data_4CC1 # _model_server_result.job_id Y1szTOqQq5P0zrySkdWSnw _model_server_result.datetime_utc '2025-03-06 07:28:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4cc1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1339}' # _entry.id 4CC1 # _exptl.entry_id 4CC1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 164.156 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description alpha-L-fucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 92.89 _cell.angle_beta 104.95 _cell.angle_gamma 105.92 _cell.entry_id 4CC1 _cell.length_a 55.95 _cell.length_b 60.56 _cell.length_c 63.03 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CC1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,P 1 1 B,J,K,L,M,N,O,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 A CYS 54 1_555 A SG CYS 35 A CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf2 A SG CYS 24 A CYS 55 1_555 A SG CYS 40 A CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf3 A SG CYS 47 A CYS 78 1_555 A SG CYS 61 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf4 A SG CYS 156 A CYS 187 1_555 A SG CYS 165 A CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf5 A SG CYS 169 A CYS 200 1_555 A SG CYS 181 A CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? disulf ? disulf6 A SG CYS 189 A CYS 220 1_555 A SG CYS 198 A CYS 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf7 A SG CYS 203 A CYS 234 1_555 A SG CYS 214 A CYS 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf8 A SG CYS 207 A CYS 238 1_555 A SG CYS 220 A CYS 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf9 A SG CYS 222 A CYS 253 1_555 A SG CYS 231 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf10 A SG CYS 234 A CYS 265 1_555 A SG CYS 245 A CYS 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? disulf ? disulf11 A SG CYS 240 A CYS 271 1_555 A SG CYS 251 A CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf12 A SG CYS 253 A CYS 284 1_555 A SG CYS 262 A CYS 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf13 A SG CYS 269 A CYS 300 1_555 A SG CYS 281 A CYS 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf14 A SG CYS 275 A CYS 306 1_555 A SG CYS 291 A CYS 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf15 A SG CYS 293 A CYS 324 1_555 A SG CYS 302 A CYS 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf16 B SG CYS 23 B CYS 54 1_555 B SG CYS 35 B CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf17 B SG CYS 24 B CYS 55 1_555 B SG CYS 40 B CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf18 B SG CYS 47 B CYS 78 1_555 B SG CYS 61 B CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf19 B SG CYS 156 B CYS 187 1_555 B SG CYS 165 B CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? disulf ? disulf20 B SG CYS 169 B CYS 200 1_555 B SG CYS 181 B CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf21 B SG CYS 189 B CYS 220 1_555 B SG CYS 198 B CYS 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf22 B SG CYS 203 B CYS 234 1_555 B SG CYS 214 B CYS 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf23 B SG CYS 207 B CYS 238 1_555 B SG CYS 220 B CYS 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf24 B SG CYS 222 B CYS 253 1_555 B SG CYS 231 B CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf25 B SG CYS 234 B CYS 265 1_555 B SG CYS 245 B CYS 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? disulf ? disulf26 B SG CYS 240 B CYS 271 1_555 B SG CYS 251 B CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf27 B SG CYS 253 B CYS 284 1_555 B SG CYS 262 B CYS 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf28 B SG CYS 269 B CYS 300 1_555 B SG CYS 281 B CYS 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf29 B SG CYS 275 B CYS 306 1_555 B SG CYS 291 B CYS 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf30 B SG CYS 293 B CYS 324 1_555 B SG CYS 302 B CYS 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? covale ? covale1 A ND2 ASN 186 A ASN 217 1_555 C C1 NAG . A NAG 1338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale2 A OG1 THR 280 A THR 311 1_555 D C1 FUC . A FUC 1339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? covale ? covale3 B ND2 ASN 186 B ASN 217 1_555 J C1 NAG . B NAG 1338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? metalc ? metalc1 A OD2 ASP 41 A ASP 72 1_555 E CA CA . A CA 1340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.838 ? metalc ? metalc2 A OD1 ASP 109 A ASP 140 1_555 E CA CA . A CA 1340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? metalc ? metalc3 A O SER 110 A SER 141 1_555 E CA CA . A CA 1340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.002 ? metalc ? metalc4 B OD2 ASP 41 B ASP 72 1_555 K CA CA . B CA 1339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.74 ? metalc ? metalc5 B OD1 ASP 109 B ASP 140 1_555 K CA CA . B CA 1339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.763 ? metalc ? metalc6 B O SER 110 B SER 141 1_555 K CA CA . B CA 1339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? metalc ? metalc7 K CA CA . B CA 1339 1_555 Q O HOH . B HOH 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? # _chem_comp.formula 'C6 H12 O5' _chem_comp.formula_weight 164.156 _chem_comp.id FUC _chem_comp.mon_nstd_flag . _chem_comp.name alpha-L-fucopyranose _chem_comp.type 'l-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-L-fucose;6-deoxy-alpha-L-galactopyranose;L-fucose;fucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 FUC sing 92 n n C1 O1 FUC sing 93 n n C1 O5 FUC sing 94 n n C1 H1 FUC sing 95 n n C2 C3 FUC sing 96 n n C2 O2 FUC sing 97 n n C2 H2 FUC sing 98 n n C3 C4 FUC sing 99 n n C3 O3 FUC sing 100 n n C3 H3 FUC sing 101 n n C4 C5 FUC sing 102 n n C4 O4 FUC sing 103 n n C4 H4 FUC sing 104 n n C5 C6 FUC sing 105 n n C5 O5 FUC sing 106 n n C5 H5 FUC sing 107 n n C6 H61 FUC sing 108 n n C6 H62 FUC sing 109 n n C6 H63 FUC sing 110 n n O1 HO1 FUC sing 111 n n O2 HO2 FUC sing 112 n n O3 HO3 FUC sing 113 n n O4 HO4 FUC sing 114 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version FUC LFucpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 FUC a-L-fucopyranose 'COMMON NAME' GMML 1 FUC a-L-Fucp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 FUC Fuc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4CC1 _atom_sites.fract_transf_matrix[1][1] 0.017873 _atom_sites.fract_transf_matrix[1][2] 0.005098 _atom_sites.fract_transf_matrix[1][3] 0.005484 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017171 _atom_sites.fract_transf_matrix[2][3] 0.002259 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016563 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 1338 1338 NAG NAG . D 3 FUC A 1 1339 1339 FUC FUC . E 4 CA A 1 1340 1340 CA CA . F 5 CL A 1 1341 1341 CL CL . G 5 CL A 1 1342 1342 CL CL . H 5 CL A 1 1343 1343 CL CL . I 5 CL A 1 1344 1344 CL CL . J 2 NAG B 1 1338 1338 NAG NAG . K 4 CA B 1 1339 1339 CA CA . L 5 CL B 1 1340 1340 CL CL . M 6 EDO B 1 1341 1341 EDO EDO . N 6 EDO B 1 1342 1342 EDO EDO . O 5 CL B 1 1343 1343 CL CL . P 7 HOH A 1 2001 2001 HOH HOH . Q 7 HOH B 1 2001 2001 HOH HOH . Q 7 HOH B 2 2002 2002 HOH HOH . Q 7 HOH B 3 2003 2003 HOH HOH . Q 7 HOH B 4 2004 2004 HOH HOH . Q 7 HOH B 5 2005 2005 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 FUC . . . D 3 -22.57 -5.886 110.284 1 70.91 ? C1 FUC 1339 A 1 HETATM 2 C C2 FUC . . . D 3 -21.757 -5.413 111.504 1 72.79 ? C2 FUC 1339 A 1 HETATM 3 C C3 FUC . . . D 3 -22.056 -3.952 111.839 1 72.44 ? C3 FUC 1339 A 1 HETATM 4 C C4 FUC . . . D 3 -23.556 -3.708 112.005 1 69.68 ? C4 FUC 1339 A 1 HETATM 5 C C5 FUC . . . D 3 -24.287 -4.135 110.731 1 69.09 ? C5 FUC 1339 A 1 HETATM 6 C C6 FUC . . . D 3 -25.793 -4.044 110.835 1 66.7 ? C6 FUC 1339 A 1 HETATM 7 O O2 FUC . . . D 3 -20.36 -5.577 111.276 1 73.93 ? O2 FUC 1339 A 1 HETATM 8 O O3 FUC . . . D 3 -21.353 -3.572 113.018 1 72.4 ? O3 FUC 1339 A 1 HETATM 9 O O4 FUC . . . D 3 -24.044 -4.429 113.131 1 68.95 ? O4 FUC 1339 A 1 HETATM 10 O O5 FUC . . . D 3 -23.952 -5.504 110.414 1 71.35 ? O5 FUC 1339 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 10 #