data_4CBW # _model_server_result.job_id cmyl-oyCqPFMiGhSPd3Xjg _model_server_result.datetime_utc '2024-11-13 04:59:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4cbw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1379}' # _entry.id 4CBW # _exptl.entry_id 4CBW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4CBW _cell.length_a 54.24 _cell.length_b 69.53 _cell.length_c 178.83 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CBW _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 169 A GLU 168 1_555 F CA CA . G CA 1150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc2 C CA CA . A CA 1377 1_555 E O2B ATP . A ATP 1379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc3 C CA CA . A CA 1377 1_555 E PG ATP . A ATP 1379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.106 ? metalc ? metalc4 C CA CA . A CA 1377 1_555 E O2G ATP . A ATP 1379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.797 ? metalc ? metalc5 C CA CA . A CA 1377 1_555 E O3G ATP . A ATP 1379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc6 C CA CA . A CA 1377 1_555 H O HOH . A HOH 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc7 C CA CA . A CA 1377 1_555 H O HOH . A HOH 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc8 C CA CA . A CA 1377 1_555 H O HOH . A HOH 2006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc9 C CA CA . A CA 1377 1_555 H O HOH . A HOH 2015 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc10 C CA CA . A CA 1377 1_555 H O HOH . A HOH 2022 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc11 H O HOH . A HOH 2024 1_555 F CA CA . G CA 1150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? metalc ? metalc12 H O HOH . A HOH 2025 1_555 F CA CA . G CA 1150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? metalc ? metalc13 B O GLY 43 G GLY 65 1_555 G CA CA . G CA 1151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc14 B OD1 ASP 44 G ASP 66 1_555 G CA CA . G CA 1151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc15 B OE1 GLU 75 G GLU 97 1_555 G CA CA . G CA 1151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc16 B OE2 GLU 75 G GLU 97 1_555 G CA CA . G CA 1151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc17 B OD2 ASP 87 G ASP 109 1_555 F CA CA . G CA 1150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc18 B OD1 ASP 87 G ASP 109 1_555 F CA CA . G CA 1150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.769 ? metalc ? metalc19 B O GLY 92 G GLY 114 1_555 F CA CA . G CA 1150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc20 B O ALA 94 G ALA 116 1_555 F CA CA . G CA 1150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc21 B O VAL 123 G VAL 145 1_555 G CA CA . G CA 1151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc22 G CA CA . G CA 1151 1_555 I O HOH . G HOH 2006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? metalc ? metalc23 G CA CA . G CA 1151 1_555 I O HOH . G HOH 2015 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 4CBW _atom_sites.fract_transf_matrix[1][1] 0.018437 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014382 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005592 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 1377 1377 CA CA . D 4 DIO A 1 1378 1378 DIO DIO . E 5 ATP A 1 1379 1379 ATP ATP . F 3 CA G 1 1150 1150 CA CA . G 3 CA G 1 1151 1151 CA CA . H 6 HOH A 1 2001 2001 HOH HOH . H 6 HOH A 2 2002 2002 HOH HOH . H 6 HOH A 3 2003 2003 HOH HOH . H 6 HOH A 4 2004 2004 HOH HOH . H 6 HOH A 5 2005 2005 HOH HOH . H 6 HOH A 6 2006 2006 HOH HOH . H 6 HOH A 7 2007 2007 HOH HOH . H 6 HOH A 8 2008 2008 HOH HOH . H 6 HOH A 9 2009 2009 HOH HOH . H 6 HOH A 10 2010 2010 HOH HOH . H 6 HOH A 11 2011 2011 HOH HOH . H 6 HOH A 12 2012 2012 HOH HOH . H 6 HOH A 13 2013 2013 HOH HOH . H 6 HOH A 14 2014 2014 HOH HOH . H 6 HOH A 15 2015 2015 HOH HOH . H 6 HOH A 16 2016 2016 HOH HOH . H 6 HOH A 17 2017 2017 HOH HOH . H 6 HOH A 18 2018 2018 HOH HOH . H 6 HOH A 19 2019 2019 HOH HOH . H 6 HOH A 20 2020 2020 HOH HOH . H 6 HOH A 21 2021 2021 HOH HOH . H 6 HOH A 22 2022 2022 HOH HOH . H 6 HOH A 23 2023 2023 HOH HOH . H 6 HOH A 24 2024 2024 HOH HOH . H 6 HOH A 25 2025 2025 HOH HOH . H 6 HOH A 26 2026 2026 HOH HOH . H 6 HOH A 27 2027 2027 HOH HOH . H 6 HOH A 28 2028 2028 HOH HOH . H 6 HOH A 29 2029 2029 HOH HOH . H 6 HOH A 30 2030 2030 HOH HOH . H 6 HOH A 31 2031 2031 HOH HOH . H 6 HOH A 32 2032 2032 HOH HOH . H 6 HOH A 33 2033 2033 HOH HOH . H 6 HOH A 34 2034 2034 HOH HOH . H 6 HOH A 35 2035 2035 HOH HOH . H 6 HOH A 36 2036 2036 HOH HOH . H 6 HOH A 37 2037 2037 HOH HOH . H 6 HOH A 38 2038 2038 HOH HOH . I 6 HOH G 1 2001 2001 HOH HOH . I 6 HOH G 2 2002 2002 HOH HOH . I 6 HOH G 3 2003 2003 HOH HOH . I 6 HOH G 4 2004 2004 HOH HOH . I 6 HOH G 5 2005 2005 HOH HOH . I 6 HOH G 6 2006 2006 HOH HOH . I 6 HOH G 7 2007 2007 HOH HOH . I 6 HOH G 8 2008 2008 HOH HOH . I 6 HOH G 9 2009 2009 HOH HOH . I 6 HOH G 10 2010 2010 HOH HOH . I 6 HOH G 11 2011 2011 HOH HOH . I 6 HOH G 12 2012 2012 HOH HOH . I 6 HOH G 13 2013 2013 HOH HOH . I 6 HOH G 14 2014 2014 HOH HOH . I 6 HOH G 15 2015 2015 HOH HOH . I 6 HOH G 16 2016 2016 HOH HOH . I 6 HOH G 17 2017 2017 HOH HOH . I 6 HOH G 18 2018 2018 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . E 5 -4.492 1.939 -18.306 1 61.09 ? PG ATP 1379 A 1 HETATM 2 O O1G ATP . . . E 5 -4.052 1.527 -16.923 1 67.35 ? O1G ATP 1379 A 1 HETATM 3 O O2G ATP . . . E 5 -3.368 2.142 -19.293 1 62.06 ? O2G ATP 1379 A 1 HETATM 4 O O3G ATP . . . E 5 -5.662 1.164 -18.864 1 68.1 ? O3G ATP 1379 A 1 HETATM 5 P PB ATP . . . E 5 -6.487 3.922 -18.607 1 65.66 ? PB ATP 1379 A 1 HETATM 6 O O1B ATP . . . E 5 -7.504 3.548 -17.555 1 60.32 ? O1B ATP 1379 A 1 HETATM 7 O O2B ATP . . . E 5 -6.689 3.533 -20.052 1 54.82 ? O2B ATP 1379 A 1 HETATM 8 O O3B ATP . . . E 5 -5.039 3.436 -18.104 1 85.13 ? O3B ATP 1379 A 1 HETATM 9 P PA ATP . . . E 5 -6.415 6.494 -19.79 1 57.44 ? PA ATP 1379 A 1 HETATM 10 O O1A ATP . . . E 5 -5.644 5.985 -20.985 1 43.55 ? O1A ATP 1379 A 1 HETATM 11 O O2A ATP . . . E 5 -7.875 6.853 -19.933 1 71.34 ? O2A ATP 1379 A 1 HETATM 12 O O3A ATP . . . E 5 -6.239 5.506 -18.532 1 64.01 ? O3A ATP 1379 A 1 HETATM 13 O O5' ATP . . . E 5 -5.63 7.76 -19.191 1 70.01 ? O5' ATP 1379 A 1 HETATM 14 C C5' ATP . . . E 5 -6.123 8.385 -18.01 1 65.09 ? C5' ATP 1379 A 1 HETATM 15 C C4' ATP . . . E 5 -4.961 9.014 -17.261 1 55.56 ? C4' ATP 1379 A 1 HETATM 16 O O4' ATP . . . E 5 -4.39 10.054 -18.055 1 56.68 ? O4' ATP 1379 A 1 HETATM 17 C C3' ATP . . . E 5 -5.415 9.625 -15.947 1 52.13 ? C3' ATP 1379 A 1 HETATM 18 O O3' ATP . . . E 5 -4.603 9.115 -14.885 1 55.75 ? O3' ATP 1379 A 1 HETATM 19 C C2' ATP . . . E 5 -5.247 11.121 -16.129 1 52.07 ? C2' ATP 1379 A 1 HETATM 20 O O2' ATP . . . E 5 -4.757 11.76 -14.946 1 65.2 ? O2' ATP 1379 A 1 HETATM 21 C C1' ATP . . . E 5 -4.266 11.25 -17.285 1 58.44 ? C1' ATP 1379 A 1 HETATM 22 N N9 ATP . . . E 5 -4.54 12.44 -18.129 1 62.93 ? N9 ATP 1379 A 1 HETATM 23 C C8 ATP . . . E 5 -5.683 12.704 -18.791 1 69.54 ? C8 ATP 1379 A 1 HETATM 24 N N7 ATP . . . E 5 -5.583 13.881 -19.464 1 79.16 ? N7 ATP 1379 A 1 HETATM 25 C C5 ATP . . . E 5 -4.356 14.385 -19.234 1 72.7 ? C5 ATP 1379 A 1 HETATM 26 C C6 ATP . . . E 5 -3.598 15.593 -19.635 1 72.15 ? C6 ATP 1379 A 1 HETATM 27 N N6 ATP . . . E 5 -4.143 16.53 -20.446 1 71.66 ? N6 ATP 1379 A 1 HETATM 28 N N1 ATP . . . E 5 -2.338 15.728 -19.168 1 75.4 ? N1 ATP 1379 A 1 HETATM 29 C C2 ATP . . . E 5 -1.772 14.811 -18.362 1 73.92 ? C2 ATP 1379 A 1 HETATM 30 N N3 ATP . . . E 5 -2.406 13.695 -17.959 1 70.63 ? N3 ATP 1379 A 1 HETATM 31 C C4 ATP . . . E 5 -3.674 13.429 -18.351 1 66.73 ? C4 ATP 1379 A 1 HETATM 32 H "H5'1" ATP . . . E 5 -6.854 9.152 -18.273 1 78.68 ? "H5'1" ATP 1379 A 1 HETATM 33 H "H5'2" ATP . . . E 5 -6.616 7.644 -17.376 1 78.68 ? "H5'2" ATP 1379 A 1 HETATM 34 H H4' ATP . . . E 5 -4.208 8.241 -17.054 1 67.24 ? H4' ATP 1379 A 1 HETATM 35 H H3' ATP . . . E 5 -6.475 9.389 -15.778 1 63.13 ? H3' ATP 1379 A 1 HETATM 36 H HO3' ATP . . . E 5 -4.889 9.502 -14.046 1 67.46 ? HO3' ATP 1379 A 1 HETATM 37 H H2' ATP . . . E 5 -6.211 11.557 -16.426 1 63.05 ? H2' ATP 1379 A 1 HETATM 38 H HO2' ATP . . . E 5 -5.389 11.635 -14.226 1 78.81 ? HO2' ATP 1379 A 1 HETATM 39 H H1' ATP . . . E 5 -3.25 11.317 -16.872 1 70.69 ? H1' ATP 1379 A 1 HETATM 40 H H8 ATP . . . E 5 -6.559 12.068 -18.787 1 84.02 ? H8 ATP 1379 A 1 HETATM 41 H HN61 ATP . . . E 5 -5.086 16.415 -20.79 1 86.55 ? HN61 ATP 1379 A 1 HETATM 42 H HN62 ATP . . . E 5 -3.606 17.345 -20.708 1 86.55 ? HN62 ATP 1379 A 1 HETATM 43 H H2 ATP . . . E 5 -0.758 14.981 -18.02 1 89.28 ? H2 ATP 1379 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #