data_4CBT
#
_model_server_result.job_id            XRT2ALWYm89dgGvxPiBKww 
_model_server_result.datetime_utc      '2025-07-09 16:14:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4cbt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":2035}' 
#
_entry.id    4CBT 
#
_exptl.entry_id    4CBT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              349.358 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (1R,2R,3R)-2-[4-(5-fluoranylpyrimidin-2-yl)phenyl]-N-oxidanyl-3-phenyl-cyclopropane-1-carboxamide 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4CBT 
_cell.length_a            104.41 
_cell.length_b            104.41 
_cell.length_c            88.44 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4CBT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        145 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,M 1 1 
B,G,H,I,N 2 1 
C,J,K,L,O 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 G N N 
? 2 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 23 A CYS 667 1_555 F ZN ZN . A ZN 2037 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? 
metalc ? metalc2 A SG CYS 25 A CYS 669 1_555 F ZN ZN . A ZN 2037 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? 
metalc ? metalc3 A NE2 HIS 31 A HIS 675 1_555 F ZN ZN . A ZN 2037 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? 
metalc ? metalc4 A OD1 ASP 196 A ASP 840 1_555 E ZN ZN . A ZN 2036 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.884 ? 
metalc ? metalc5 A ND1 HIS 198 A HIS 842 1_555 E ZN ZN . A ZN 2036 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? 
metalc ? metalc6 A OD2 ASP 290 A ASP 934 1_555 E ZN ZN . A ZN 2036 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.851 ? 
metalc ? metalc7 D O17 9F4 . A 9F4 2035 1_555 E ZN ZN . A ZN 2036 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
metalc ? metalc8 D O19 9F4 . A 9F4 2035 1_555 E ZN ZN . A ZN 2036 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? 
metalc ? metalc9 B SG CYS 23 B CYS 667 1_555 I ZN ZN . B ZN 2036 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? 
metalc ? metalc10 B SG CYS 25 B CYS 669 1_555 I ZN ZN . B ZN 2036 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? 
metalc ? metalc11 B NE2 HIS 31 B HIS 675 1_555 I ZN ZN . B ZN 2036 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? 
metalc ? metalc12 B OD2 ASP 196 B ASP 840 1_555 H ZN ZN . B ZN 2035 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? 
metalc ? metalc13 B OD1 ASP 196 B ASP 840 1_555 H ZN ZN . B ZN 2035 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.924 ? 
metalc ? metalc14 B ND1 HIS 198 B HIS 842 1_555 H ZN ZN . B ZN 2035 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? 
metalc ? metalc15 B OD2 ASP 290 B ASP 934 1_555 H ZN ZN . B ZN 2035 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.888 ? 
metalc ? metalc16 G O19 9F4 . B 9F4 2034 1_555 H ZN ZN . B ZN 2035 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? 
metalc ? metalc17 G O17 9F4 . B 9F4 2034 1_555 H ZN ZN . B ZN 2035 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? 
metalc ? metalc18 C SG CYS 23 C CYS 667 1_555 L ZN ZN . C ZN 2037 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? 
metalc ? metalc19 C SG CYS 25 C CYS 669 1_555 L ZN ZN . C ZN 2037 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? 
metalc ? metalc20 C NE2 HIS 31 C HIS 675 1_555 L ZN ZN . C ZN 2037 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? 
metalc ? metalc21 C OD2 ASP 196 C ASP 840 1_555 K ZN ZN . C ZN 2036 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? 
metalc ? metalc22 C OD1 ASP 196 C ASP 840 1_555 K ZN ZN . C ZN 2036 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.917 ? 
metalc ? metalc23 C ND1 HIS 198 C HIS 842 1_555 K ZN ZN . C ZN 2036 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? 
metalc ? metalc24 C OD2 ASP 290 C ASP 934 1_555 K ZN ZN . C ZN 2036 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.863 ? 
metalc ? metalc25 J O17 9F4 . C 9F4 2035 1_555 K ZN ZN . C ZN 2036 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
metalc ? metalc26 J O19 9F4 . C 9F4 2035 1_555 K ZN ZN . C ZN 2036 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? 
#
_chem_comp.formula           'C20 H16 F N3 O2' 
_chem_comp.formula_weight    349.358 
_chem_comp.id                9F4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (1R,2R,3R)-2-[4-(5-fluoranylpyrimidin-2-yl)phenyl]-N-oxidanyl-3-phenyl-cyclopropane-1-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
F26 C23 9F4 sing 1 n n 
C23 C22 9F4 sing 2 n y 
C23 C24 9F4 doub 3 n y 
C22 N21 9F4 doub 4 n y 
N21 C20 9F4 sing 5 n y 
C24 N25 9F4 sing 6 n y 
N25 C20 9F4 doub 7 n y 
C20 C12 9F4 sing 8 n n 
C12 C11 9F4 sing 9 n y 
C12 C13 9F4 doub 10 n y 
C11 C10 9F4 doub 11 n y 
C10 C9 9F4 sing 12 n y 
C13 C14 9F4 sing 13 n y 
C14 C9 9F4 doub 14 n y 
C9 C8 9F4 sing 15 n n 
C8 C15 9F4 sing 16 n n 
C8 C7 9F4 sing 17 n n 
C15 C16 9F4 sing 18 n n 
C15 C7 9F4 sing 19 n n 
C16 N18 9F4 sing 20 n n 
C16 O17 9F4 doub 21 n n 
N18 O19 9F4 sing 22 n n 
C7 C6 9F4 sing 23 n n 
C6 C1 9F4 sing 24 n y 
C6 C5 9F4 doub 25 n y 
C1 C2 9F4 doub 26 n y 
C5 C4 9F4 sing 27 n y 
C4 C3 9F4 doub 28 n y 
C3 C2 9F4 sing 29 n y 
O19 H19 9F4 sing 30 n n 
C22 H22 9F4 sing 31 n n 
C24 H24 9F4 sing 32 n n 
C11 H11 9F4 sing 33 n n 
C13 H13 9F4 sing 34 n n 
C10 H10 9F4 sing 35 n n 
C14 H14 9F4 sing 36 n n 
C8 H8 9F4 sing 37 n n 
C15 H15 9F4 sing 38 n n 
C7 H7 9F4 sing 39 n n 
N18 H18 9F4 sing 40 n n 
C1 H1 9F4 sing 41 n n 
C5 H5 9F4 sing 42 n n 
C2 H2 9F4 sing 43 n n 
C4 H4 9F4 sing 44 n n 
C3 H3 9F4 sing 45 n n 
#
_atom_sites.entry_id                     4CBT 
_atom_sites.fract_transf_matrix[1][1]    0.009578 
_atom_sites.fract_transf_matrix[1][2]    0.00553 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011059 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011307 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 9F4 A 1 2035 2035 9F4 9F4 . 
E 3 ZN A 1 2036 2036 ZN ZN . 
F 3 ZN A 1 2037 2037 ZN ZN . 
G 2 9F4 B 1 2034 2034 9F4 9F4 . 
H 3 ZN B 1 2035 2035 ZN ZN . 
I 3 ZN B 1 2036 2036 ZN ZN . 
J 2 9F4 C 1 2035 2035 9F4 9F4 . 
K 3 ZN C 1 2036 2036 ZN ZN . 
L 3 ZN C 1 2037 2037 ZN ZN . 
M 4 HOH A 1 2001 2001 HOH HOH . 
M 4 HOH A 2 2002 2002 HOH HOH . 
M 4 HOH A 3 2003 2003 HOH HOH . 
M 4 HOH A 4 2004 2004 HOH HOH . 
M 4 HOH A 5 2005 2005 HOH HOH . 
N 4 HOH B 1 2001 2001 HOH HOH . 
N 4 HOH B 2 2002 2002 HOH HOH . 
N 4 HOH B 3 2003 2003 HOH HOH . 
N 4 HOH B 4 2004 2004 HOH HOH . 
O 4 HOH C 1 2001 2001 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 F F26 9F4 . . . D 2 -0.174 3.883 133.661 1 34.02 ? F26 9F4 2035 A 1 
HETATM 2 C C23 9F4 . . . D 2 0.976 4.134 134.292 1 33.65 ? C23 9F4 2035 A 1 
HETATM 3 C C22 9F4 . . . D 2 2.188 3.994 133.666 1 33.24 ? C22 9F4 2035 A 1 
HETATM 4 N N21 9F4 . . . D 2 3.365 4.241 134.274 1 32.99 ? N21 9F4 2035 A 1 
HETATM 5 C C24 9F4 . . . D 2 1.006 4.545 135.601 1 33.58 ? C24 9F4 2035 A 1 
HETATM 6 N N25 9F4 . . . D 2 2.152 4.799 136.264 1 33.34 ? N25 9F4 2035 A 1 
HETATM 7 C C20 9F4 . . . D 2 3.298 4.635 135.566 1 33.03 ? C20 9F4 2035 A 1 
HETATM 8 C C12 9F4 . . . D 2 4.556 4.897 136.269 1 32.87 ? C12 9F4 2035 A 1 
HETATM 9 C C11 9F4 . . . D 2 5.651 5.464 135.609 1 32.81 ? C11 9F4 2035 A 1 
HETATM 10 C C10 9F4 . . . D 2 6.835 5.739 136.292 1 32.57 ? C10 9F4 2035 A 1 
HETATM 11 C C13 9F4 . . . D 2 4.701 4.594 137.631 1 32.85 ? C13 9F4 2035 A 1 
HETATM 12 C C14 9F4 . . . D 2 5.898 4.852 138.306 1 32.67 ? C14 9F4 2035 A 1 
HETATM 13 C C9 9F4 . . . D 2 6.989 5.442 137.653 1 32.28 ? C9 9F4 2035 A 1 
HETATM 14 C C8 9F4 . . . D 2 8.309 5.733 138.305 1 31.76 ? C8 9F4 2035 A 1 
HETATM 15 C C15 9F4 . . . D 2 8.495 6.966 139.141 1 31.34 ? C15 9F4 2035 A 1 
HETATM 16 C C16 9F4 . . . D 2 9.713 7.779 139.054 1 30.8 ? C16 9F4 2035 A 1 
HETATM 17 N N18 9F4 . . . D 2 9.654 8.939 139.773 1 30.71 ? N18 9F4 2035 A 1 
HETATM 18 O O19 9F4 . . . D 2 10.802 9.728 139.82 1 30.16 ? O19 9F4 2035 A 1 
HETATM 19 O O17 9F4 . . . D 2 10.683 7.464 138.366 1 30.19 ? O17 9F4 2035 A 1 
HETATM 20 C C7 9F4 . . . D 2 8.543 5.612 139.804 1 31.61 ? C7 9F4 2035 A 1 
HETATM 21 C C6 9F4 . . . D 2 9.797 4.852 140.175 1 31.58 ? C6 9F4 2035 A 1 
HETATM 22 C C1 9F4 . . . D 2 10.738 5.322 141.097 1 31.88 ? C1 9F4 2035 A 1 
HETATM 23 C C5 9F4 . . . D 2 10.036 3.588 139.598 1 31.38 ? C5 9F4 2035 A 1 
HETATM 24 C C4 9F4 . . . D 2 11.183 2.853 139.876 1 31.34 ? C4 9F4 2035 A 1 
HETATM 25 C C3 9F4 . . . D 2 12.114 3.352 140.772 1 31.55 ? C3 9F4 2035 A 1 
HETATM 26 C C2 9F4 . . . D 2 11.883 4.573 141.396 1 31.74 ? C2 9F4 2035 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    31 
_model_server_stats.query_time_ms           227 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           26 
#