data_4CCL # _model_server_result.job_id K0oQN50HL6PCnuDMTtoGDg _model_server_result.datetime_utc '2025-03-09 06:13:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ccl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1373}' # _entry.id 4CCL # _exptl.entry_id 4CCL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4CCL _cell.length_a 120.693 _cell.length_b 120.693 _cell.length_c 133.498 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4CCL _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 J N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 154 A CYS 154 1_555 B SG CYS 154 B CYS 154 3_544 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? covale ? covale1 A C MSE 1 A MSE 1 1_555 A N GLU 2 A GLU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C ALA 44 A ALA 44 1_555 A N MSE 45 A MSE 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C MSE 45 A MSE 45 1_555 A N GLU 46 A GLU 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 A C LEU 96 A LEU 96 1_555 A N MSE 97 A MSE 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 A C MSE 97 A MSE 97 1_555 A N ARG 98 A ARG 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale6 A C LEU 111 A LEU 111 1_555 A N MSE 112 A MSE 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale7 A C MSE 112 A MSE 112 1_555 A N ILE 113 A ILE 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale8 A C ALA 195 A ALA 195 1_555 A N MSE 196 A MSE 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale9 A C MSE 196 A MSE 196 1_555 A N ASN 197 A ASN 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale10 A C GLU 246 A GLU 246 1_555 A N MSE 247 A MSE 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale11 A C MSE 247 A MSE 247 1_555 A N ASP 248 A ASP 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale12 A C GLU 252 A GLU 252 1_555 A N MSE 253 A MSE 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale13 A C MSE 253 A MSE 253 1_555 A N MSE 254 A MSE 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale14 A C MSE 254 A MSE 254 1_555 A N LEU 255 A LEU 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale15 A C ALA 358 A ALA 358 1_555 A N MSE 359 A MSE 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale16 A C MSE 359 A MSE 359 1_555 A N LEU 360 A LEU 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale17 B C MSE 1 B MSE 1 1_555 B N GLU 2 B GLU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale18 B C ALA 44 B ALA 44 1_555 B N MSE 45 B MSE 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale19 B C MSE 45 B MSE 45 1_555 B N GLU 46 B GLU 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale20 B C LEU 96 B LEU 96 1_555 B N MSE 97 B MSE 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale21 B C MSE 97 B MSE 97 1_555 B N ARG 98 B ARG 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale22 B C LEU 111 B LEU 111 1_555 B N MSE 112 B MSE 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale23 B C MSE 112 B MSE 112 1_555 B N ILE 113 B ILE 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale24 B C GLN 149 B GLN 149 1_555 B N MSE 150 B MSE 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale25 B C MSE 150 B MSE 150 1_555 B N LYS 151 B LYS 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale26 B C ALA 195 B ALA 195 1_555 B N MSE 196 B MSE 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale27 B C MSE 196 B MSE 196 1_555 B N ASN 197 B ASN 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale28 B C GLU 246 B GLU 246 1_555 B N MSE 247 B MSE 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale29 B C MSE 247 B MSE 247 1_555 B N ASP 248 B ASP 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale30 B C GLU 252 B GLU 252 1_555 B N MSE 253 B MSE 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale31 B C MSE 253 B MSE 253 1_555 B N MSE 254 B MSE 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale32 B C MSE 254 B MSE 254 1_555 B N LEU 255 B LEU 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale33 B C ALA 358 B ALA 358 1_555 B N MSE 359 B MSE 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale34 B C MSE 359 B MSE 359 1_555 B N LEU 360 B LEU 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc1 A NE2 HIS 125 A HIS 125 1_555 C MN MN . A MN 1373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc2 A OD2 ASP 127 A ASP 127 1_555 C MN MN . A MN 1373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc3 A NE2 HIS 187 A HIS 187 1_555 C MN MN . A MN 1373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc4 B O ASP 58 B ASP 58 1_555 J MN MN . B MN 1373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4CCL _atom_sites.fract_transf_matrix[1][1] 0.008285 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008285 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007491 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 1373 1373 MN MN . D 2 MN A 1 1374 1374 MN MN . E 3 SO4 A 1 1375 1375 SO4 SO4 . F 3 SO4 A 1 1376 1376 SO4 SO4 . G 3 SO4 A 1 1377 1377 SO4 SO4 . H 3 SO4 A 1 1378 1378 SO4 SO4 . I 3 SO4 A 1 1379 1379 SO4 SO4 . J 2 MN B 1 1373 1373 MN MN . K 2 MN B 1 1374 1374 MN MN . L 3 SO4 B 1 1375 1375 SO4 SO4 . M 3 SO4 B 1 1376 1376 SO4 SO4 . N 3 SO4 B 1 1377 1377 SO4 SO4 . O 3 SO4 B 1 1378 1378 SO4 SO4 . P 4 HOH A 1 2001 2001 HOH HOH . P 4 HOH A 2 2002 2002 HOH HOH . P 4 HOH A 3 2003 2003 HOH HOH . P 4 HOH A 4 2004 2004 HOH HOH . P 4 HOH A 5 2005 2005 HOH HOH . P 4 HOH A 6 2006 2006 HOH HOH . P 4 HOH A 7 2007 2007 HOH HOH . P 4 HOH A 8 2008 2008 HOH HOH . P 4 HOH A 9 2009 2009 HOH HOH . P 4 HOH A 10 2010 2010 HOH HOH . P 4 HOH A 11 2011 2011 HOH HOH . P 4 HOH A 12 2012 2012 HOH HOH . P 4 HOH A 13 2013 2013 HOH HOH . P 4 HOH A 14 2014 2014 HOH HOH . P 4 HOH A 15 2015 2015 HOH HOH . P 4 HOH A 16 2016 2016 HOH HOH . P 4 HOH A 17 2017 2017 HOH HOH . P 4 HOH A 18 2018 2018 HOH HOH . P 4 HOH A 19 2019 2019 HOH HOH . P 4 HOH A 20 2020 2020 HOH HOH . P 4 HOH A 21 2021 2021 HOH HOH . P 4 HOH A 22 2022 2022 HOH HOH . P 4 HOH A 23 2023 2023 HOH HOH . P 4 HOH A 24 2024 2024 HOH HOH . P 4 HOH A 25 2025 2025 HOH HOH . P 4 HOH A 26 2026 2026 HOH HOH . P 4 HOH A 27 2027 2027 HOH HOH . P 4 HOH A 28 2028 2028 HOH HOH . P 4 HOH A 29 2029 2029 HOH HOH . P 4 HOH A 30 2030 2030 HOH HOH . P 4 HOH A 31 2031 2031 HOH HOH . P 4 HOH A 32 2032 2032 HOH HOH . P 4 HOH A 33 2033 2033 HOH HOH . P 4 HOH A 34 2034 2034 HOH HOH . P 4 HOH A 35 2035 2035 HOH HOH . P 4 HOH A 36 2036 2036 HOH HOH . P 4 HOH A 37 2037 2037 HOH HOH . P 4 HOH A 38 2038 2038 HOH HOH . P 4 HOH A 39 2039 2039 HOH HOH . P 4 HOH A 40 2040 2040 HOH HOH . P 4 HOH A 41 2041 2041 HOH HOH . P 4 HOH A 42 2042 2042 HOH HOH . P 4 HOH A 43 2043 2043 HOH HOH . P 4 HOH A 44 2044 2044 HOH HOH . P 4 HOH A 45 2045 2045 HOH HOH . P 4 HOH A 46 2046 2046 HOH HOH . P 4 HOH A 47 2047 2047 HOH HOH . P 4 HOH A 48 2048 2048 HOH HOH . P 4 HOH A 49 2049 2049 HOH HOH . P 4 HOH A 50 2050 2050 HOH HOH . P 4 HOH A 51 2051 2051 HOH HOH . P 4 HOH A 52 2052 2052 HOH HOH . P 4 HOH A 53 2053 2053 HOH HOH . P 4 HOH A 54 2054 2054 HOH HOH . P 4 HOH A 55 2055 2055 HOH HOH . Q 4 HOH B 1 2001 2001 HOH HOH . Q 4 HOH B 2 2002 2002 HOH HOH . Q 4 HOH B 3 2003 2003 HOH HOH . Q 4 HOH B 4 2004 2004 HOH HOH . Q 4 HOH B 5 2005 2005 HOH HOH . Q 4 HOH B 6 2006 2006 HOH HOH . Q 4 HOH B 7 2007 2007 HOH HOH . Q 4 HOH B 8 2008 2008 HOH HOH . Q 4 HOH B 9 2009 2009 HOH HOH . Q 4 HOH B 10 2010 2010 HOH HOH . Q 4 HOH B 11 2011 2011 HOH HOH . Q 4 HOH B 12 2012 2012 HOH HOH . Q 4 HOH B 13 2013 2013 HOH HOH . Q 4 HOH B 14 2014 2014 HOH HOH . Q 4 HOH B 15 2015 2015 HOH HOH . Q 4 HOH B 16 2016 2016 HOH HOH . Q 4 HOH B 17 2017 2017 HOH HOH . Q 4 HOH B 18 2018 2018 HOH HOH . Q 4 HOH B 19 2019 2019 HOH HOH . Q 4 HOH B 20 2020 2020 HOH HOH . Q 4 HOH B 21 2021 2021 HOH HOH . Q 4 HOH B 22 2022 2022 HOH HOH . Q 4 HOH B 23 2023 2023 HOH HOH . Q 4 HOH B 24 2024 2024 HOH HOH . Q 4 HOH B 25 2025 2025 HOH HOH . Q 4 HOH B 26 2026 2026 HOH HOH . Q 4 HOH B 27 2027 2027 HOH HOH . Q 4 HOH B 28 2028 2028 HOH HOH . Q 4 HOH B 29 2029 2029 HOH HOH . Q 4 HOH B 30 2030 2030 HOH HOH . Q 4 HOH B 31 2031 2031 HOH HOH . Q 4 HOH B 32 2032 2032 HOH HOH . Q 4 HOH B 33 2033 2033 HOH HOH . Q 4 HOH B 34 2034 2034 HOH HOH . Q 4 HOH B 35 2035 2035 HOH HOH . Q 4 HOH B 36 2036 2036 HOH HOH . Q 4 HOH B 37 2037 2037 HOH HOH . Q 4 HOH B 38 2038 2038 HOH HOH . Q 4 HOH B 39 2039 2039 HOH HOH . Q 4 HOH B 40 2040 2040 HOH HOH . Q 4 HOH B 41 2041 2041 HOH HOH . Q 4 HOH B 42 2042 2042 HOH HOH . Q 4 HOH B 43 2043 2043 HOH HOH . Q 4 HOH B 44 2044 2044 HOH HOH . Q 4 HOH B 45 2045 2045 HOH HOH . Q 4 HOH B 46 2046 2046 HOH HOH . Q 4 HOH B 47 2047 2047 HOH HOH . Q 4 HOH B 48 2048 2048 HOH HOH . Q 4 HOH B 49 2049 2049 HOH HOH . Q 4 HOH B 50 2050 2050 HOH HOH . Q 4 HOH B 51 2051 2051 HOH HOH . Q 4 HOH B 52 2052 2052 HOH HOH . Q 4 HOH B 53 2053 2053 HOH HOH . Q 4 HOH B 54 2054 2054 HOH HOH . Q 4 HOH B 55 2055 2055 HOH HOH . Q 4 HOH B 56 2056 2056 HOH HOH . Q 4 HOH B 57 2057 2057 HOH HOH . Q 4 HOH B 58 2058 2058 HOH HOH . Q 4 HOH B 59 2059 2059 HOH HOH . Q 4 HOH B 60 2060 2060 HOH HOH . Q 4 HOH B 61 2061 2061 HOH HOH . Q 4 HOH B 62 2062 2062 HOH HOH . Q 4 HOH B 63 2063 2063 HOH HOH . Q 4 HOH B 64 2064 2064 HOH HOH . Q 4 HOH B 65 2065 2065 HOH HOH . Q 4 HOH B 66 2066 2066 HOH HOH . Q 4 HOH B 67 2067 2067 HOH HOH . Q 4 HOH B 68 2068 2068 HOH HOH . Q 4 HOH B 69 2069 2069 HOH HOH . Q 4 HOH B 70 2070 2070 HOH HOH . Q 4 HOH B 71 2071 2071 HOH HOH . Q 4 HOH B 72 2072 2072 HOH HOH . Q 4 HOH B 73 2073 2073 HOH HOH . Q 4 HOH B 74 2074 2074 HOH HOH . Q 4 HOH B 75 2075 2075 HOH HOH . Q 4 HOH B 76 2076 2076 HOH HOH . Q 4 HOH B 77 2077 2077 HOH HOH . Q 4 HOH B 78 2078 2078 HOH HOH . Q 4 HOH B 79 2079 2079 HOH HOH . Q 4 HOH B 80 2080 2080 HOH HOH . Q 4 HOH B 81 2081 2081 HOH HOH . Q 4 HOH B 82 2082 2082 HOH HOH . Q 4 HOH B 83 2083 2083 HOH HOH . Q 4 HOH B 84 2084 2084 HOH HOH . Q 4 HOH B 85 2085 2085 HOH HOH . Q 4 HOH B 86 2086 2086 HOH HOH . Q 4 HOH B 87 2087 2087 HOH HOH . Q 4 HOH B 88 2088 2088 HOH HOH . Q 4 HOH B 89 2089 2089 HOH HOH . Q 4 HOH B 90 2090 2090 HOH HOH . Q 4 HOH B 91 2091 2091 HOH HOH . Q 4 HOH B 92 2092 2092 HOH HOH . Q 4 HOH B 93 2093 2093 HOH HOH . Q 4 HOH B 94 2094 2094 HOH HOH . Q 4 HOH B 95 2095 2095 HOH HOH . Q 4 HOH B 96 2096 2096 HOH HOH . Q 4 HOH B 97 2097 2097 HOH HOH . Q 4 HOH B 98 2098 2098 HOH HOH . Q 4 HOH B 99 2099 2099 HOH HOH . Q 4 HOH B 100 2100 2100 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 2 _atom_site.Cartn_x 96.068 _atom_site.Cartn_y -19.803 _atom_site.Cartn_z 63.878 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 112.07 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 1373 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #