data_4CB7 # _model_server_result.job_id E9gbWica8MyaBCCKnxvzVQ _model_server_result.datetime_utc '2024-11-08 10:37:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4cb7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1481}' # _entry.id 4CB7 # _exptl.entry_id 4CB7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 344.302 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-[2-(2-azanyl-7-methyl-6-oxidanylidene-1H-purin-9-ium-9-yl)ethanoyl]-2-oxidanyl-benzoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.08 _cell.angle_gamma 90 _cell.entry_id 4CB7 _cell.length_a 36.94 _cell.length_b 108.18 _cell.length_c 39.05 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CB7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,H 1 1 B,E,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H14 N5 O5 1' _chem_comp.formula_weight 344.302 _chem_comp.id 41G _chem_comp.mon_nstd_flag . _chem_comp.name '5-[2-(2-azanyl-7-methyl-6-oxidanylidene-1H-purin-9-ium-9-yl)ethanoyl]-2-oxidanyl-benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O6 C6 41G doub 1 n n C6 N1 41G sing 2 n n C6 C5 41G sing 3 n n N1 C2 41G sing 4 n n C2 N2 41G sing 5 n n C2 N3 41G doub 6 n n N3 C4 41G sing 7 n n C5 C4 41G doub 8 n y C5 N7 41G sing 9 n y C4 N9 41G sing 10 n y N7 CM7 41G sing 11 n n N7 C8 41G sing 12 n y C8 N9 41G doub 13 n y N9 C1' 41G sing 14 n n C1' C2' 41G sing 15 n n C2' O2' 41G doub 16 n n C2' CG 41G sing 17 n n CG CD2 41G sing 18 n y CG CD1 41G doub 19 n y CD2 CE2 41G doub 20 n y CE2 CN 41G sing 21 n n CE2 CZ 41G sing 22 n y CN ON2 41G sing 23 n n CN ON 41G doub 24 n n CD1 CE1 41G sing 25 n y CE1 CZ 41G doub 26 n y CZ OH 41G sing 27 n n N1 H1 41G sing 28 n n N2 H21N 41G sing 29 n n N2 H22N 41G sing 30 n n CM7 HM71 41G sing 31 n n CM7 HM72 41G sing 32 n n CM7 HM73 41G sing 33 n n C8 H8 41G sing 34 n n C1' "H1'1" 41G sing 35 n n C1' "H1'2" 41G sing 36 n n CD2 HD2 41G sing 37 n n CD1 HD1 41G sing 38 n n ON2 HN2 41G sing 39 n n CE1 HE1 41G sing 40 n n OH HH 41G sing 41 n n # _atom_sites.entry_id 4CB7 _atom_sites.fract_transf_matrix[1][1] 0.027071 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00051 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009244 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025613 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 1478 1478 GOL GOL . D 2 GOL A 1 1479 1479 GOL GOL . E 2 GOL B 1 1479 1479 GOL GOL . F 2 GOL B 1 1480 1480 GOL GOL . G 3 41G B 1 1481 1481 41G 41G . H 4 HOH A 1 2001 2001 HOH HOH . H 4 HOH A 2 2002 2002 HOH HOH . H 4 HOH A 3 2003 2003 HOH HOH . H 4 HOH A 4 2004 2004 HOH HOH . H 4 HOH A 5 2005 2005 HOH HOH . H 4 HOH A 6 2006 2006 HOH HOH . H 4 HOH A 7 2007 2007 HOH HOH . H 4 HOH A 8 2008 2008 HOH HOH . H 4 HOH A 9 2009 2009 HOH HOH . H 4 HOH A 10 2010 2010 HOH HOH . H 4 HOH A 11 2011 2011 HOH HOH . H 4 HOH A 12 2012 2012 HOH HOH . H 4 HOH A 13 2013 2013 HOH HOH . H 4 HOH A 14 2014 2014 HOH HOH . H 4 HOH A 15 2015 2015 HOH HOH . H 4 HOH A 16 2016 2016 HOH HOH . H 4 HOH A 17 2017 2017 HOH HOH . H 4 HOH A 18 2018 2018 HOH HOH . H 4 HOH A 19 2019 2019 HOH HOH . H 4 HOH A 20 2020 2020 HOH HOH . H 4 HOH A 21 2021 2021 HOH HOH . H 4 HOH A 22 2022 2022 HOH HOH . H 4 HOH A 23 2023 2023 HOH HOH . H 4 HOH A 24 2024 2024 HOH HOH . H 4 HOH A 25 2025 2025 HOH HOH . H 4 HOH A 26 2026 2026 HOH HOH . H 4 HOH A 27 2027 2027 HOH HOH . H 4 HOH A 28 2028 2028 HOH HOH . H 4 HOH A 29 2029 2029 HOH HOH . H 4 HOH A 30 2030 2030 HOH HOH . H 4 HOH A 31 2031 2031 HOH HOH . H 4 HOH A 32 2032 2032 HOH HOH . H 4 HOH A 33 2033 2033 HOH HOH . H 4 HOH A 34 2034 2034 HOH HOH . H 4 HOH A 35 2035 2035 HOH HOH . H 4 HOH A 36 2036 2036 HOH HOH . H 4 HOH A 37 2037 2037 HOH HOH . H 4 HOH A 38 2038 2038 HOH HOH . H 4 HOH A 39 2039 2039 HOH HOH . H 4 HOH A 40 2040 2040 HOH HOH . H 4 HOH A 41 2041 2041 HOH HOH . H 4 HOH A 42 2042 2042 HOH HOH . H 4 HOH A 43 2043 2043 HOH HOH . H 4 HOH A 44 2044 2044 HOH HOH . H 4 HOH A 45 2045 2045 HOH HOH . H 4 HOH A 46 2046 2046 HOH HOH . H 4 HOH A 47 2047 2047 HOH HOH . H 4 HOH A 48 2048 2048 HOH HOH . H 4 HOH A 49 2049 2049 HOH HOH . H 4 HOH A 50 2050 2050 HOH HOH . H 4 HOH A 51 2051 2051 HOH HOH . H 4 HOH A 52 2052 2052 HOH HOH . H 4 HOH A 53 2053 2053 HOH HOH . H 4 HOH A 54 2054 2054 HOH HOH . H 4 HOH A 55 2055 2055 HOH HOH . H 4 HOH A 56 2056 2056 HOH HOH . H 4 HOH A 57 2057 2057 HOH HOH . H 4 HOH A 58 2058 2058 HOH HOH . H 4 HOH A 59 2059 2059 HOH HOH . H 4 HOH A 60 2060 2060 HOH HOH . H 4 HOH A 61 2061 2061 HOH HOH . H 4 HOH A 62 2062 2062 HOH HOH . H 4 HOH A 63 2063 2063 HOH HOH . H 4 HOH A 64 2064 2064 HOH HOH . I 4 HOH B 1 2001 2001 HOH HOH . I 4 HOH B 2 2002 2002 HOH HOH . I 4 HOH B 3 2003 2003 HOH HOH . I 4 HOH B 4 2004 2004 HOH HOH . I 4 HOH B 5 2005 2005 HOH HOH . I 4 HOH B 6 2006 2006 HOH HOH . I 4 HOH B 7 2007 2007 HOH HOH . I 4 HOH B 8 2008 2008 HOH HOH . I 4 HOH B 9 2009 2009 HOH HOH . I 4 HOH B 10 2010 2010 HOH HOH . I 4 HOH B 11 2011 2011 HOH HOH . I 4 HOH B 12 2012 2012 HOH HOH . I 4 HOH B 13 2013 2013 HOH HOH . I 4 HOH B 14 2014 2014 HOH HOH . I 4 HOH B 15 2015 2015 HOH HOH . I 4 HOH B 16 2016 2016 HOH HOH . I 4 HOH B 17 2017 2017 HOH HOH . I 4 HOH B 18 2018 2018 HOH HOH . I 4 HOH B 19 2019 2019 HOH HOH . I 4 HOH B 20 2020 2020 HOH HOH . I 4 HOH B 21 2021 2021 HOH HOH . I 4 HOH B 22 2022 2022 HOH HOH . I 4 HOH B 23 2023 2023 HOH HOH . I 4 HOH B 24 2024 2024 HOH HOH . I 4 HOH B 25 2025 2025 HOH HOH . I 4 HOH B 26 2026 2026 HOH HOH . I 4 HOH B 27 2027 2027 HOH HOH . I 4 HOH B 28 2028 2028 HOH HOH . I 4 HOH B 29 2029 2029 HOH HOH . I 4 HOH B 30 2030 2030 HOH HOH . I 4 HOH B 31 2031 2031 HOH HOH . I 4 HOH B 32 2032 2032 HOH HOH . I 4 HOH B 33 2033 2033 HOH HOH . I 4 HOH B 34 2034 2034 HOH HOH . I 4 HOH B 35 2035 2035 HOH HOH . I 4 HOH B 36 2036 2036 HOH HOH . I 4 HOH B 37 2037 2037 HOH HOH . I 4 HOH B 38 2038 2038 HOH HOH . I 4 HOH B 39 2039 2039 HOH HOH . I 4 HOH B 40 2040 2040 HOH HOH . I 4 HOH B 41 2041 2041 HOH HOH . I 4 HOH B 42 2042 2042 HOH HOH . I 4 HOH B 43 2043 2043 HOH HOH . I 4 HOH B 44 2044 2044 HOH HOH . I 4 HOH B 45 2045 2045 HOH HOH . I 4 HOH B 46 2046 2046 HOH HOH . I 4 HOH B 47 2047 2047 HOH HOH . I 4 HOH B 48 2048 2048 HOH HOH . I 4 HOH B 49 2049 2049 HOH HOH . I 4 HOH B 50 2050 2050 HOH HOH . I 4 HOH B 51 2051 2051 HOH HOH . I 4 HOH B 52 2052 2052 HOH HOH . I 4 HOH B 53 2053 2053 HOH HOH . I 4 HOH B 54 2054 2054 HOH HOH . I 4 HOH B 55 2055 2055 HOH HOH . I 4 HOH B 56 2056 2056 HOH HOH . I 4 HOH B 57 2057 2057 HOH HOH . I 4 HOH B 58 2058 2058 HOH HOH . I 4 HOH B 59 2059 2059 HOH HOH . I 4 HOH B 60 2060 2060 HOH HOH . I 4 HOH B 61 2061 2061 HOH HOH . I 4 HOH B 62 2062 2062 HOH HOH . I 4 HOH B 63 2063 2063 HOH HOH . I 4 HOH B 64 2064 2064 HOH HOH . I 4 HOH B 65 2065 2065 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 41G . . . G 3 -2.172 -4.031 3.093 1 19.29 ? N1 41G 1481 B 1 HETATM 2 C C2 41G . . . G 3 -3.287 -3.898 2.331 1 21.61 ? C2 41G 1481 B 1 HETATM 3 N N2 41G . . . G 3 -3.563 -4.74 1.322 1 20.78 ? N2 41G 1481 B 1 HETATM 4 N N3 41G . . . G 3 -4.178 -2.919 2.518 1 20.86 ? N3 41G 1481 B 1 HETATM 5 C C4 41G . . . G 3 -3.93 -2.066 3.505 1 22.34 ? C4 41G 1481 B 1 HETATM 6 C C5 41G . . . G 3 -2.801 -2.187 4.297 1 20.75 ? C5 41G 1481 B 1 HETATM 7 C C6 41G . . . G 3 -1.876 -3.199 4.077 1 20.61 ? C6 41G 1481 B 1 HETATM 8 O O6 41G . . . G 3 -0.816 -3.345 4.752 1 20.51 ? O6 41G 1481 B 1 HETATM 9 N N7 41G . . . G 3 -2.817 -1.19 5.183 1 22.09 ? N7 41G 1481 B 1 HETATM 10 C C8 41G . . . G 3 -3.928 -0.46 4.935 1 22.12 ? C8 41G 1481 B 1 HETATM 11 N N9 41G . . . G 3 -4.604 -1.016 3.918 1 23.31 ? N9 41G 1481 B 1 HETATM 12 C CG 41G . . . G 3 -8.401 -1.01 3.41 1 27.86 ? CG 41G 1481 B 1 HETATM 13 O OH 41G . . . G 3 -12.106 -0.567 1.591 1 32.67 ? OH 41G 1481 B 1 HETATM 14 C CN 41G . . . G 3 -11.881 -2.361 3.894 1 35.95 ? CN 41G 1481 B 1 HETATM 15 O ON2 41G . . . G 3 -13.04 -2.151 3.451 1 38.71 ? ON2 41G 1481 B 1 HETATM 16 C CZ 41G . . . G 3 -10.888 -0.716 2.174 1 29.81 ? CZ 41G 1481 B 1 HETATM 17 C C1' 41G . . . G 3 -5.86 -0.564 3.321 1 25.26 ? C1' 41G 1481 B 1 HETATM 18 C C2' 41G . . . G 3 -7.039 -1.173 4.034 1 29 ? C2' 41G 1481 B 1 HETATM 19 O O2' 41G . . . G 3 -6.891 -1.802 5.067 1 31.09 ? O2' 41G 1481 B 1 HETATM 20 C CD1 41G . . . G 3 -8.555 -0.176 2.299 1 27.39 ? CD1 41G 1481 B 1 HETATM 21 O ON 41G . . . G 3 -11.627 -3.238 4.731 1 35.18 ? ON 41G 1481 B 1 HETATM 22 C CD2 41G . . . G 3 -9.463 -1.714 3.928 1 26.66 ? CD2 41G 1481 B 1 HETATM 23 C CE1 41G . . . G 3 -9.783 -0.038 1.68 1 27.95 ? CE1 41G 1481 B 1 HETATM 24 C CE2 41G . . . G 3 -10.721 -1.583 3.36 1 30.06 ? CE2 41G 1481 B 1 HETATM 25 C CM7 41G . . . G 3 -1.833 -0.845 6.263 1 22.71 ? CM7 41G 1481 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 25 #