data_4CBW # _model_server_result.job_id 6jWTWwQJ6Q4cozwYvRWf5w _model_server_result.datetime_utc '2024-11-22 10:55:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4cbw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1378}' # _entry.id 4CBW # _exptl.entry_id 4CBW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 88.105 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1,4-DIETHYLENE DIOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4CBW _cell.length_a 54.24 _cell.length_b 69.53 _cell.length_c 178.83 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CBW _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 169 A GLU 168 1_555 F CA CA . G CA 1150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc2 C CA CA . A CA 1377 1_555 E O2B ATP . A ATP 1379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc3 C CA CA . A CA 1377 1_555 E PG ATP . A ATP 1379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.106 ? metalc ? metalc4 C CA CA . A CA 1377 1_555 E O2G ATP . A ATP 1379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.797 ? metalc ? metalc5 C CA CA . A CA 1377 1_555 E O3G ATP . A ATP 1379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc6 C CA CA . A CA 1377 1_555 H O HOH . A HOH 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc7 C CA CA . A CA 1377 1_555 H O HOH . A HOH 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc8 C CA CA . A CA 1377 1_555 H O HOH . A HOH 2006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc9 C CA CA . A CA 1377 1_555 H O HOH . A HOH 2015 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc10 C CA CA . A CA 1377 1_555 H O HOH . A HOH 2022 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc11 H O HOH . A HOH 2024 1_555 F CA CA . G CA 1150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? metalc ? metalc12 H O HOH . A HOH 2025 1_555 F CA CA . G CA 1150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? metalc ? metalc13 B O GLY 43 G GLY 65 1_555 G CA CA . G CA 1151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc14 B OD1 ASP 44 G ASP 66 1_555 G CA CA . G CA 1151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc15 B OE1 GLU 75 G GLU 97 1_555 G CA CA . G CA 1151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc16 B OE2 GLU 75 G GLU 97 1_555 G CA CA . G CA 1151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc17 B OD2 ASP 87 G ASP 109 1_555 F CA CA . G CA 1150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc18 B OD1 ASP 87 G ASP 109 1_555 F CA CA . G CA 1150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.769 ? metalc ? metalc19 B O GLY 92 G GLY 114 1_555 F CA CA . G CA 1150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc20 B O ALA 94 G ALA 116 1_555 F CA CA . G CA 1150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc21 B O VAL 123 G VAL 145 1_555 G CA CA . G CA 1151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc22 G CA CA . G CA 1151 1_555 I O HOH . G HOH 2006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? metalc ? metalc23 G CA CA . G CA 1151 1_555 I O HOH . G HOH 2015 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? # _chem_comp.formula 'C4 H8 O2' _chem_comp.formula_weight 88.105 _chem_comp.id DIO _chem_comp.mon_nstd_flag . _chem_comp.name '1,4-DIETHYLENE DIOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C1' DIO sing 132 n n C1 O1 DIO sing 133 n n C1 H11 DIO sing 134 n n C1 H12 DIO sing 135 n n C2 C2' DIO sing 136 n n C2 O1 DIO sing 137 n n C2 H21 DIO sing 138 n n C2 H22 DIO sing 139 n n C1' O1' DIO sing 140 n n C1' "H1'1" DIO sing 141 n n C1' "H1'2" DIO sing 142 n n C2' O1' DIO sing 143 n n C2' "H2'1" DIO sing 144 n n C2' "H2'2" DIO sing 145 n n # _atom_sites.entry_id 4CBW _atom_sites.fract_transf_matrix[1][1] 0.018437 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014382 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005592 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 1377 1377 CA CA . D 4 DIO A 1 1378 1378 DIO DIO . E 5 ATP A 1 1379 1379 ATP ATP . F 3 CA G 1 1150 1150 CA CA . G 3 CA G 1 1151 1151 CA CA . H 6 HOH A 1 2001 2001 HOH HOH . H 6 HOH A 2 2002 2002 HOH HOH . H 6 HOH A 3 2003 2003 HOH HOH . H 6 HOH A 4 2004 2004 HOH HOH . H 6 HOH A 5 2005 2005 HOH HOH . H 6 HOH A 6 2006 2006 HOH HOH . H 6 HOH A 7 2007 2007 HOH HOH . H 6 HOH A 8 2008 2008 HOH HOH . H 6 HOH A 9 2009 2009 HOH HOH . H 6 HOH A 10 2010 2010 HOH HOH . H 6 HOH A 11 2011 2011 HOH HOH . H 6 HOH A 12 2012 2012 HOH HOH . H 6 HOH A 13 2013 2013 HOH HOH . H 6 HOH A 14 2014 2014 HOH HOH . H 6 HOH A 15 2015 2015 HOH HOH . H 6 HOH A 16 2016 2016 HOH HOH . H 6 HOH A 17 2017 2017 HOH HOH . H 6 HOH A 18 2018 2018 HOH HOH . H 6 HOH A 19 2019 2019 HOH HOH . H 6 HOH A 20 2020 2020 HOH HOH . H 6 HOH A 21 2021 2021 HOH HOH . H 6 HOH A 22 2022 2022 HOH HOH . H 6 HOH A 23 2023 2023 HOH HOH . H 6 HOH A 24 2024 2024 HOH HOH . H 6 HOH A 25 2025 2025 HOH HOH . H 6 HOH A 26 2026 2026 HOH HOH . H 6 HOH A 27 2027 2027 HOH HOH . H 6 HOH A 28 2028 2028 HOH HOH . H 6 HOH A 29 2029 2029 HOH HOH . H 6 HOH A 30 2030 2030 HOH HOH . H 6 HOH A 31 2031 2031 HOH HOH . H 6 HOH A 32 2032 2032 HOH HOH . H 6 HOH A 33 2033 2033 HOH HOH . H 6 HOH A 34 2034 2034 HOH HOH . H 6 HOH A 35 2035 2035 HOH HOH . H 6 HOH A 36 2036 2036 HOH HOH . H 6 HOH A 37 2037 2037 HOH HOH . H 6 HOH A 38 2038 2038 HOH HOH . I 6 HOH G 1 2001 2001 HOH HOH . I 6 HOH G 2 2002 2002 HOH HOH . I 6 HOH G 3 2003 2003 HOH HOH . I 6 HOH G 4 2004 2004 HOH HOH . I 6 HOH G 5 2005 2005 HOH HOH . I 6 HOH G 6 2006 2006 HOH HOH . I 6 HOH G 7 2007 2007 HOH HOH . I 6 HOH G 8 2008 2008 HOH HOH . I 6 HOH G 9 2009 2009 HOH HOH . I 6 HOH G 10 2010 2010 HOH HOH . I 6 HOH G 11 2011 2011 HOH HOH . I 6 HOH G 12 2012 2012 HOH HOH . I 6 HOH G 13 2013 2013 HOH HOH . I 6 HOH G 14 2014 2014 HOH HOH . I 6 HOH G 15 2015 2015 HOH HOH . I 6 HOH G 16 2016 2016 HOH HOH . I 6 HOH G 17 2017 2017 HOH HOH . I 6 HOH G 18 2018 2018 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DIO . . . D 4 -5.214 -7.056 -38.155 1 93.95 ? C1 DIO 1378 A 1 HETATM 2 C C2 DIO . . . D 4 -3.72 -8.384 -37.087 1 101.75 ? C2 DIO 1378 A 1 HETATM 3 C C1' DIO . . . D 4 -5.739 -8.26 -38.909 1 96.44 ? C1' DIO 1378 A 1 HETATM 4 C C2' DIO . . . D 4 -4.252 -9.59 -37.833 1 99.81 ? C2' DIO 1378 A 1 HETATM 5 O O1 DIO . . . D 4 -4.758 -7.453 -36.882 1 96.59 ? O1 DIO 1378 A 1 HETATM 6 O O1' DIO . . . D 4 -5.623 -9.413 -38.109 1 99.34 ? O1' DIO 1378 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #