data_4CBJ # _model_server_result.job_id 3r_mF-XfAyQwYmDeXA8roQ _model_server_result.datetime_utc '2024-11-28 03:29:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4cbj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":1070}' # _entry.id 4CBJ # _exptl.entry_id 4CBJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 163.215 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TRIS(HYDROXYETHYL)AMINOMETHANE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.28 _cell.angle_gamma 90 _cell.entry_id 4CBJ _cell.length_a 73.94 _cell.length_b 98.33 _cell.length_c 121.93 _cell.Z_PDB 14 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CBJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tridecameric _pdbx_struct_assembly.oligomeric_count 13 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 O N N ? 4 S N N ? 4 BA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C FME 1 A FME 1 1_555 A N ALA 2 A ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 B C FME 1 B FME 1 1_555 B N ALA 2 B ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 I C FME 1 I FME 1 1_555 I N ALA 2 I ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 J C FME 1 J FME 1 1_555 J N ALA 2 J ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 K C FME 1 K FME 1 1_555 K N ALA 2 K ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 L C FME 1 L FME 1 1_555 L N ALA 2 L ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale7 M C FME 1 M FME 1 1_555 M N ALA 2 M ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C7 H17 N O3' _chem_comp.formula_weight 163.215 _chem_comp.id TAM _chem_comp.mon_nstd_flag . _chem_comp.name TRIS(HYDROXYETHYL)AMINOMETHANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TAM sing 388 n n C C2 TAM sing 389 n n C C3 TAM sing 390 n n C N TAM sing 391 n n C1 C4 TAM sing 392 n n C1 H11 TAM sing 393 n n C1 H12 TAM sing 394 n n C2 C5 TAM sing 395 n n C2 H21 TAM sing 396 n n C2 H22 TAM sing 397 n n C3 C6 TAM sing 398 n n C3 H31 TAM sing 399 n n C3 H32 TAM sing 400 n n C4 O4 TAM sing 401 n n C4 H41 TAM sing 402 n n C4 H42 TAM sing 403 n n C5 O5 TAM sing 404 n n C5 H51 TAM sing 405 n n C5 H52 TAM sing 406 n n C6 O6 TAM sing 407 n n C6 H61 TAM sing 408 n n C6 H62 TAM sing 409 n n N HN1 TAM sing 410 n n N HN2 TAM sing 411 n n O4 HO4 TAM sing 412 n n O5 HO5 TAM sing 413 n n O6 HO6 TAM sing 414 n n # _atom_sites.entry_id 4CBJ _atom_sites.fract_transf_matrix[1][1] 0.013524 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003442 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01017 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008463 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code N 3 DPV A 1 200 200 DPV DPV . O 4 TAM A 1 1070 1070 TAM TAM . P 3 DPV B 1 200 200 DPV DPV . Q 3 DPV C 1 200 200 DPV DPV . R 3 DPV D 1 200 200 DPV DPV . S 4 TAM D 1 1070 1070 TAM TAM . T 3 DPV E 1 200 200 DPV DPV . U 3 DPV F 1 200 200 DPV DPV . V 3 DPV G 1 200 200 DPV DPV . W 3 DPV H 1 200 200 DPV DPV . X 3 DPV I 1 200 200 DPV DPV . Y 3 DPV J 1 200 200 DPV DPV . Z 5 LMT J 1 1070 1070 LMT LMT . AA 3 DPV K 1 200 200 DPV DPV . BA 4 TAM K 1 1070 1070 TAM TAM . CA 3 DPV L 1 200 200 DPV DPV . DA 3 DPV M 1 200 200 DPV DPV . EA 6 HOH A 1 2001 2001 HOH HOH . EA 6 HOH A 2 2002 2002 HOH HOH . EA 6 HOH A 3 2003 2003 HOH HOH . EA 6 HOH A 4 2004 2004 HOH HOH . FA 6 HOH B 1 2001 2001 HOH HOH . GA 6 HOH E 1 2001 2001 HOH HOH . GA 6 HOH E 2 2002 2002 HOH HOH . HA 6 HOH F 1 2001 2001 HOH HOH . IA 6 HOH G 1 2001 2001 HOH HOH . JA 6 HOH H 1 2001 2001 HOH HOH . JA 6 HOH H 2 2002 2002 HOH HOH . JA 6 HOH H 3 2003 2003 HOH HOH . KA 6 HOH I 1 2001 2001 HOH HOH . KA 6 HOH I 2 2002 2002 HOH HOH . LA 6 HOH J 1 2001 2001 HOH HOH . LA 6 HOH J 2 2002 2002 HOH HOH . MA 6 HOH K 1 2001 2001 HOH HOH . MA 6 HOH K 2 2002 2002 HOH HOH . NA 6 HOH L 1 2001 2001 HOH HOH . NA 6 HOH L 2 2002 2002 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TAM . . . O 4 0.298 3.133 48.868 1 95.29 ? C TAM 1070 A 1 HETATM 2 C C1 TAM . . . O 4 0.929 4.031 47.808 1 73.88 ? C1 TAM 1070 A 1 HETATM 3 C C2 TAM . . . O 4 0.141 1.713 48.336 1 94.33 ? C2 TAM 1070 A 1 HETATM 4 C C3 TAM . . . O 4 -1.072 3.643 49.316 1 105.17 ? C3 TAM 1070 A 1 HETATM 5 C C4 TAM . . . O 4 2.165 4.761 48.326 1 83.67 ? C4 TAM 1070 A 1 HETATM 6 C C5 TAM . . . O 4 1.435 0.91 48.414 1 80.45 ? C5 TAM 1070 A 1 HETATM 7 C C6 TAM . . . O 4 -1.322 5.114 48.998 1 94.28 ? C6 TAM 1070 A 1 HETATM 8 N N TAM . . . O 4 1.183 3.086 50.032 1 84.29 ? N TAM 1070 A 1 HETATM 9 O O4 TAM . . . O 4 3.188 3.813 48.654 1 92.79 ? O4 TAM 1070 A 1 HETATM 10 O O5 TAM . . . O 4 2.325 1.286 47.357 1 77 ? O5 TAM 1070 A 1 HETATM 11 O O6 TAM . . . O 4 -2.016 5.225 47.748 1 76.65 ? O6 TAM 1070 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 11 #