data_4CBJ # _model_server_result.job_id oRraKKA8CsqfPU3lLlLbVQ _model_server_result.datetime_utc '2024-11-13 08:13:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4cbj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Z","auth_seq_id":1070}' # _entry.id 4CBJ # _exptl.entry_id 4CBJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 510.615 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.28 _cell.angle_gamma 90 _cell.entry_id 4CBJ _cell.length_a 73.94 _cell.length_b 98.33 _cell.length_c 121.93 _cell.Z_PDB 14 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CBJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tridecameric _pdbx_struct_assembly.oligomeric_count 13 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id Z _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C FME 1 A FME 1 1_555 A N ALA 2 A ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 B C FME 1 B FME 1 1_555 B N ALA 2 B ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 I C FME 1 I FME 1 1_555 I N ALA 2 I ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 J C FME 1 J FME 1 1_555 J N ALA 2 J ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 K C FME 1 K FME 1 1_555 K N ALA 2 K ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 L C FME 1 L FME 1 1_555 L N ALA 2 L ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale7 M C FME 1 M FME 1 1_555 M N ALA 2 M ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C24 H46 O11' _chem_comp.formula_weight 510.615 _chem_comp.id LMT _chem_comp.mon_nstd_flag . _chem_comp.name DODECYL-BETA-D-MALTOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1B C2B LMT sing 210 n n C1B O1B LMT sing 211 n n C1B O5B LMT sing 212 n n C1B H1B LMT sing 213 n n C2B C3B LMT sing 214 n n C2B O2B LMT sing 215 n n C2B H2B LMT sing 216 n n C3B C4B LMT sing 217 n n C3B O3B LMT sing 218 n n C3B H3B LMT sing 219 n n C4B C5B LMT sing 220 n n C4B O4' LMT sing 221 n n C4B H4B LMT sing 222 n n C5B C6B LMT sing 223 n n C5B O5B LMT sing 224 n n C5B H5B LMT sing 225 n n C6B O6B LMT sing 226 n n C6B "H6'2" LMT sing 227 n n C6B "H6'1" LMT sing 228 n n O1B C4' LMT sing 229 n n O2B H2O1 LMT sing 230 n n O3B H3O1 LMT sing 231 n n O4' H4O1 LMT sing 232 n n O6B H6B LMT sing 233 n n C1' C2' LMT sing 234 n n C1' O1' LMT sing 235 n n C1' O5' LMT sing 236 n n C1' H1' LMT sing 237 n n C2' C3' LMT sing 238 n n C2' O2' LMT sing 239 n n C2' H2' LMT sing 240 n n C3' C4' LMT sing 241 n n C3' O3' LMT sing 242 n n C3' H3' LMT sing 243 n n C4' C5' LMT sing 244 n n C4' H4' LMT sing 245 n n C5' C6' LMT sing 246 n n C5' O5' LMT sing 247 n n C5' H5' LMT sing 248 n n C6' O6' LMT sing 249 n n C6' H6D LMT sing 250 n n C6' H6E LMT sing 251 n n O1' C1 LMT sing 252 n n O2' H2O2 LMT sing 253 n n O3' H3O2 LMT sing 254 n n O6' H6' LMT sing 255 n n C1 C2 LMT sing 256 n n C1 H12 LMT sing 257 n n C1 H11 LMT sing 258 n n C2 C3 LMT sing 259 n n C2 H22 LMT sing 260 n n C2 H21 LMT sing 261 n n C3 C4 LMT sing 262 n n C3 H32 LMT sing 263 n n C3 H31 LMT sing 264 n n C4 C5 LMT sing 265 n n C4 H42 LMT sing 266 n n C4 H41 LMT sing 267 n n C5 C6 LMT sing 268 n n C5 H52 LMT sing 269 n n C5 H51 LMT sing 270 n n C6 C7 LMT sing 271 n n C6 H62 LMT sing 272 n n C6 H61 LMT sing 273 n n C7 C8 LMT sing 274 n n C7 H72 LMT sing 275 n n C7 H71 LMT sing 276 n n C8 C9 LMT sing 277 n n C8 H82 LMT sing 278 n n C8 H81 LMT sing 279 n n C9 C10 LMT sing 280 n n C9 H92 LMT sing 281 n n C9 H91 LMT sing 282 n n C10 C11 LMT sing 283 n n C10 H102 LMT sing 284 n n C10 H101 LMT sing 285 n n C11 C12 LMT sing 286 n n C11 H112 LMT sing 287 n n C11 H111 LMT sing 288 n n C12 H123 LMT sing 289 n n C12 H122 LMT sing 290 n n C12 H121 LMT sing 291 n n # _atom_sites.entry_id 4CBJ _atom_sites.fract_transf_matrix[1][1] 0.013524 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003442 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01017 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008463 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code N 3 DPV A 1 200 200 DPV DPV . O 4 TAM A 1 1070 1070 TAM TAM . P 3 DPV B 1 200 200 DPV DPV . Q 3 DPV C 1 200 200 DPV DPV . R 3 DPV D 1 200 200 DPV DPV . S 4 TAM D 1 1070 1070 TAM TAM . T 3 DPV E 1 200 200 DPV DPV . U 3 DPV F 1 200 200 DPV DPV . V 3 DPV G 1 200 200 DPV DPV . W 3 DPV H 1 200 200 DPV DPV . X 3 DPV I 1 200 200 DPV DPV . Y 3 DPV J 1 200 200 DPV DPV . Z 5 LMT J 1 1070 1070 LMT LMT . AA 3 DPV K 1 200 200 DPV DPV . BA 4 TAM K 1 1070 1070 TAM TAM . CA 3 DPV L 1 200 200 DPV DPV . DA 3 DPV M 1 200 200 DPV DPV . EA 6 HOH A 1 2001 2001 HOH HOH . EA 6 HOH A 2 2002 2002 HOH HOH . EA 6 HOH A 3 2003 2003 HOH HOH . EA 6 HOH A 4 2004 2004 HOH HOH . FA 6 HOH B 1 2001 2001 HOH HOH . GA 6 HOH E 1 2001 2001 HOH HOH . GA 6 HOH E 2 2002 2002 HOH HOH . HA 6 HOH F 1 2001 2001 HOH HOH . IA 6 HOH G 1 2001 2001 HOH HOH . JA 6 HOH H 1 2001 2001 HOH HOH . JA 6 HOH H 2 2002 2002 HOH HOH . JA 6 HOH H 3 2003 2003 HOH HOH . KA 6 HOH I 1 2001 2001 HOH HOH . KA 6 HOH I 2 2002 2002 HOH HOH . LA 6 HOH J 1 2001 2001 HOH HOH . LA 6 HOH J 2 2002 2002 HOH HOH . MA 6 HOH K 1 2001 2001 HOH HOH . MA 6 HOH K 2 2002 2002 HOH HOH . NA 6 HOH L 1 2001 2001 HOH HOH . NA 6 HOH L 2 2002 2002 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1B LMT . . . Z 5 65.353 3.516 24.874 1 135.74 ? C1B LMT 1070 J 1 HETATM 2 C C2B LMT . . . Z 5 66.618 2.687 24.673 1 133.41 ? C2B LMT 1070 J 1 HETATM 3 C C3B LMT . . . Z 5 67.85 3.582 24.611 1 142.79 ? C3B LMT 1070 J 1 HETATM 4 C C4B LMT . . . Z 5 67.651 4.684 23.58 1 146 ? C4B LMT 1070 J 1 HETATM 5 C C5B LMT . . . Z 5 66.354 5.435 23.854 1 145.24 ? C5B LMT 1070 J 1 HETATM 6 C C6B LMT . . . Z 5 66.105 6.505 22.797 1 131.34 ? C6B LMT 1070 J 1 HETATM 7 O O1B LMT . . . Z 5 65.381 4.126 26.163 1 129.68 ? O1B LMT 1070 J 1 HETATM 8 O O2B LMT . . . Z 5 66.755 1.752 25.75 1 123.56 ? O2B LMT 1070 J 1 HETATM 9 O O3B LMT . . . Z 5 69 2.801 24.266 1 144.26 ? O3B LMT 1070 J 1 HETATM 10 O O4' LMT . . . Z 5 68.756 5.594 23.63 1 126.42 ? O4' LMT 1070 J 1 HETATM 11 O O5B LMT . . . Z 5 65.257 4.518 23.859 1 147.3 ? O5B LMT 1070 J 1 HETATM 12 O O6B LMT . . . Z 5 67.225 7.395 22.735 1 132.55 ? O6B LMT 1070 J 1 HETATM 13 C C1' LMT . . . Z 5 64.623 3.799 29.15 1 111.24 ? C1' LMT 1070 J 1 HETATM 14 C C2' LMT . . . Z 5 63.639 2.856 28.469 1 105.27 ? C2' LMT 1070 J 1 HETATM 15 C C3' LMT . . . Z 5 63.262 3.347 27.071 1 118.04 ? C3' LMT 1070 J 1 HETATM 16 C C4' LMT . . . Z 5 64.085 4.549 26.598 1 122.55 ? C4' LMT 1070 J 1 HETATM 17 C C5' LMT . . . Z 5 64.229 5.636 27.668 1 125.28 ? C5' LMT 1070 J 1 HETATM 18 C C6' LMT . . . Z 5 63.195 6.742 27.479 1 109.98 ? C6' LMT 1070 J 1 HETATM 19 O O1' LMT . . . Z 5 64.741 3.476 30.534 1 92.03 ? O1' LMT 1070 J 1 HETATM 20 O O2' LMT . . . Z 5 64.213 1.547 28.381 1 128.76 ? O2' LMT 1070 J 1 HETATM 21 O O3' LMT . . . Z 5 61.869 3.685 27.043 1 124.54 ? O3' LMT 1070 J 1 HETATM 22 O O5' LMT . . . Z 5 64.124 5.126 29.003 1 120.31 ? O5' LMT 1070 J 1 HETATM 23 O O6' LMT . . . Z 5 61.916 6.292 27.939 1 78.23 ? O6' LMT 1070 J 1 HETATM 24 C C1 LMT . . . Z 5 65.875 4.12 31.113 1 87.67 ? C1 LMT 1070 J 1 HETATM 25 C C2 LMT . . . Z 5 65.702 4.234 32.622 1 72.7 ? C2 LMT 1070 J 1 HETATM 26 C C3 LMT . . . Z 5 65.63 2.869 33.297 1 65.8 ? C3 LMT 1070 J 1 HETATM 27 C C4 LMT . . . Z 5 65.428 3.002 34.805 1 80.94 ? C4 LMT 1070 J 1 HETATM 28 C C5 LMT . . . Z 5 66.706 3.436 35.517 1 67.12 ? C5 LMT 1070 J 1 HETATM 29 C C6 LMT . . . Z 5 66.659 4.904 35.931 1 65.38 ? C6 LMT 1070 J 1 HETATM 30 C C7 LMT . . . Z 5 65.552 5.166 36.945 1 67.3 ? C7 LMT 1070 J 1 HETATM 31 C C8 LMT . . . Z 5 65.464 6.653 37.27 1 42.19 ? C8 LMT 1070 J 1 HETATM 32 C C9 LMT . . . Z 5 64.575 6.904 38.482 1 47.54 ? C9 LMT 1070 J 1 HETATM 33 C C10 LMT . . . Z 5 64.493 8.395 38.789 1 64.14 ? C10 LMT 1070 J 1 HETATM 34 C C11 LMT . . . Z 5 63.722 8.651 40.078 1 71.46 ? C11 LMT 1070 J 1 HETATM 35 C C12 LMT . . . Z 5 63.62 10.133 40.363 1 77.57 ? C12 LMT 1070 J 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 215 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 35 #