data_4CC1 # _model_server_result.job_id zG76GC1rYPjvnOeghmf36w _model_server_result.datetime_utc '2025-03-06 07:11:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4cc1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":1342}' # _entry.id 4CC1 # _exptl.entry_id 4CC1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 92.89 _cell.angle_beta 104.95 _cell.angle_gamma 105.92 _cell.entry_id 4CC1 _cell.length_a 55.95 _cell.length_b 60.56 _cell.length_c 63.03 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CC1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,P 1 1 B,J,K,L,M,N,O,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 M N N ? 6 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 A CYS 54 1_555 A SG CYS 35 A CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf2 A SG CYS 24 A CYS 55 1_555 A SG CYS 40 A CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf3 A SG CYS 47 A CYS 78 1_555 A SG CYS 61 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf4 A SG CYS 156 A CYS 187 1_555 A SG CYS 165 A CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf5 A SG CYS 169 A CYS 200 1_555 A SG CYS 181 A CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? disulf ? disulf6 A SG CYS 189 A CYS 220 1_555 A SG CYS 198 A CYS 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf7 A SG CYS 203 A CYS 234 1_555 A SG CYS 214 A CYS 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf8 A SG CYS 207 A CYS 238 1_555 A SG CYS 220 A CYS 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf9 A SG CYS 222 A CYS 253 1_555 A SG CYS 231 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf10 A SG CYS 234 A CYS 265 1_555 A SG CYS 245 A CYS 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? disulf ? disulf11 A SG CYS 240 A CYS 271 1_555 A SG CYS 251 A CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf12 A SG CYS 253 A CYS 284 1_555 A SG CYS 262 A CYS 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf13 A SG CYS 269 A CYS 300 1_555 A SG CYS 281 A CYS 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf14 A SG CYS 275 A CYS 306 1_555 A SG CYS 291 A CYS 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf15 A SG CYS 293 A CYS 324 1_555 A SG CYS 302 A CYS 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf16 B SG CYS 23 B CYS 54 1_555 B SG CYS 35 B CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf17 B SG CYS 24 B CYS 55 1_555 B SG CYS 40 B CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf18 B SG CYS 47 B CYS 78 1_555 B SG CYS 61 B CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf19 B SG CYS 156 B CYS 187 1_555 B SG CYS 165 B CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? disulf ? disulf20 B SG CYS 169 B CYS 200 1_555 B SG CYS 181 B CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf21 B SG CYS 189 B CYS 220 1_555 B SG CYS 198 B CYS 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf22 B SG CYS 203 B CYS 234 1_555 B SG CYS 214 B CYS 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf23 B SG CYS 207 B CYS 238 1_555 B SG CYS 220 B CYS 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf24 B SG CYS 222 B CYS 253 1_555 B SG CYS 231 B CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf25 B SG CYS 234 B CYS 265 1_555 B SG CYS 245 B CYS 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? disulf ? disulf26 B SG CYS 240 B CYS 271 1_555 B SG CYS 251 B CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf27 B SG CYS 253 B CYS 284 1_555 B SG CYS 262 B CYS 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf28 B SG CYS 269 B CYS 300 1_555 B SG CYS 281 B CYS 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf29 B SG CYS 275 B CYS 306 1_555 B SG CYS 291 B CYS 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf30 B SG CYS 293 B CYS 324 1_555 B SG CYS 302 B CYS 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? covale ? covale1 A ND2 ASN 186 A ASN 217 1_555 C C1 NAG . A NAG 1338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale2 A OG1 THR 280 A THR 311 1_555 D C1 FUC . A FUC 1339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? covale ? covale3 B ND2 ASN 186 B ASN 217 1_555 J C1 NAG . B NAG 1338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? metalc ? metalc1 A OD2 ASP 41 A ASP 72 1_555 E CA CA . A CA 1340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.838 ? metalc ? metalc2 A OD1 ASP 109 A ASP 140 1_555 E CA CA . A CA 1340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? metalc ? metalc3 A O SER 110 A SER 141 1_555 E CA CA . A CA 1340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.002 ? metalc ? metalc4 B OD2 ASP 41 B ASP 72 1_555 K CA CA . B CA 1339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.74 ? metalc ? metalc5 B OD1 ASP 109 B ASP 140 1_555 K CA CA . B CA 1339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.763 ? metalc ? metalc6 B O SER 110 B SER 141 1_555 K CA CA . B CA 1339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? metalc ? metalc7 K CA CA . B CA 1339 1_555 Q O HOH . B HOH 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 4CC1 _atom_sites.fract_transf_matrix[1][1] 0.017873 _atom_sites.fract_transf_matrix[1][2] 0.005098 _atom_sites.fract_transf_matrix[1][3] 0.005484 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017171 _atom_sites.fract_transf_matrix[2][3] 0.002259 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016563 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 1338 1338 NAG NAG . D 3 FUC A 1 1339 1339 FUC FUC . E 4 CA A 1 1340 1340 CA CA . F 5 CL A 1 1341 1341 CL CL . G 5 CL A 1 1342 1342 CL CL . H 5 CL A 1 1343 1343 CL CL . I 5 CL A 1 1344 1344 CL CL . J 2 NAG B 1 1338 1338 NAG NAG . K 4 CA B 1 1339 1339 CA CA . L 5 CL B 1 1340 1340 CL CL . M 6 EDO B 1 1341 1341 EDO EDO . N 6 EDO B 1 1342 1342 EDO EDO . O 5 CL B 1 1343 1343 CL CL . P 7 HOH A 1 2001 2001 HOH HOH . Q 7 HOH B 1 2001 2001 HOH HOH . Q 7 HOH B 2 2002 2002 HOH HOH . Q 7 HOH B 3 2003 2003 HOH HOH . Q 7 HOH B 4 2004 2004 HOH HOH . Q 7 HOH B 5 2005 2005 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . N 6 -11.029 -6.829 67.267 1 54.81 ? C1 EDO 1342 B 1 HETATM 2 O O1 EDO . . . N 6 -9.789 -7.517 67.581 1 58.83 ? O1 EDO 1342 B 1 HETATM 3 C C2 EDO . . . N 6 -11.779 -6.229 68.561 1 48 ? C2 EDO 1342 B 1 HETATM 4 O O2 EDO . . . N 6 -10.913 -5.955 69.648 1 44.83 ? O2 EDO 1342 B 1 HETATM 5 H H11 EDO . . . N 6 -11.638 -7.596 66.792 1 54.14 ? H11 EDO 1342 B 1 HETATM 6 H H12 EDO . . . N 6 -10.877 -6.058 66.515 1 54.77 ? H12 EDO 1342 B 1 HETATM 7 H HO1 EDO . . . N 6 -9.092 -6.837 67.776 1 58.6 ? HO1 EDO 1342 B 1 HETATM 8 H H21 EDO . . . N 6 -12.604 -6.856 68.89 1 46.87 ? H21 EDO 1342 B 1 HETATM 9 H H22 EDO . . . N 6 -12.211 -5.257 68.327 1 47.82 ? H22 EDO 1342 B 1 HETATM 10 H HO2 EDO . . . N 6 -11.385 -6.25 70.47 1 44.55 ? HO2 EDO 1342 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #