOH . H 4 HOH A 61 2061 2061 HOH HOH . H 4 HOH A 62 2062 2062 HOH HOH . H 4 HOH A 63 2063 2063 HOH HOH . H 4 HOH A 64 2064 2064 HOH HOH . I 4 HOH B 1 2001 2001 HOH HOH . I 4 HOH B 2 2002 2002 HOH HOH . I 4 HOH B 3 2003 2003 HOH HOH . I 4 HOH B 4 2004 2004 HOH HOH . I 4 HOH B 5 2005 2005 HOH HOH . I 4 HOH B 6 2006 2006 HOH HOH . I 4 HOH B 7 2007 2007 HOH HOH . I 4 HOH B 8 2008 2008 HOH HOH . I 4 HOH B 9 2009 2009 HOH HOH . I 4 HOH B 10 2010 2010 HOH HOH . I 4 HOH B 11 2011 2011 HOH HOH . I 4 HOH B 12 2012 2012 HOH HOH . I 4 HOH B 13 2013 2013 HOH HOH . I 4 HOH B 14 2014 2014 HOH HOH . I 4 HOH B 15 2015 2015 HOH HOH . I 4 HOH B 16 2016 2016 HOH HOH . I 4 HOH B 17 2017 2017 HOH HOH . I 4 HOH B 18 2018 2018 HOH HOH . I 4 HOH B 19 2019 2019 HOH HOH . I 4 HOH B 20 2020 2020 HOH HOH . I 4 HOH B 21 2021 2021 HOH HOH . I 4 HOH B 22 2022 2022 HOH HOH . I 4 HOH B 23 2023 2023 HOH HOH . I 4 HOH B 24 2024 2024 HOH HOH . I 4 HOH B 25 2025 2025 HOH HOH . I 4 HOH B 26 2026 2026 HOH HOH . I 4 HOH B 27 2027 2027 HOH HOH . I 4 HOH B 28 2028 2028 HOH HOH . I 4 HOH B 29 2029 2029 HOH HOH . I 4 HOH B 30 2030 2030 HOH HOH . I 4 HOH B 31 2031 2031 HOH HOH . I 4 HOH B 32 2032 2032 HOH HOH . I 4 HOH B 33 2033 2033 HOH HOH . I 4 HOH B 34 2034 2034 HOH HOH . I 4 HOH B 35 2035 2035 HOH HOH . I 4 HOH B 36 2036 2036 HOH HOH . I 4 HOH B 37 2037 2037 HOH HOH . I 4 HOH B 38 2038 2038 HOH HOH . I 4 HOH B 39 2039 2039 HOH HOH . I 4 HOH B 40 2040 2040 HOH HOH . I 4 HOH B 41 2041 2041 HOH HOH . I 4 HOH B 42 2042 2042 HOH HOH . I 4 HOH B 43 2043 2043 HOH HOH . I 4 HOH B 44 2044 2044 HOH HOH . I 4 HOH B 45 2045 2045 HOH HOH . I 4 HOH B 46 2046 2046 HOH HOH . I 4 HOH B 47 2047 2047 HOH HOH . I 4 HOH B 48 2048 2048 HOH HOH . I 4 HOH B 49 2049 2049 HOH HOH . I 4 HOH B 50 2050 2050 HOH HOH . I 4 HOH B 51 2051 2051 HOH HOH . I 4 HOH B 52 2052 2052 HOH HOH . I 4 HOH B 53 2053 2053 HOH HOH . I 4 HOH B 54 2054 2054 HOH HOH . I 4 HOH B 55 2055 2055 HOH HOH . I 4 HOH B 56 2056 2056 HOH HOH . I 4 HOH B 57 2057 2057 HOH HOH . I 4 HOH B 58 2058 2058 HOH HOH . I 4 HOH B 59 2059 2059 HOH HOH . I 4 HOH B 60 2060 2060 HOH HOH . I 4 HOH B 61 2061 2061 HOH HOH . I 4 HOH B 62 2062 2062 HOH HOH . I 4 HOH B 63 2063 2063 HOH HOH . I 4 HOH B 64 2064 2064 HOH HOH . I 4 HOH B 65 2065 2065 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 2 18.953 -30.035 -2.043 1 31.83 ? C1 GOL 1479 A 1 HETATM 2 O O1 GOL . . . D 2 18.253 -29.862 -3.275 1 27.64 ? O1 GOL 1479 A 1 HETATM 3 C C2 GOL . . . D 2 20.312 -30.64 -2.242 1 31.82 ? C2 GOL 1479 A 1 HETATM 4 O O2 GOL . . . D 2 21.221 -29.623 -2.748 1 27.37 ? O2 GOL 1479 A 1 HETATM 5 C C3 GOL . . . D 2 20.73 -31.261 -0.897 1 34.4 ? C3 GOL 1479 A 1 HETATM 6 O O3 GOL . . . D 2 22.118 -31.598 -0.933 1 38.73 ? O3 GOL 1479 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 27 _model_server_stats.element_count 6 #