data_4CBJ # _model_server_result.job_id P5t50410Bij1z2QSO0fmhA _model_server_result.datetime_utc '2024-11-13 08:01:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4cbj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":200}' # _entry.id 4CBJ # _exptl.entry_id 4CBJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.462 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'dodecyl 2-(trimethylammonio)ethyl phosphate' _entity.pdbx_number_of_molecules 13 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.28 _cell.angle_gamma 90 _cell.entry_id 4CBJ _cell.length_a 73.94 _cell.length_b 98.33 _cell.length_c 121.93 _cell.Z_PDB 14 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CBJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tridecameric _pdbx_struct_assembly.oligomeric_count 13 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 N N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 T N N ? 3 U N N ? 3 V N N ? 3 W N N ? 3 X N N ? 3 Y N N ? 3 AA N N ? 3 CA N N ? 3 DA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C FME 1 A FME 1 1_555 A N ALA 2 A ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 B C FME 1 B FME 1 1_555 B N ALA 2 B ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 I C FME 1 I FME 1 1_555 I N ALA 2 I ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 J C FME 1 J FME 1 1_555 J N ALA 2 J ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 K C FME 1 K FME 1 1_555 K N ALA 2 K ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 L C FME 1 L FME 1 1_555 L N ALA 2 L ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale7 M C FME 1 M FME 1 1_555 M N ALA 2 M ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C17 H38 N O4 P' _chem_comp.formula_weight 351.462 _chem_comp.id DPV _chem_comp.mon_nstd_flag . _chem_comp.name 'dodecyl 2-(trimethylammonio)ethyl phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms dodecylphosphocholine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C5 DPV sing 39 n n N C6 DPV sing 40 n n N C7 DPV sing 41 n n N C8 DPV sing 42 n n P O1P DPV sing 43 n n P O2P DPV doub 44 n n P O3P DPV sing 45 n n P O4P DPV sing 46 n n C1 C2 DPV sing 47 n n C1 O3P DPV sing 48 n n C2 C3 DPV sing 49 n n C3 C15 DPV sing 50 n n C4 C5 DPV sing 51 n n C4 O4P DPV sing 52 n n C15 C16 DPV sing 53 n n C16 C17 DPV sing 54 n n C17 C18 DPV sing 55 n n C18 C19 DPV sing 56 n n C19 C20 DPV sing 57 n n C20 C21 DPV sing 58 n n C21 C22 DPV sing 59 n n C22 C23 DPV sing 60 n n C1 H1 DPV sing 61 n n C1 H1A DPV sing 62 n n C2 H2 DPV sing 63 n n C2 H2A DPV sing 64 n n C3 H3 DPV sing 65 n n C3 H3A DPV sing 66 n n C4 H4 DPV sing 67 n n C4 H4A DPV sing 68 n n C5 H5 DPV sing 69 n n C5 H5A DPV sing 70 n n C6 H6 DPV sing 71 n n C6 H6A DPV sing 72 n n C6 H6B DPV sing 73 n n C7 H7 DPV sing 74 n n C7 H7A DPV sing 75 n n C7 H7B DPV sing 76 n n C8 H8 DPV sing 77 n n C8 H8A DPV sing 78 n n C8 H8B DPV sing 79 n n C15 H15 DPV sing 80 n n C15 H15A DPV sing 81 n n C16 H16 DPV sing 82 n n C16 H16A DPV sing 83 n n C17 H17 DPV sing 84 n n C17 H17A DPV sing 85 n n C18 H18 DPV sing 86 n n C18 H18A DPV sing 87 n n C19 H19 DPV sing 88 n n C19 H19A DPV sing 89 n n C20 H20 DPV sing 90 n n C20 H20A DPV sing 91 n n C21 H21 DPV sing 92 n n C21 H21A DPV sing 93 n n C22 H22 DPV sing 94 n n C22 H22A DPV sing 95 n n C23 H23 DPV sing 96 n n C23 H23A DPV sing 97 n n C23 H23B DPV sing 98 n n # _atom_sites.entry_id 4CBJ _atom_sites.fract_transf_matrix[1][1] 0.013524 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003442 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01017 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008463 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code N 3 DPV A 1 200 200 DPV DPV . O 4 TAM A 1 1070 1070 TAM TAM . P 3 DPV B 1 200 200 DPV DPV . Q 3 DPV C 1 200 200 DPV DPV . R 3 DPV D 1 200 200 DPV DPV . S 4 TAM D 1 1070 1070 TAM TAM . T 3 DPV E 1 200 200 DPV DPV . U 3 DPV F 1 200 200 DPV DPV . V 3 DPV G 1 200 200 DPV DPV . W 3 DPV H 1 200 200 DPV DPV . X 3 DPV I 1 200 200 DPV DPV . Y 3 DPV J 1 200 200 DPV DPV . Z 5 LMT J 1 1070 1070 LMT LMT . AA 3 DPV K 1 200 200 DPV DPV . BA 4 TAM K 1 1070 1070 TAM TAM . CA 3 DPV L 1 200 200 DPV DPV . DA 3 DPV M 1 200 200 DPV DPV . EA 6 HOH A 1 2001 2001 HOH HOH . EA 6 HOH A 2 2002 2002 HOH HOH . EA 6 HOH A 3 2003 2003 HOH HOH . EA 6 HOH A 4 2004 2004 HOH HOH . FA 6 HOH B 1 2001 2001 HOH HOH . GA 6 HOH E 1 2001 2001 HOH HOH . GA 6 HOH E 2 2002 2002 HOH HOH . HA 6 HOH F 1 2001 2001 HOH HOH . IA 6 HOH G 1 2001 2001 HOH HOH . JA 6 HOH H 1 2001 2001 HOH HOH . JA 6 HOH H 2 2002 2002 HOH HOH . JA 6 HOH H 3 2003 2003 HOH HOH . KA 6 HOH I 1 2001 2001 HOH HOH . KA 6 HOH I 2 2002 2002 HOH HOH . LA 6 HOH J 1 2001 2001 HOH HOH . LA 6 HOH J 2 2002 2002 HOH HOH . MA 6 HOH K 1 2001 2001 HOH HOH . MA 6 HOH K 2 2002 2002 HOH HOH . NA 6 HOH L 1 2001 2001 HOH HOH . NA 6 HOH L 2 2002 2002 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N DPV . . . R 3 19.303 19.345 35.137 1 137.25 ? N DPV 200 D 1 HETATM 2 P P DPV . . . R 3 18.304 21.862 31.342 0 89.21 ? P DPV 200 D 1 HETATM 3 C C1 DPV . . . R 3 19.59 20.69 29.362 1 69.6 ? C1 DPV 200 D 1 HETATM 4 C C2 DPV . . . R 3 20.847 20.892 28.526 1 70.33 ? C2 DPV 200 D 1 HETATM 5 C C3 DPV . . . R 3 20.936 19.861 27.406 1 64.31 ? C3 DPV 200 D 1 HETATM 6 C C4 DPV . . . R 3 19.146 19.691 32.67 1 101.86 ? C4 DPV 200 D 1 HETATM 7 C C5 DPV . . . R 3 18.759 18.826 33.869 1 118.56 ? C5 DPV 200 D 1 HETATM 8 C C6 DPV . . . R 3 20.748 19.582 35.007 1 118.72 ? C6 DPV 200 D 1 HETATM 9 C C7 DPV . . . R 3 18.636 20.595 35.526 1 119.94 ? C7 DPV 200 D 1 HETATM 10 C C8 DPV . . . R 3 19.072 18.352 36.194 1 131.35 ? C8 DPV 200 D 1 HETATM 11 C C15 DPV . . . R 3 22.005 20.262 26.398 1 66.2 ? C15 DPV 200 D 1 HETATM 12 C C16 DPV . . . R 3 22.439 19.085 25.533 1 66.39 ? C16 DPV 200 D 1 HETATM 13 C C17 DPV . . . R 3 23.424 19.552 24.469 1 74.48 ? C17 DPV 200 D 1 HETATM 14 C C18 DPV . . . R 3 24.199 18.387 23.864 1 77.16 ? C18 DPV 200 D 1 HETATM 15 C C19 DPV . . . R 3 25.162 18.886 22.793 1 74.06 ? C19 DPV 200 D 1 HETATM 16 O O1P DPV . . . R 3 18.483 23.185 32.045 1 95.73 ? O1P DPV 200 D 1 HETATM 17 C C20 DPV . . . R 3 26.176 17.813 22.415 1 72.54 ? C20 DPV 200 D 1 HETATM 18 C C21 DPV . . . R 3 27.132 18.323 21.342 1 93.2 ? C21 DPV 200 D 1 HETATM 19 C C22 DPV . . . R 3 28.268 17.336 21.106 1 104.41 ? C22 DPV 200 D 1 HETATM 20 C C23 DPV . . . R 3 29.185 17.818 20.002 1 66.7 ? C23 DPV 200 D 1 HETATM 21 O O2P DPV . . . R 3 17.135 21.682 30.403 1 85.21 ? O2P DPV 200 D 1 HETATM 22 O O3P DPV . . . R 3 19.65 21.51 30.53 0.59 73.43 ? O3P DPV 200 D 1 HETATM 23 O O4P DPV . . . R 3 18.195 20.742 32.496 0 95.96 ? O4P DPV 200 D 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 23 #